BAC Information

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BAC

Clone NameB6Ng01-280L24
Chromosome4 (Build37)
Map Location 75,834,209 - 75,901,110
singlet/doubletdoublet
Overlap genePtprd
Upstream gene3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280L24.bB6Ng01-280L24.g
ACCGA080399GA080400
length1,0961,090
definitionB6Ng01-280L24.b B6Ng01-280L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,834,209 - 75,835,317)(75,900,026 - 75,901,110)
sequence
gaattcaaagccatgcctcctgcagtaactctggtgagcattgagaagca
gattatggttggctattggtaaatactctaatttcaggaaagcgaaaaca
agaatgtgtgtatctacacaaagcagaaagcaatgaatgataaagtacaa
attaatggagttcaaaataaagcagaaagagaaagaactgaggagacagc
attctatgtctcaacacggtaattaaaactttaaacttctgctgagtctg
attaagacaaaaggaataggcagaaatacacattgtgagtaatttaaaaa
ttgacagaattatagacaaataagaggatgtttttagatactgggagaga
atcaaagaaaatatgtttatagaacttcaaaaataaagtaagagtgaggt
ttcttaaaaaatacatattactgagcatgataaataatttttttaaatgg
tcaggataatgaaatacagaagaggctctcagttaatgacaggaataacc
atatagctgcattttcaattgagagaaagcatacaatcaggcaacacagt
gcagagacaaccagagttcagtaaagagggacataattagaccaccactc
atactaaggaggaagggctacttgaaaggattaaaggatgaataattgtg
ggaaaatagaattactgaataaatttagaaggttaagtctttcataaggt
tctcaaatgacataagaagaaataattataaagaaaggatatatttgact
ctatgtgctttctgttactccttaaaaaaaaggaagcagacctcatggac
tgacactgtattgaagatgaaacacacatagcagagaagcataaaatgta
cctcactaggagccaaaggaagaaacagacagtaagataaactgtttcac
gctgctcagaatggcaaatttaacgctgcactcacccaatccagcaagtg
taggtagaaaatacaaatcttgctattgctgggtagaaacacaagtaaat
aactattagagaaaatgatgatgtataggtttctgtgtaattttctttca
ctggctggatgatatatgtagcaagttcctagatattctctgctat

gaattcaattattttatatgtagataaaattgatttaatagtttgttgat
agagcaaaataaatacacaggaccacgggagtcactaaaatggaaagaaa
atcctaaaaacaaagtcagaatgtattaattattgtaatataatttctat
gaaaagttttctccctaagagtttcagaaacaagtttgaaaatctaacat
attcctacctactttgacccatttaatctgaaaattaattttatattata
cagttatatattcagatttctctaacaaactcttcttttttcttgatatt
tgtgactttatcaccaggaatgacgtttttatgtctaaacaaaaaaatgt
tcaaaccagggttaaaagaatttcttctttgggtggtggatcagccagtg
cccttctcaagctcatttttgatctccaacttctacctcttagtttaaaa
tacatgaaagtttggaaatgataaagttataatttttagtattaatcatg
gctcagataaatagaccactaaaaaatgtaactgtgaatgcttacattat
ttttcaaacccagtttattaaaatttgtgaaaagcttttaagtttttatt
tttcagcctatatgtaataatttataatatatgttggaattttacattaa
gaataaagagcatcacagttatatacaaacatgagacaataattttaaga
atgcttatcagagtctttttatgatactgaaagagaaatgactgaaatcc
tttgacaatttaaaaaagtctatttacatacttaatgaaataaaattgtt
gttttaaaattttaattgatctagatgtattttaaatataattctgtcat
agctgctatttaatttgtttagatgagatggaaaatgctaaaaattattc
attgacataaagtataggacattcccagtattctcttatctctattatcc
acctgaaaacaatttgtacaggaacatggtagggtctgtgaggtgatcaa
ggttgcaagtttcttctcaagctagtgcctcatgtgttacagacgaagca
tagacctctatagtacctagagtgaaatatgtgcctatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_75834209_75835317
seq2: B6Ng01-280L24.b_43_1138

seq1  GAATTCAAAGCCATGCCTCCTGCAGTAACTCTGGTGAGCATTGAGAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCATGCCTCCTGCAGTAACTCTGGTGAGCATTGAGAAGCA  50

seq1  GATTATGGTTGGCTATTGGTAAATACTCTAATTTCAGGAAAGCGAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGGTTGGCTATTGGTAAATACTCTAATTTCAGGAAAGCGAAAACA  100

seq1  AGAATGTGTGTATCTACACAAAGCAGAAAGCAATGAATGATAAAGTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGTGTATCTACACAAAGCAGAAAGCAATGAATGATAAAGTACAA  150

seq1  ATTAATGGAGTTCAAAATAAAGCAGAAAGAGAAAGAACTGAGGAGACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGGAGTTCAAAATAAAGCAGAAAGAGAAAGAACTGAGGAGACAGC  200

seq1  ATTCTATGTCTCAACACGGTAATTAAAACTTTAAACTTCTGCTGAGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATGTCTCAACACGGTAATTAAAACTTTAAACTTCTGCTGAGTCTG  250

seq1  ATTAAGACAAAAGGAATAGGCAGAAATACACATTGTGAGTAATTTAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGACAAAAGGAATAGGCAGAAATACACATTGTGAGTAATTTAAAAA  300

seq1  TTGACAGAATTATAGACAAATAAGAGGATGTTTTTAGATACTGGGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGAATTATAGACAAATAAGAGGATGTTTTTAGATACTGGGAGAGA  350

seq1  ATCAAAGAAAATATGTTTATAGAACTTCAAAAATAAAGTAAGAGTGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGAAAATATGTTTATAGAACTTCAAAAATAAAGTAAGAGTGAGGT  400

seq1  TTCTTAAAAAATACATATTACTGAGCATGATAAATAATTTTTTTAAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAAAATACATATTACTGAGCATGATAAATAATTTTTTTAAATGG  450

seq1  TCAGGATAATGAAATACAGAAGAGGCTCTCAGTTAATGACAGGAATAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATAATGAAATACAGAAGAGGCTCTCAGTTAATGACAGGAATAACC  500

seq1  ATATAGCTGCATTTTCAATTGAGAGAAAGCATACAATCAGGCAACACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGCTGCATTTTCAATTGAGAGAAAGCATACAATCAGGCAACACAGT  550

seq1  GCAGAGACAACCAGAGTTCAGTAAAGAGGGACATAATTAGACCACCACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGACAACCAGAGTTCAGTAAAGAGGGACATAATTAGACCACCACTC  600

seq1  ATACTAAGGAGGAAGGGCTACTTGAAAGGATTAAAGGATGAATAATTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAGGAGGAAGGGCTACTTGAAAGGATTAAAGGATGAATAATTGTG  650

seq1  GGAAAATAGAATTACTGAATAAATTTAGAAGGTTAAGTCTTTCATAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATAGAATTACTGAATAAATTTAGAAGGTTAAGTCTTTCATAAGGT  700

seq1  TCTCAAATGACATAAGAAGAAATAATTATAAAGAAAGGATATATTTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAATGACATAAGAAGAAATAATTATAAAGAAAGGATATATTTGACT  750

seq1  CTATGTGCTTTCTGTTACTCCTTAAAAAAAAGGAAGCAGACCTCATGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGCTTTCTGTTACTCCTTAAAAAAAAGGAAGCAGACCTCATGGAC  800

seq1  TGACACTGTATTGAAGATGAAACACACATAGCAGAGAAGCATAAAATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGTATTGAAGATGAAACACACATAGCAGAGAAGCATAAAATGTA  850

seq1  CCTCACTAGGAGCC-AAGGAAGAAACAGACAGTAAGATAAACTGTTTCAC  899
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTCACTAGGAGCCAAAGGAAGAAACAGACAGTAAGATAAACTGTTTCAC  900

seq1  GCTGCTCAGAATGGCAAATTTAAGGCTGCACTCACCCAAATCCAGCAAGT  949
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  GCTGCTCAGAATGGCAAATTTAACGCTGCACTCACCC-AATCCAGCAAGT  949

seq1  GTAGGTAGAAAATACAAATCTTGCTATTGCT-GGTAGAAACACAAAGTAA  998
      ||||||||||||||||||||||||||||||| ||||||||||| |||| |
seq2  GTAGGTAGAAAATACAAATCTTGCTATTGCTGGGTAGAAACAC-AAGT-A  997

seq1  AATAACTATTAGAAGAAAATGATGATGTTAATAAGGTTTCTGTGTAATTT  1048
      |||||||||||| |||||||||||||||  || |||||||||||||| ||
seq2  AATAACTATTAG-AGAAAATGATGATGT--AT-AGGTTTCTGTGTAA-TT  1042

seq1  TTCTTTTCCAACTGGGCTTGATGATATTAATGTAGGCAAGTTCCTAGAAT  1098
      ||||||    ||| |||| ||||||||  ||||| |||||||||||||  
seq2  TTCTTT---CACT-GGCTGGATGATAT--ATGTA-GCAAGTTCCTAGATA  1085

seq1  ATCTCTGCTAT  1109
       ||||||||||
seq2  TTCTCTGCTAT  1096


seq1: chr4_75900026_75901110
seq2: B6Ng01-280L24.g_64_1153 (reverse)

seq1  TGATA-GCACATATTTCACTCTAGGTACTATAGA-GTCTATGCTTCCTTC  48
      ||||| |||||||||||||||||||||||||||| |||||||||| | ||
seq2  TGATAGGCACATATTTCACTCTAGGTACTATAGAGGTCTATGCTT-CGTC  49

seq1  TGTACCACATGA-GCACTAGCTTGAG-AGAAACCTGCAACC-TGATCACC  95
      |||| ||||||| ||||||||||||| |||||| ||||||| ||||||||
seq2  TGTAACACATGAGGCACTAGCTTGAGAAGAAACTTGCAACCTTGATCACC  99

seq1  TCACAGACCCTACCATGTTCCTTGTACAAATTGTTTTCA-GTGGATAATA  144
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  TCACAGACCCTACCATGTTCC-TGTACAAATTGTTTTCAGGTGGATAATA  148

seq1  GAGATAAGAG-ATACTGGGAATGTCCTATACTTTATGTCAATGAATAATT  193
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGAGAATACTGGGAATGTCCTATACTTTATGTCAATGAATAATT  198

seq1  TTTAGCATTTTCCATCTCATCTAAACAAATTAAATAGCAGCTATGACAGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATTTTCCATCTCATCTAAACAAATTAAATAGCAGCTATGACAGA  248

seq1  ATTATATTTAAAATACATCTAGATCAATTAAAATTTTAAAACAACAATTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTAAAATACATCTAGATCAATTAAAATTTTAAAACAACAATTT  298

seq1  TATTTCATTAAGTATGTAAATAGACTTTTTTAAATTGTCAAAGGATTTCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATTAAGTATGTAAATAGACTTTTTTAAATTGTCAAAGGATTTCA  348

seq1  GTCATTTCTCTTTCAGTATCATAAAAAGACTCTGATAAGCATTCTTAAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTCTCTTTCAGTATCATAAAAAGACTCTGATAAGCATTCTTAAAA  398

seq1  TTATTGTCTCATGTTTGTATATAACTGTGATGCTCTTTATTCTTAATGTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTCTCATGTTTGTATATAACTGTGATGCTCTTTATTCTTAATGTA  448

seq1  AAATTCCAACATATATTATAAATTATTACATATAGGCTGAAAAATAAAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCAACATATATTATAAATTATTACATATAGGCTGAAAAATAAAAA  498

seq1  CTTAAAAGCTTTTCACAAATTTTAATAAACTGGGTTTGAAAAATAATGTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGCTTTTCACAAATTTTAATAAACTGGGTTTGAAAAATAATGTA  548

seq1  AGCATTCACAGTTACATTTTTTAGTGGTCTATTTATCTGAGCCATGATTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCACAGTTACATTTTTTAGTGGTCTATTTATCTGAGCCATGATTA  598

seq1  ATACTAAAAATTATAACTTTATCATTTCCAAACTTTCATGTATTTTAAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAAAATTATAACTTTATCATTTCCAAACTTTCATGTATTTTAAAC  648

seq1  TAAGAGGTAGAAGTTGGAGATCAAAAATGAGCTTGAGAAGGGCACTGGCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGTAGAAGTTGGAGATCAAAAATGAGCTTGAGAAGGGCACTGGCT  698

seq1  GATCCACCACCCAAAGAAGAAATTCTTTTAACCCTGGTTTGAACATTTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACCACCCAAAGAAGAAATTCTTTTAACCCTGGTTTGAACATTTTT  748

seq1  TTGTTTAGACATAAAAACGTCATTCCTGGTGATAAAGTCACAAATATCAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGACATAAAAACGTCATTCCTGGTGATAAAGTCACAAATATCAA  798

seq1  GAAAAAAGAAGAGTTTGTTAGAGAAATCTGAATATATAACTGTATAATAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAGAAGAGTTTGTTAGAGAAATCTGAATATATAACTGTATAATAT  848

seq1  AAAATTAATTTTCAGATTAAATGGGTCAAAGTAGGTAGGAATATGTTAGA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAATTTTCAGATTAAATGGGTCAAAGTAGGTAGGAATATGTTAGA  898

seq1  TTTTCAAACTTGTTTCTGAAACTCTTAGGGAGAAAACTTTTCATAGAAAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAACTTGTTTCTGAAACTCTTAGGGAGAAAACTTTTCATAGAAAT  948

seq1  TATATTACAATAATTAATACATTCTGACTTTGTTTTTAGGATTTTCTTTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTACAATAATTAATACATTCTGACTTTGTTTTTAGGATTTTCTTTC  998

seq1  CATTTTAGTGACTCCCGTGGTCCTGTGTATTTATTTTGCTCTATCAACAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGTGACTCCCGTGGTCCTGTGTATTTATTTTGCTCTATCAACAA  1048

seq1  ACTATTAAATCAATTTTATCTACATATAAAATAATTGAATTC  1085
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAAATCAATTTTATCTACATATAAAATAATTGAATTC  1090


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