BAC Information

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BAC

Clone NameB6Ng01-280N01
Chromosome4 (Build37)X (Build37)
Map Location 27,275,402 - 27,276,27914,280,321 - 14,280,594
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBhmt-ps1, LOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280N01.bB6Ng01-280N01.g
ACCGA080449GA080450
length8781,002
definitionB6Ng01-280N01.b B6Ng01-280N01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,275,402 - 27,276,279)(14,280,321 - 14,280,594)
sequence
gaattctctttgttttctttgttgtatgtatttccagtttgatcttgaat
agttttatgtcttttcttcaactgtttattcgtttttacccttcgtttta
ttttatggatttattaatttcatccatttttttttcatttttagctctgt
tggaatgttcaaaagttcctgtagtaggttctaactgggttctagctgtt
gttgactgtgttcttacactagagaataggctcctaggttctcattaaag
gtgtcagtgcctatttctgagtttgtgttttttggatgggtgatttgttt
cttggtttctgtttcctctcttatctctgaccagacttgcctgtggctga
ccagatattctccatcagatttggggactgaaattctgattatcagcttg
gactctagatgaatagtgtgcctctgtctgagtttcattcttggacaagg
caaagacaaggcaagggacagttggggtaaagtgaggaagagtctgcatg
taagtggcctttcttgaatttaggttgtctgttgtggcctctggtgaaac
aaagggccttcttctaaactgggtgatgagatacaatgacaaaaatggag
ggacatttgtaggcatgtgagcagacagtgaaagagtatagaggtagtcc
atgggcagatgggtgttttaaatggagtttttgtagtctttgtggtctct
ggtggagcacaggatttctccagaaattgcaggctgggatagggtgatga
agaaaggatacaggggtagaaggtaggccaggtggggcatgagagagttg
gggtggtctacaggccagaggcctaccttgaactcctggcagctggatgg
cttctggctaggaaggatgtttcactgg

gaattctattcagtaggggtgaaatagctacttcagcaccgttttgattt
ctccatgtttaacgagatatgtaagtgctttctgcagtaatagggcattt
tgttcaatttgtgcagagcagcccatacctttgacaatatcctgagctaa
agggcgcttataggggtcccttttgactaatgactcaactagataaaact
catttctagccttagaggtttcattttatggcataagatgtctagaccct
ataggaggatcaacaatatgaactaatcagtacccacctccagaactgtg
tctctagttgcatatgtagcagaggatggcctagttggccatcaatggga
ggagaggcctttggtcttgtgaagatcatatggcctagtacaggggaata
ccagggccaggatgcaggagagggtaggttagggatcaggcaggggggag
gttatagggcacttttgggatagcatttgaaatgtaaatgaagaaaatac
ctaataaaaaagattttaaaaagtaaccaaataaaaacgaacaaaggttt
aaaaaaaaaaaaggatgtctagttggggtatttttctccacctaatattt
tgtgacatcatatacatttctaatatatgtctctatattttctaaatttt
gaaaaataaaagtaagaaactttcttctgtattaggtttccatattagtc
cttaaatgcaccttagttttagttgtcccattccatatgcttcccttaac
acattcttctatcacttgcccacttaattctctcattttaaccgactgct
caacctgccaggactatatgtttcaattttcctcttcccttagatcctcc
cctcctgccttgttccttactagacaccaaatgtttaaggtaatatggac
tgtaccatgcattttaaggcttgaaaggctagtatacacataataagaaa
aaaataattacttgtcttttttggtctgggttacatcattataataacaa
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27275402_27276279
seq2: B6Ng01-280N01.b_46_923 (reverse)

seq1  CCAGTGAAAACATCCTGCCTAGCCAGAAGACACTCCAGCTGCCAGGAG-T  49
      |||||| ||||||||| |||||||||||| || ||||||||||||||| |
seq2  CCAGTG-AAACATCCTTCCTAGCCAGAAGCCA-TCCAGCTGCCAGGAGTT  48

seq1  CCAGGTAGGCCTCTGGCCTGTAGACCACCCCAACTCTCTCATGCCCCACC  99
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAGGCCTCTGGCCTGTAGACCACCCCAACTCTCTCATGCCCCACC  98

seq1  TGGCCTACCTTCTACCCCTGTATCC-TTCTTCATCACCCTATCCCAGCCT  148
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGGCCTACCTTCTACCCCTGTATCCTTTCTTCATCACCCTATCCCAGCCT  148

seq1  GCAATTTCTGGAGAAATCCTGTGCTCCACCAGAGACCACAAAGACTACAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTCTGGAGAAATCCTGTGCTCCACCAGAGACCACAAAGACTACAA  198

seq1  AAACTCCATTTAAAACACCCATCTGCCCATGGACTACCTCTATACTCTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCATTTAAAACACCCATCTGCCCATGGACTACCTCTATACTCTTT  248

seq1  CACTGTCTGCTCACATGCCTACAAATGTCCCTCCATTTTTGTCATTGTAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCTGCTCACATGCCTACAAATGTCCCTCCATTTTTGTCATTGTAT  298

seq1  CTCATCACCCAGTTTAGAAGAAGGCCCTTTGTTTCACCAGAGGCCACAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCACCCAGTTTAGAAGAAGGCCCTTTGTTTCACCAGAGGCCACAAC  348

seq1  AGACAACCTAAATTCAAGAAAGGCCACTTACATGCAGACTCTTCCTCACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACCTAAATTCAAGAAAGGCCACTTACATGCAGACTCTTCCTCACT  398

seq1  TTACCCCAACTGTCCCTTGCCTTGTCTTTGCCTTGTCCAAGAATGAAACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCAACTGTCCCTTGCCTTGTCTTTGCCTTGTCCAAGAATGAAACT  448

seq1  CAGACAGAGGCACACTATTCATCTAGAGTCCAAGCTGATAATCAGAATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGAGGCACACTATTCATCTAGAGTCCAAGCTGATAATCAGAATTT  498

seq1  CAGTCCCCAAATCTGATGGAGAATATCTGGTCAGCCACAGGCAAGTCTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCCAAATCTGATGGAGAATATCTGGTCAGCCACAGGCAAGTCTGG  548

seq1  TCAGAGATAAGAGAGGAAACAGAAACCAAGAAACAAATCACCCATCCAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGATAAGAGAGGAAACAGAAACCAAGAAACAAATCACCCATCCAAA  598

seq1  AAACACAAACTCAGAAATAGGCACTGACACCTTTAATGAGAACCTAGGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAACTCAGAAATAGGCACTGACACCTTTAATGAGAACCTAGGAG  648

seq1  CCTATTCTCTAGTGTAAGAACACAGTCAACAACAGCTAGAACCCAGTTAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCTCTAGTGTAAGAACACAGTCAACAACAGCTAGAACCCAGTTAG  698

seq1  AACCTACTACAGGAACTTTTGAACATTCCAACAGAGCTAAAAATGAAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACTACAGGAACTTTTGAACATTCCAACAGAGCTAAAAATGAAAAA  748

seq1  AAAATGGATGAAATTAATAAATCCATAAAATAAAACGAAGGGTAAAAACG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGATGAAATTAATAAATCCATAAAATAAAACGAAGGGTAAAAACG  798

seq1  AATAAACAGTTGAAGAAAAGACATAAAACTATTCAAGATCAAACTGGAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAGTTGAAGAAAAGACATAAAACTATTCAAGATCAAACTGGAAA  848

seq1  TACATACAACAAAGAAAACAAAGAGAATTC  878
      ||||||||||||||||||||||||||||||
seq2  TACATACAACAAAGAAAACAAAGAGAATTC  878


seq1: chrX_14280321_14280594
seq2: B6Ng01-280N01.g_328_630 (reverse)

seq1  ------------------------CTTTTTT----------TTTTTAAAC  16
                              | |||||          |||||||| 
seq2  CTTTTTTTTTTTTAAACCTTTGTTCGTTTTTATTTGGTTACTTTTTAAAA  50

seq1  AATGTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCAAA  66
        | ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTATTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCCAAA  100

seq1  AGTCTCCTGTACCCTCCCCTCCCGCCCTGGTGCCCATCCCACCCACTCCA  116
      |||  ||| || ||||||  |||  |||| | || | || |||| |||| 
seq2  AGTGCCCTATAACCTCCC--CCCTGCCTGATCCCTAACCTACCCTCTCCT  148

seq1  GCTTCCTGGCCCTGGCATTCCCCTGTACTGGGGCATATAATCTTTGCAAG  166
      || |||||||||||| ||||||||||||| || ||||| |||||  ||||
seq2  GCATCCTGGCCCTGGTATTCCCCTGTACTAGGCCATATGATCTTCACAAG  198

seq1  ACCAAGGGCCTCTCCTCTCATTGATGGCCAACTAGGCCATCTTCTGCTAC  216
      ||||| ||||||||||| ||||||||||||||||||||||| ||||||||
seq2  ACCAAAGGCCTCTCCTCCCATTGATGGCCAACTAGGCCATCCTCTGCTAC  248

seq1  ATATGCAGCTAGAGCCACGGTCTCTGGGGGGGGGGGTACTGATTAGTTCA  266
      ||||||| |||||| ||| || |||  || || |||||||||||||||||
seq2  ATATGCAACTAGAGACACAGT-TCT--GGAGGTGGGTACTGATTAGTTCA  295

seq1  TATTGTTG  274
      ||||||||
seq2  TATTGTTG  303


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