BAC Information

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BAC

Clone NameB6Ng01-280G03
Chromosome4 (Build37)
Map Location 92,029,875 - 92,132,206
singlet/doubletdoublet
Overlap genenone
Upstream geneElavl2, LOC664864, LOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125, Tusc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280G03.bB6Ng01-280G03.g
ACCGA080124GA080125
length1,0751,067
definitionB6Ng01-280G03.b B6Ng01-280G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,131,667 - 92,132,206)(92,029,875 - 92,030,949)
sequence
gaattcactttgtagagcaggctggcctcgatcccagaaatccgcctgcc
tctgcctcccgatgctgggattaaaggcatgtgccaccacgcccggttta
gaatgctagcatttccaaacaaaggatattactctagggctcagtgggca
tgcgtgtgtactgcttttgacaaggagcaagttgtgtacccaacagtaag
tcagagatatcacaacgactccattaagattttgctagtataaaaattct
actgtaatctagaaaacagtttagtttttggttcactttagaaagtttta
acaacaaatggaaaaatgatctctagaagaaataaaagtaaaaccaaaac
gaatgctcaaaatggtgacaaatgtgtacatgtccttctcccttttctaa
taagaacttaatcagtggatgaggtaaaatctaagtgcttcatcttaggt
gtgtgagggaactgaggtcacaaggggagcactgctctaacacagattga
tggtcagatagaaagaatgtcattttactagagcagggaaaaggagcaag
cacagaagagaactgggaattggcattggagaggagaccaagattgtaat
caaaatacttgggagcttcagtatgtcaaaacccaagagaagaaagtgca
aggaaaaaggtcatcaggaactgtattctttcatgttaaccccttttgga
gatctaccatgctttctgtgtgagcacctcaggaacatatccccaagctt
cccccagggtgaagagattaagaattgctctgatgtccttagactgcagt
tactaaagaggtgtgcctgagaagaaagtgatgaaccctagactgatctg
cagcagtttcccagagtataactagctagtgggaaggcaaaagcccaatt
ctaaatccttctggctatagtgccaaattatcacagagggatagggagat
agagggaatagagaagttagtattccctgaatatacgtgatgctattttg
ggttttgtgtttgttttgagaaaaggatctccctgtacacaacagaaaat
gcttagggtctattaagaattatac

gaattcaacatatgaggtaaaacttaagagctgattattttaaagtgtag
gctgacaggaatggaaataaacaatttttgttacatttaccatgacttta
atttgatcttctttaaagtgagatatggaaaatacaggttacattttaca
aaaagactaacaagtccattctttgtattcaacatcaggtttgatttctt
aaaatgagcaaaatataaatagtagtaaacattaaaattttctaataaag
gttaaatattttaatgtcctagactagttctaagaccagtgatagctaaa
aatcaaacttaaaatatcaaattatggctatgatctcatggtgaactcta
tgtggaaggaaatatactgcatttaatttaatgtctaactcttttataaa
tatccaagagggatgagctaaagccaagttggaaataccaggagaacaat
aacagaaagtaaaaacaatgaaacaggcttggcagcattgaaaatgaaga
actcataactacacacaatagacttcactgctcgctggtcttcagattgc
tttcataccccatggaattgaacaaataaagccaaatacatgccatttga
agggaacagaaatatcttacagtgggaaatattctaggtggcagaaagaa
aaagtttcaataactcaaacaaatgaaacattactcagaaatatttaaca
atagatctttaaagtgaatggttaagaaacaacatatgcaaaatgacttg
gcaggttaaaatatcatgacattcatattgttccttttccaaaacattaa
tatgtaattttgcaaggaaactacatatctaaaactttgaaaattgcagt
ttcccatagatatactttgataaatacaagcatatagttaacatatatac
ttaaatatgctttgaaaagtactatcaaccacaatgtttaccataatata
gataaaaattaggtaccctgcttggatgtatacaatgccattgtaaaatg
agtggaagaagtgctgaaagagataggcatgattaaaaaatgaaagacac
agcaacatacaaatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_92131667_92132206
seq2: B6Ng01-280G03.b_578_1118 (reverse)

seq1  GTATAA-TCTT-ATAGACCTTAAGCA-TTTCTGTTGTGTACAGGGAGA-C  46
      |||||| |||| ||||||| |||||| ||||||||||||||||||||| |
seq2  GTATAATTCTTAATAGACCCTAAGCATTTTCTGTTGTGTACAGGGAGATC  50

seq1  CTTTTCTCAAAAACAAACACAAAA-CCAAAATAGCATCACCGTATATTCA  95
      |||||||| ||||||||||||||| |||||||||||||| ||||||||||
seq2  CTTTTCTC-AAAACAAACACAAAACCCAAAATAGCATCA-CGTATATTCA  98

seq1  -GGAATACCTACTTCTCTATTCCCTCTTATCTCCCTATCCCTCCTGTGAT  144
       |||||||  |||||||||||||||| ||||||||||||||| |||||||
seq2  GGGAATACTAACTTCTCTATTCCCTC-TATCTCCCTATCCCT-CTGTGAT  146

seq1  AATTTGGCACTATAGCCAGAAGGATTTAGAATTGGGCTTTTGCCTTCCCA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGCACTATAGCCAGAAGGATTTAGAATTGGGCTTTTGCCTTCCCA  196

seq1  CTAGCTAGTTATACTCTGGGAAACCTGCTGCAGATCAGTCTAGGGTTCAT  244
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTAGCTAGTTATACTCTGGGAAA-CTGCTGCAGATCAGTCTAGGGTTCAT  245

seq1  CACTTTCTTCTCAGGCACACCTCCTTAGTAACTGCAGTCTAAGGACATCA  294
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CACTTTCTTCTCAGGCACACCTCTTTAGTAACTGCAGTCTAAGGACATCA  295

seq1  GAGCAATTCTTAATCTCTTCACCCTGGGGGAAGCTTGGGGATATGTTCCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATTCTTAATCTCTTCACCCTGGGGGAAGCTTGGGGATATGTTCCT  345

seq1  GAGGTGCTCACACAGAAAGCATGGTAGATCTCCAAAAGGGGTTAACATGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTCACACAGAAAGCATGGTAGATCTCCAAAAGGGGTTAACATGA  395

seq1  AAGAATACAGTTCCTGATGACCTTTTTCCTTGCACTTTCTTCTCTTGGGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACAGTTCCTGATGACCTTTTTCCTTGCACTTTCTTCTCTTGGGT  445

seq1  TTTGACATACTGAAGCTCCCAAGTATTTTGATTACAATCTTGGTCTCCTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATACTGAAGCTCCCAAGTATTTTGATTACAATCTTGGTCTCCTC  495

seq1  TCCAATGCCAATTCCCAGTTCTCTTCTGTGCTTGCTCCTTTTCCCT  540
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCCAATTCCCAGTTCTCTTCTGTGCTTGCTCCTTTTCCCT  541


seq1: chr4_92029875_92030949
seq2: B6Ng01-280G03.g_66_1132

seq1  GAATTCAACATATGAGGTAAAACTTAAGAGCTGATTATTTTAAAGTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACATATGAGGTAAAACTTAAGAGCTGATTATTTTAAAGTGTAG  50

seq1  GCTGACAGGAATGGAAATAAACAATTTTTGTTACATTTACCATGACTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAGGAATGGAAATAAACAATTTTTGTTACATTTACCATGACTTTA  100

seq1  ATTTGATCTTCTTTAAAGTGAGATATGGAAAATACAGGTTACATTTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATCTTCTTTAAAGTGAGATATGGAAAATACAGGTTACATTTTACA  150

seq1  AAAAGACTAACAAGTCCATTCTTTGTATTCAACATCAGGTTTGATTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTAACAAGTCCATTCTTTGTATTCAACATCAGGTTTGATTTCTT  200

seq1  AAAATGAGCAAAATATAAATAGTAGTAAACATTAAAATTTTCTAATAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGCAAAATATAAATAGTAGTAAACATTAAAATTTTCTAATAAAG  250

seq1  GTTAAATATTTTAATGTCCTAGACTAGTTCTAAGACCAGTGATAGCTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATATTTTAATGTCCTAGACTAGTTCTAAGACCAGTGATAGCTAAA  300

seq1  AATCAAACTTAAAATATCAAATTATGGCTATGATCTCATGGTGAACTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACTTAAAATATCAAATTATGGCTATGATCTCATGGTGAACTCTA  350

seq1  TGTGGAAGGAAATATACTGCATTTAATTTAATGTCTAACTCTTTTATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGGAAATATACTGCATTTAATTTAATGTCTAACTCTTTTATAAA  400

seq1  TATCCAAGAGGGATGAGCTAAAGCCAAGTTGGAAATACCAGGAGAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAGAGGGATGAGCTAAAGCCAAGTTGGAAATACCAGGAGAACAAT  450

seq1  AACAGAAAGTAAAAACAATGAAACAGGCTTGGCAGCATTGAAAATGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAGTAAAAACAATGAAACAGGCTTGGCAGCATTGAAAATGAAGA  500

seq1  ACTCATAACTACACACAATAGACTTCACTGCTCGCTGGTCTTCAGATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAACTACACACAATAGACTTCACTGCTCGCTGGTCTTCAGATTGC  550

seq1  TTTCATACCCCATGGAATTGAACAAATAAAGCCAAATACATGCCATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACCCCATGGAATTGAACAAATAAAGCCAAATACATGCCATTTGA  600

seq1  AGGGAACAGAAATATCTTACAGTGGGAAATATTCTAGGTGGCAGAAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACAGAAATATCTTACAGTGGGAAATATTCTAGGTGGCAGAAAGAA  650

seq1  AAAGTTTCAATAACTCAAACAAATGAAACATTACTCAGAAATATTTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCAATAACTCAAACAAATGAAACATTACTCAGAAATATTTAACA  700

seq1  ATAGATCTTTAAAGTGAATGGTTAAGAAACAACATATGCAAAATGACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCTTTAAAGTGAATGGTTAAGAAACAACATATGCAAAATGACTTG  750

seq1  GCAGGTTAAAATATCATGACATTCATATTGTTCCTTTTCCAAAACATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTTAAAATATCATGACATTCATATTGTTCCTTTTCCAAAACATTAA  800

seq1  TATGTAATTTTGCAAGGAAACTACATATCTAAAACTTTGAAAATTGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATTTTGCAAGGAAACTACATATCTAAAACTTTGAAAATTGCAGT  850

seq1  TTCCCATAGATATACTTTGATAAATACAAGCATATAGTTAACATATATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATAGATATACTTTGATAAATACAAGCATATAGTTAACATATATAC  900

seq1  TTAAATATGCTTTGAAAAGTACTATCAACCACAATGTTTACCATAATATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATGCTTTGAAAAGTACTATCAACCACAATGTTTACCATAATATA  950

seq1  GAT-AAAATTAGGTACCCTGCTTGGATGTATACAATGCCATTGTAAAAAT  999
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  GATAAAAATTAGGTACCCTGCTTGGATGTATACAATGCCATTGT-AAAAT  999

seq1  GAGTGGAAGAAGTGCTGGAAAAGAGATAGGGCATTGATTAAAAAATGAAA  1049
      |||||||||||||||||  ||||||||| |||| ||||||||||||||||
seq2  GAGTGGAAGAAGTGCTG--AAAGAGATA-GGCA-TGATTAAAAAATGAAA  1045

seq1  GGACCACAAGCCAACATACAAATGAC  1075
      |    |||   |||||||||||||||
seq2  G----ACACAGCAACATACAAATGAC  1067


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