BAC Information

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BAC

Clone NameB6Ng01-279I11
Chromosome4 (Build37)
Map Location 131,904,557 - 132,053,761
singlet/doubletdoublet
Overlap geneSnhg3, Phactr4, Med18, Sesn2
Upstream geneGm831, EG664832, LOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1
Downstream geneAtpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279I11.bB6Ng01-279I11.g
ACCGA079487GA079488
length840655
definitionB6Ng01-279I11.b B6Ng01-279I11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(132,052,932 - 132,053,761)(131,904,557 - 131,905,207)
sequence
gaattcttgcctttcattgaatcctggtctgttagccctgaattcagggc
ttgtgtgaggtagatggagccaagctcgcagtctttcccaggctgagcca
ttctgtaaaactgtcattattgctgggggtgagggggttgcattctgggt
ccttgggtaggagtcacctcctctccaggagtggctctagctaacacctt
cccacttcgtgtggggaggggctctctgtggtccctgctatactctcctc
cccaccccccaccccaacccccatgcccccaactccaccttcctgatgac
ggggaacctgctgtgttctcagcctcactgtcccttctttttgatgcggc
cctcagcggatatcctggagccttctccacacccagacatcctatgcttt
gtggaggaccccgcatttggatatgaagacttcactcgtcgagggactca
ggcgcccccaaccttccgtgcccaggtattgttcgttgtttcagattcac
acagaagcgggggcaagcactccacgtggttctaagttgacagtctcctc
acctcagaaaacccccgtgagggcagtggagacctgaaaggtccctgttg
tgggttgggaggtcatcacccggtttggtttctcgggctcagcacaagca
ggatacatgcagggtatgttatgcaaaagctaaagttgtgactcctagac
ttccgaggcccagatctctggccagccttggctcttccgaagtcttggtc
agtgacctctgttccccgtttcctcaggattatacctgggaggaccatgg
ctactcgcttgatccagaggcctctacctctgagtggagg
gaattccagtaaacatttggtgtgaaggttgtcttagagatatgaccaag
taagacttaaaacagggccaggcgtggtggcacatgcctttaatcccagc
actccggaggcagaggcaggcagatttctgagttcgaggccagcctggtc
tacaaagtgagttccagggcagccagggctatacagagaaaccctgtctt
gaaaaacaaacaaacaaacaaacaaagacttaaaacagggctggagagat
ggctcagcagttaaaagctctgactgctcttctagagggtcagagttcaa
ttcccagtaaccacatggcggctcacaaccatctgtaatgagatccgatg
ccctcttctggtgtgtctgaacagctacagtgtgctcatatgcataaatc
ttatggggtgaggttggggacttaaaagcaatgaatgatgcttaaagtct
gcacatatatgaacttgggtatcaccctactgccttcccagatgtgcatt
tttctgggtatctcaatacttacagtaaacttatagggtattattctgtc
atgatcttatccagtgcaccccaggaaccaccccatggtcattcccattt
ctcaagggactttttgaagcccagctgtgtgtgtgtgtgaagaacaatta
accaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_132052932_132053761
seq2: B6Ng01-279I11.b_45_884 (reverse)

seq1  CCTCC-CTCAG-GGTAGA-GCCTCTGGATC-AGCGAGTAGCCATGGTCTT  46
      ||||| ||||| |||||| ||||||||||| ||||||||||||||||| |
seq2  CCTCCACTCAGAGGTAGAGGCCTCTGGATCAAGCGAGTAGCCATGGTCCT  50

seq1  CCCAGGTATAATCCTGAGG-AACGGGGAA-AGAGGTCACTGACCAAGACT  94
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  CCCAGGTATAATCCTGAGGAAACGGGGAACAGAGGTCACTGACCAAGACT  100

seq1  TCGGAAG-GCCAAGGCTGGCCAGAGATCT-GGCCTCGGGACGTCTAGGAG  142
      ||||||| ||||||||||||||||||||| |||||| ||| |||||||||
seq2  TCGGAAGAGCCAAGGCTGGCCAGAGATCTGGGCCTC-GGAAGTCTAGGAG  149

seq1  TCAC-ACTTTAGC-TTTGCATAACATACCCTGCCTGTATACTGCTTGTGC  190
      |||| |||||||| ||||||||||||||||||| ||||| ||||||||||
seq2  TCACAACTTTAGCTTTTGCATAACATACCCTGCATGTATCCTGCTTGTGC  199

seq1  TGAGCCCGAGAAACC-AACCGGGTGATGACCTCCCAACCCACAACAGGGA  239
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAGCCCGAGAAACCAAACCGGGTGATGACCTCCCAACCCACAACAGGGA  249

seq1  CCTTTCAGGTCTCCACTGCCCTCACGGGGGTTTTCTGAGGTGAGGAGACT  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAGGTCTCCACTGCCCTCACGGGGGTTTTCTGAGGTGAGGAGACT  299

seq1  GTCAACTTAGAACCACGTGGAGTGCTTGCCCCCGCTTCTGTGTGAATCTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTTAGAACCACGTGGAGTGCTTGCCCCCGCTTCTGTGTGAATCTG  349

seq1  AAACAACGAACAATACCTGGGCACGGAAGGTTGGGGGCGCCTGAGTCCCT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACGAACAATACCTGGGCACGGAAGGTTGGGGGCGCCTGAGTCCCT  399

seq1  CGACGAGTGAAGTCTTCATATCCAAATGCGGGGTCCTCCACAAAGCATAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACGAGTGAAGTCTTCATATCCAAATGCGGGGTCCTCCACAAAGCATAG  449

seq1  GATGTCTGGGTGTGGAGAAGGCTCCAGGATATCCGCTGAGGGCCGCATCA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGGGTGTGGAGAAGGCTCCAGGATATCCGCTGAGGGCCGCATCA  499

seq1  AAAAGAAGGGACAGTGAGGCTGAGAACACAGCAGGTTCCCCGTCATCAGG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGGGACAGTGAGGCTGAGAACACAGCAGGTTCCCCGTCATCAGG  549

seq1  AAGGTGGAGTTGGGGGCATGGGGGTTGGGGTGGGGGGTGGGGAGGAGAGT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGAGTTGGGGGCATGGGGGTTGGGGTGGGGGGTGGGGAGGAGAGT  599

seq1  ATAGCAGGGACCACAGAGAGCCCCTCCCCACACGAAGTGGGAAGGTGTTA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGGGACCACAGAGAGCCCCTCCCCACACGAAGTGGGAAGGTGTTA  649

seq1  GCTAGAGCCACTCCTGGAGAGGAGGTGACTCCTACCCAAGGACCCAGAAT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGCCACTCCTGGAGAGGAGGTGACTCCTACCCAAGGACCCAGAAT  699

seq1  GCAACCCCCTCACCCCCAGCAATAATGACAGTTTTACAGAATGGCTCAGC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCCCTCACCCCCAGCAATAATGACAGTTTTACAGAATGGCTCAGC  749

seq1  CTGGGAAAGACTGCGAGCTTGGCTCCATCTACCTCACACAAGCCCTGAAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAAGACTGCGAGCTTGGCTCCATCTACCTCACACAAGCCCTGAAT  799

seq1  TCAGGGCTAACAGACCAGGATTCAATGAAAGGCAAGAATTC  830
      |||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCTAACAGACCAGGATTCAATGAAAGGCAAGAATTC  840

seq1: chr4_131904557_131905207
seq2: B6Ng01-279I11.g_64_718

seq1  GAATTCCAGTAAACATTTGGTGTGAAGGTTGTCTTAGAGATATGACCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAAACATTTGGTGTGAAGGTTGTCTTAGAGATATGACCAAG  50

seq1  TAAGACTTAAAACAGGGCCAGGCGTGGTGGCACATGCCTTTAATCCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTAAAACAGGGCCAGGCGTGGTGGCACATGCCTTTAATCCCAGC  100

seq1  ACTCCGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTC  150

seq1  TACAAAGTGAGTTCCAGGGCAGCCAGGGCTATACAGAGAAACCCTGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTGAGTTCCAGGGCAGCCAGGGCTATACAGAGAAACCCTGTCTT  200

seq1  GAAAAACAAACAAACAAACAAACAAAGACTTAAAACAGGGCTGGAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACAAACAAACAAACAAACAAAGACTTAAAACAGGGCTGGAGAGAT  250

seq1  GGCTCAGCAGTTAAAAGCTCTGACTGCTCTTCTAGAGGGTCAGAGTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCAGTTAAAAGCTCTGACTGCTCTTCTAGAGGGTCAGAGTTCAA  300

seq1  TTCCCAGTAACCACATGGCGGCTCACAACCATCTGTAATGAGATCCGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTAACCACATGGCGGCTCACAACCATCTGTAATGAGATCCGATG  350

seq1  CCCTCTTCTGGTGTGTCTGAACAGCTACAGTGTGCTCATATGCATAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGGTGTGTCTGAACAGCTACAGTGTGCTCATATGCATAAATC  400

seq1  TTATGGGGTGAGGTTGGGGACTTAAAAGCAATGAATGATGCTTAAAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGGTGAGGTTGGGGACTTAAAAGCAATGAATGATGCTTAAAGTCT  450

seq1  GCACATATATGAACTTGGGTATCACCCTACTGCCTTCCCAGATGTGCA-T  499
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCACATATATGAACTTGGGTATCACCCTACTGCCTTCCCAGATGTGCATT  500

seq1  TTTCTGGGTATCTCAATACTTACAGTAAACTTATAGGGTATTA-TCTGTC  548
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTCTGGGTATCTCAATACTTACAGTAAACTTATAGGGTATTATTCTGTC  550

seq1  ATGATCTTATCCAGTGCACCCCAGGAACCA-CCCATGGTCATTCCCATTT  597
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGATCTTATCCAGTGCACCCCAGGAACCACCCCATGGTCATTCCCATTT  600

seq1  CTCAAGGGACTTTTTGAAGCCCAGCTGTGTGTGTGTGTGAAG-ACAATTA  646
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTCAAGGGACTTTTTGAAGCCCAGCTGTGTGTGTGTGTGAAGAACAATTA  650

seq1  AGCAA  651
      | |||
seq2  ACCAA  655