BAC Information

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BAC

Clone NameB6Ng01-280A17
Chromosome4 (Build37)
Map Location 10,442,184 - 10,598,846
singlet/doubletdoublet
Overlap genenone
Upstream geneAsph, Gdf6, 4930448K20Rik, LOC666840
Downstream gene1700123O12Rik, LOC383991, LOC100039656, LOC545589, 2610301B20Rik, LOC383992, LOC100039746, Plekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280A17.bB6Ng01-280A17.g
ACCGA079873GA079874
length1,154807
definitionB6Ng01-280A17.b B6Ng01-280A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,597,679 - 10,598,846)(10,442,184 - 10,442,989)
sequence
gaattctactgtagagtaagctatcacagttcctttctgtggttaaagct
gagtcaggcacattacgttcttttacttgtttctgatttttaaaaaaatt
cctttattttggtttttaaaaaagtatataaatattttcaattgtaatat
ttaaaaaaaataagattcctattccatcctcttcaatctaccctacgacc
aaagaaatccatatatatacagataaattttcctttaatcagtagaacag
ttagatatttcatttggcctcaggacaccagcagaaaattaattggatgc
taagggcattaagaagtttggggatctgtgtagaataaagaagggtccca
catttctttttccagctgcatagtacccctttgggtggacacactataat
taattccaccaggtctctgttgataggcttctgggttgtttccagcattt
cgctctttcagatagtgctgaaatgaacagcctggtccatatgccttttt
gtttctttgccagtgtttctgtggaagagattcctagaagtgtgatggct
gggtcaaagggtaaatacgtaagacgttttgcttgaaactgccaaattcc
ccttcacaggggttgaagcatcttgcattctcattgtcaaaatgtgagca
tgtttattgcccgccgtctggcctgctgagcatgatgtcagagctttgga
cttttgccaacaagataggtgagaaaatgatatttcactgtagctttaat
ttgcatttctcttattacaaaaaagttgagtcgtttttccttctgtgaat
tgtgcctttgtttgtctaaagaaacaatactcttgtgtttttcttttcca
catttagactttcatttaaaaaaaaaattacattttttccctgatttgta
ttagtctctttagttgggcattatggtgttgtttcttttctctgtgaaaa
ttctctcatgttactgacttaaaactgtgtcacaggaaggtttcttgatt
ggtgaactcatgtccccatcctcgttgacgcttatactggagtctagaag
agagtgggaaggcacgtaggaaaatcatgcaaatttgggaggctagacat
tcccagtcatgaatggtcaggacctaaattattttgtgggatttcatgac
atga
gaattctttttgagccaaagtttaagtgtgtaaaatgtaagtttatccat
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctttacacttagatgaca
cctcaaactcccattcattgcttatggtggcataatttaatactactgtt
ttctgggtagatcaggtggcctcaaattctcagtcagaagtacttggtac
tgtcacttttgactctatatatcaacgtcctctgagcctctgggtgttaa
tagatgtaacagttaaaagtggaagggtttgaccatcaagacggactccc
tacaagctttcaagatacaaaaagaaaaaagaaaaggaaaagaagtggat
gcatgctatagtgttggtcaaaaagaatcttacccagaagatccaatcag
tcatgaataggaagtgaggaaccctggagaatttattctggcagtgatga
cagcagtaccatccaaagcactattctgggagtggtggaagttgactgca
ttggtgtctgctgtccatttctgactgtagtgttgccaatgctggtgtca
ctggtatctaactagatgcttcctgtgctgtggttttggctgaaaggagt
cccacccttctctgagctcattgattctcttctccttctctgcttatgct
aaatagagtaaagctttcttgtctataaccaaaatcctaacaagttcttc
catttgctcctaaaatccctctgagagggtaggggaaagcaatcaggatg
catggagcttgcggagcagcatcccatgaatctaaccccaggtggtgact
tgttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_10597679_10598846
seq2: B6Ng01-280A17.b_47_1200 (reverse)

seq1  TCATGTCAAAAGGAAAACCCACAAAAATAATTTAGGTCTTGACCATTCAA  50
      |||||||   | |||| ||||| ||||||||||||||| |||||||||| 
seq2  TCATGTC---ATGAAATCCCAC-AAAATAATTTAGGTCCTGACCATTCAT  46

seq1  GGGAACTGGGATTTGTCTAGCTTCCCAAATTTGGCATGATTTTCTTACGT  100
      |   |||||||  |||||||| |||||||||| ||||||||||| |||| 
seq2  G---ACTGGGA-ATGTCTAGCCTCCCAAATTT-GCATGATTTTCCTACG-  90

seq1  TGCCTTCCCAACTCTC-TCTAGACTCCAGTATAGCCGTCAAACGAGGATG  149
      ||||||||| |||||| ||||||||||||||||  |||| ||||||||||
seq2  TGCCTTCCC-ACTCTCTTCTAGACTCCAGTATAAGCGTC-AACGAGGATG  138

seq1  GGGACATGAGTTCACCAAATCAAGAAACCTTCCTGTGACACAGTTTTTAA  199
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  GGGACATGAGTTCACC-AATCAAGAAACCTTCCTGTGACACAG-TTTTAA  186

seq1  GTCAGTAACATGAGAGAATTTTCACAGAGAAAAGAAACAACACCATAATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTAACATGAGAGAATTTTCACAGAGAAAAGAAACAACACCATAATG  236

seq1  CCCAACTAAAGAGACTAATTACAAATCAGGGAAAAAATGTAATTTTTTTT  299
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCAACTAAAGAGACTAA-TACAAATCAGGGAAAAAATGTAATTTTTTTT  285

seq1  TTAAATGAAAGTCTAAATGTGGAAAAGAAAAACACAAGAGTATTGTTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAAAGTCTAAATGTGGAAAAGAAAAACACAAGAGTATTGTTTCT  335

seq1  TTAGACAAACAAAGGCACAATTCACAGAAGGAAAAACGACTCAACTTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAAACAAAGGCACAATTCACAGAAGGAAAAACGACTCAACTTTTT  385

seq1  TGTAATAAGAGAAATGCAAATTAAAGCTACAGTGAAATATCATTTTCTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAGAGAAATGCAAATTAAAGCTACAGTGAAATATCATTTTCTCA  435

seq1  CCTATCTTGTTGGCAAAAGTCCAAAGCTCTGACATCATGCTCAGCAGGCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTTGTTGGCAAAAGTCCAAAGCTCTGACATCATGCTCAGCAGGCC  485

seq1  AGACGGCGGGCAATAAACATGCTCACATTTTGACAATGAGAATGCAAGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGCGGGCAATAAACATGCTCACATTTTGACAATGAGAATGCAAGAT  535

seq1  GCTTCAACCCCTGTGAAGGGGAATTTGGCAGTTTCAAGCAAAACGTCTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAACCCCTGTGAAGGGGAATTTGGCAGTTTCAAGCAAAACGTCTTA  585

seq1  CGTATTTACCCTTTGACCCAGCCATCACACTTCTAGGAATCTCTTCCACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTTACCCTTTGACCCAGCCATCACACTTCTAGGAATCTCTTCCACA  635

seq1  GAAACACTGGCAAAGAAACAAAAAGGCATATGGACCAGGCTGTTCATTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACTGGCAAAGAAACAAAAAGGCATATGGACCAGGCTGTTCATTTC  685

seq1  AGCACTATCTGAAAGAGCGAAATGCTGGAAACAACCCAGAAGCCTATCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTATCTGAAAGAGCGAAATGCTGGAAACAACCCAGAAGCCTATCAA  735

seq1  CAGAGACCTGGTGGAATTAATTATAGTGTGTCCACCCAAAGGGGTACTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACCTGGTGGAATTAATTATAGTGTGTCCACCCAAAGGGGTACTAT  785

seq1  GCAGCTGGAAAAAGAAATGTGGGACCCTTCTTTATTCTACACAGATCCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGAAAAAGAAATGTGGGACCCTTCTTTATTCTACACAGATCCCC  835

seq1  AAACTTCTTAATGCCCTTAGCATCCAATTAATTTTCTGCTGGTGTCCTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTTAATGCCCTTAGCATCCAATTAATTTTCTGCTGGTGTCCTGA  885

seq1  GGCCAAATGAAATATCTAACTGTTCTACTGATTAAAGGAAAATTTATCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAATGAAATATCTAACTGTTCTACTGATTAAAGGAAAATTTATCTG  935

seq1  TATATATATGGATTTCTTTGGTCGTAGGGTAGATTGAAGAGGATGGAATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATGGATTTCTTTGGTCGTAGGGTAGATTGAAGAGGATGGAATA  985

seq1  GGAATCTTATTTTTTTTAAATATTACAATTGAAAATATTTATATACTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTTATTTTTTTTAAATATTACAATTGAAAATATTTATATACTTTT  1035

seq1  TTAAAAACCAAAATAAAGGAATTTTTTTAAAAATCAGAAACAAGTAAAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACCAAAATAAAGGAATTTTTTTAAAAATCAGAAACAAGTAAAAG  1085

seq1  AACGTAATGTGCCTGACTCAGCTTTAACCACAGAAAGGAACTGTGATAGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTAATGTGCCTGACTCAGCTTTAACCACAGAAAGGAACTGTGATAGC  1135

seq1  TTACTCTACAGTAGAATTC  1168
      |||||||||||||||||||
seq2  TTACTCTACAGTAGAATTC  1154

seq1: chr4_10442184_10442989
seq2: B6Ng01-280A17.g_69_875

seq1  GAATTCTTTTTGAGCCAAAGTTTAAGTGTGTAAAATGTAAGTTTATCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGAGCCAAAGTTTAAGTGTGTAAAATGTAAGTTTATCCAT  50

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTACACTTAGATGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTTTACACTTAGATGACA  100

seq1  CCTCAAACTCCCATTCATTGCTTATGGTGGCATAATTTAATACTACTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACTCCCATTCATTGCTTATGGTGGCATAATTTAATACTACTGTT  150

seq1  TTCTGGGTAGATCAGGTGGCCTCAAATTCTCAGTCAGAAGTACTTGGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTAGATCAGGTGGCCTCAAATTCTCAGTCAGAAGTACTTGGTAC  200

seq1  TGTCACTTTTGACTCTATATATCAACGTCCTCTGAGCCTCTGGGTGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTTTGACTCTATATATCAACGTCCTCTGAGCCTCTGGGTGTTAA  250

seq1  TAGATGTAACAGTTAAAAGTGGAAGGGTTTGACCATCAAGACGGACTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTAACAGTTAAAAGTGGAAGGGTTTGACCATCAAGACGGACTCCC  300

seq1  TACAAGCTTTCAAGATACAAAAAGAAAAAAGAAAAGGAAAAGAAGTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCTTTCAAGATACAAAAAGAAAAAAGAAAAGGAAAAGAAGTGGAT  350

seq1  GCATGCTATAGTGTTGGTCAAAAAGAATCTTACCCAGAAGATCCAATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTATAGTGTTGGTCAAAAAGAATCTTACCCAGAAGATCCAATCAG  400

seq1  TCATGAATAGGAAGTGAGGAACCCTGGAGAATTTATTCTGGCAGTGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAATAGGAAGTGAGGAACCCTGGAGAATTTATTCTGGCAGTGATGA  450

seq1  CAGCAGTACCATCCAAAGCACTATTCTGGGAGTGGTGGAAGTTGACTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTACCATCCAAAGCACTATTCTGGGAGTGGTGGAAGTTGACTGCA  500

seq1  TTGGTGTCTGCTGTCCATTTCTGACTGTAGTGTTGCCAATGCTGGTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTCTGCTGTCCATTTCTGACTGTAGTGTTGCCAATGCTGGTGTCA  550

seq1  CTGGCATCTAACTAGATGCTTCCTGTGCTGTGGTTTTGGCTGAAAGGAGT  600
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATCTAACTAGATGCTTCCTGTGCTGTGGTTTTGGCTGAAAGGAGT  600

seq1  CCCACCCTTCTCTGAGCTCATTGATTCTCTTCTCCTTCTCTGCTTATGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCTTCTCTGAGCTCATTGATTCTCTTCTCCTTCTCTGCTTATGCT  650

seq1  AAATAGAGT-AAGCTTTCTTGTCTATAACCAAAATCCTAACAAGTTCTTC  699
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGTAAAGCTTTCTTGTCTATAACCAAAATCCTAACAAGTTCTTC  700

seq1  CATTTGCTCCTAAAATCCCTCTGAGAGGGTAGGGGAAAGCAATCAGGATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTCCTAAAATCCCTCTGAGAGGGTAGGGGAAAGCAATCAGGATG  750

seq1  CATGGAGCTTTGCGGAGCAGCATCCCATGAATCTAA-CCCAGGTGGTGAC  798
      |||||||| ||||||||||||||||||||||||||| |||||||||||||
seq2  CATGGAGC-TTGCGGAGCAGCATCCCATGAATCTAACCCCAGGTGGTGAC  799

seq1  TTGTTCCA  806
      ||||||||
seq2  TTGTTCCA  807