BAC Information

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BAC

Clone NameB6Ng01-280N09
Chromosome4 (Build37)
Map Location 146,364,581 - 146,527,082
singlet/doubletdoublet
Overlap geneLOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657
Upstream gene1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498
Downstream geneLOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280N09.bB6Ng01-280N09.g
ACCGA080465GA080466
length1,1891,090
definitionB6Ng01-280N09.b B6Ng01-280N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,364,581 - 146,365,778)(146,526,007 - 146,527,082)
sequence
gaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgc
tttaccaaacaatccaatcttagtattcatcagagaattcatacaggaga
gaaaccttacaaatgcagtgaatgtgaaaaatgcttttcccgaaaattcc
atcttggtattcatcagagaattcatacaggagagagaccttacaaatgc
agtgaatgtgaaaaatgcttttcccgaaaattccatcttggtattcatca
gagaattcatacaggaaagaaaccttacaaatagattgtatgtgacaaat
acaatactcacaatgtcagtcttagaaatcatcagttatttcatacagta
gagaatctttataaatgaagtaaatgaggcaattctttaccaagatatat
tatctcaaaattcattagagaatacttagagaagacaaacttttcaaata
tattgtaggtatgaatcctttccttttggcctatttcctagactgtaaca
gtgaatacttacaggctagaaacttaactcatgcattgtatgaagaaata
tctttgacttcatttcaggtcagagagaacatctaagaactttttagggt
aaagtatttctgttggggaaaatggtgtattcttgacaacacttgaggct
ccacactagagaattagtatgattatgaaaatcttgtgaaaatattcatg
caatgttcaaatcttaggtaatgtcaactatttatgctgtgagaaactct
gaaaatgtgaaatgtagaaagcttttcatgacacctttttacttgttcat
cctcaaacgttaccagatgaagacaagttgggaagtcagaagatagtatt
ttataacactttaatcgagaaagagataatccatttcaaaaggaaactat
ttaaggtctttaatacaaccctcaaaataggtaataaaactggtagcatt
ttgtatatttttattgtcctgtaactaactccaataaaactgaagattca
acaaatttgctttgggttgtttccaatttgcagtgggatactcagatgaa
tatatgttgcatctcccaggaatgcctcacaataaaaacatagactgagt
catgaacatttttgcaactgtatcataaagtaatagtggtgatttgactg
gtggatacaatactttcggagttacgaccctgttcacag
gaattcattctgaacatgtagatactattactgaagaaagttgtcatgac
catgatatcagcaaatattcagtgctttttatgtatttcattgaccttat
atttctctcatgtcaaatatttctcttggcatttgacaggtatatgaatg
atctctttcaatgccccagcctgagaaatatagattgacaatggggaaaa
aaagcagatgatcgagtaccatagaaagtgatagaaaatgaatgagaatt
gacaagggaaatattgatttcctaggaacaataaacactaggccagggaa
taatcaagagcagaaacccaggctctcagtgttccttctagcactttctc
aggaataatcaaatgctgcaccaaattcacaaatttcttctgaaaaaccc
cacaaaaaatgtacagataaaacagtgcagaacacagaaagaaggggaat
atggtacagttatcacacaaagctgaccttacctgggtccaaaagcaaat
aaccacgaaaacatgcacacaaaaaataataatagtatgggtgcaccagt
gtaacatttaaaaagtttctctctaatagatgcagaaagtaaactcaact
tgatttcatgccagagactcaaaactgtttcaacaagcacaaaccaaaca
actcaaggcataaactataatcagtgggagaaagctcacaaccatgtcaa
tatatctatgaaaggcctacagcaaaatatcacagtgcatcactatgaaa
gctgtgaagaatgtggaacagaaagaacattactgagtctaatgaggata
atagccaacatcctaagcctatcactgcacaaactgaagacagctgtcat
cattctactctactcagaagacaaacaaaggatgtgcaaagcctccatgc
taattgatcacgatatggcagtgcttacaaagagcaagtaagacttagaa
tatttttcaatgatcaaagaaggatagaggaaagggagttttcttgaatt
acaaaaaagaataattctttaatcagacttgcagtatccaagaaataatc
catctgataaaatactacacgcttatagaatacagaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146364581_146365778
seq2: B6Ng01-280N09.b_46_1234

seq1  GAATTCATACAGGAGAGAGACCTTACAAATGTCGTGAATGTGACAAATGC  50
      |||||||||||||||||| ||||||||||||  |||||||||||||||||
seq2  GAATTCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGC  50

seq1  TTTTCCCGAAAATTCCATCTTGGTATTCATCAGAGAATTCATACAGGAAA  100
      ||| ||  | ||| | ||||| |||||||||||||||||||||||||| |
seq2  TTTACCAAACAATCCAATCTTAGTATTCATCAGAGAATTCATACAGGAGA  100

seq1  GAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTACTACAAAAGGCA  150
      ||||||||||||||| ||||||||||| ||||||||| |   ||||  | 
seq2  GAAACCTTACAAATGCAGTGAATGTGAAAAATGCTTTTCCCGAAAATTCC  150

seq1  ATCTGATAATTCATCAGAGAATTCATACAAGAGAGAAACCTCACAAATGT  200
      ||||    ||||||||||||||||||||| |||||| |||| ||||||| 
seq2  ATCTTGGTATTCATCAGAGAATTCATACAGGAGAGAGACCTTACAAATGC  200

seq1  AGTGAATGTGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCA  250
      ||||||||||| ||||||||| |||  |||| ||||||| ||||||||||
seq2  AGTGAATGTGAAAAATGCTTTTCCCGAAAATTCCATCTTGGTATTCATCA  250

seq1  GAAAATTCATACAGGAGAGAAACCTTACAAATAGATTGTATGTGACAAAT  300
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGAATTCATACAGGAAAGAAACCTTACAAATAGATTGTATGTGACAAAT  300

seq1  ACAATACTCACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTCACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTA  350

seq1  GAGAATCTTTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATAT  400
      ||||||||||||||||||||| || ||| |||| ||||||||||||||||
seq2  GAGAATCTTTATAAATGAAGTAAATGAGGCAATTCTTTACCAAGATATAT  400

seq1  CATCTCAAAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATA  450
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAAAATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATA  450

seq1  TATTGTAGGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAGGTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACA  500

seq1  GTGAATACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATA  550

seq1  TCTTTGACTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACTTCATTTCAGGTCAGAGAGAACATCTAAGAACTTTTTAGGGT  600

seq1  AAAGAATTT-TGTTGGGGAAAATGTTGTATTCTTGACAACACTTGAGGCT  649
      |||| |||| |||||||||||||| |||||||||||||||||||||||||
seq2  AAAGTATTTCTGTTGGGGAAAATGGTGTATTCTTGACAACACTTGAGGCT  650

seq1  CCACACTAGAGAATTAGTATGATTATGAAAATCTTGTGAAAATATTCATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTAGAGAATTAGTATGATTATGAAAATCTTGTGAAAATATTCATG  700

seq1  CAATGTTCAAATCTTAGATAATGTCAACTATTTATGTTGGGAGAAACTCT  749
      ||||||||||||||||| |||||||||||||||||| || ||||||||||
seq2  CAATGTTCAAATCTTAGGTAATGTCAACTATTTATGCTGTGAGAAACTCT  750

seq1  GAAAATGTGAAAATGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCA  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTG-AAATGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCA  799

seq1  CCCTCAAACGTTATAAGATGAAGATAAGTTAGGAAGTCAGAAGATAGTAT  849
       ||||||||||||  ||||||||| ||||| |||||||||||||||||||
seq2  TCCTCAAACGTTACCAGATGAAGACAAGTTGGGAAGTCAGAAGATAGTAT  849

seq1  TGTATAACACTTTCATTGAGACAGAAATAATCCATTTCAAAAGGAAACTA  899
      | ||||||||||| || |||| ||| ||||||||||||||||||||||||
seq2  TTTATAACACTTTAATCGAGAAAGAGATAATCCATTTCAAAAGGAAACTA  899

seq1  TTTAAGGTCTTTAATACAACCCTCAAAATAGGTAATAAAACTGGTAGCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTCTTTAATACAACCCTCAAAATAGGTAATAAAACTGGTAGCAT  949

seq1  TTTGTATATTTTTATTGTCCTGTAACTAACTCCAATAAAACTGAAAGATT  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTGTATATTTTTATTGTCCTGTAACTAACTCCAATAAAACTG-AAGATT  998

seq1  CAACAAATTTGCTTT-GGTTGTTTCCAATTTGCAGTTGGGATACTCAGAT  1048
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  CAACAAATTTGCTTTGGGTTGTTTCCAATTTGCAG-TGGGATACTCAGAT  1047

seq1  GAATATATGTTGCACCTTCCCAGGAAATGCCTCA-AAT-AAAACATAGAC  1096
      |||||||||||||| | ||||||| ||||||||| ||| |||||||||||
seq2  GAATATATGTTGCATC-TCCCAGG-AATGCCTCACAATAAAAACATAGAC  1095

seq1  TGAAGTCATGAACATTTTTGCAAACCTGTATCATAAAGTTAATAGTGGTG  1146
      || ||||||||||||||||||||  ||||||||||||| |||||||||||
seq2  TG-AGTCATGAACATTTTTGCAA--CTGTATCATAAAG-TAATAGTGGTG  1141

seq1  ATTTTTAACTGGTGGATAACAATACCTTTGGGATGTAACGACCCTG-TCA  1195
      |  ||| |||||||||| |||||| |||| ||| || ||||||||| |||
seq2  A--TTTGACTGGTGGAT-ACAATA-CTTTCGGA-GTTACGACCCTGTTCA  1186

seq1  CAG  1198
      |||
seq2  CAG  1189

seq1: chr4_146526007_146527082
seq2: B6Ng01-280N09.g_66_1155 (reverse)

seq1  TTTTTCTTGTATTCTAT-AGCGTGTTAAGTATTTTATCAGATTGGATTAT  49
      |||||| |||||||||| |||||||  |||||||||||||| ||||||||
seq2  TTTTTC-TGTATTCTATAAGCGTGT--AGTATTTTATCAGA-TGGATTAT  46

seq1  TTCTTGGGATACTTGCAAGTCTTGACTTAAAGAATTA-TCTTTTTTGTAA  98
      ||||| |||||| |||||||| ||| ||||||||||| ||||||||||||
seq2  TTCTT-GGATAC-TGCAAGTC-TGA-TTAAAGAATTATTCTTTTTTGTAA  92

seq1  TTCGAGAAAACTTACCTTCCTCATATCCTTATTTGAACATTG-AAAATAT  147
      ||| ||||||||  | |||||| ||||||| ||||| ||||| |||||||
seq2  TTCAAGAAAACTCCCTTTCCTC-TATCCTTCTTTGATCATTGAAAAATAT  141

seq1  TCTAAGTCTTACTTGCTCCTTGTAAGCACTGCTGTACTGTGATAACTTAG  197
      |||||||||||||||||| |||||||||||||  ||  ||||| | ||||
seq2  TCTAAGTCTTACTTGCTCTTTGTAAGCACTGCCATATCGTGATCAATTAG  191

seq1  TTTGGAAGC------------TTGTTTGTCTTCTGAGTAGAGTAGAATGA  235
        |||| ||            |||||||||||||||||||||||||||||
seq2  CATGGAGGCTTTGCACATCCTTTGTTTGTCTTCTGAGTAGAGTAGAATGA  241

seq1  TGACAGCTGTCTTCAGTTTGTGCAGTGATAGGCTTAGGATGTTGGCTA--  283
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TGACAGCTGTCTTCAGTTTGTGCAGTGATAGGCTTAGGATGTTGGCTATT  291

seq1  ----ACATTAGACTCAGTAATGTTCTTTCTGTTCCACATTCTTCACAGCT  329
           |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATTAGACTCAGTAATGTTCTTTCTGTTCCACATTCTTCACAGCT  341

seq1  TTCATAGTGATGCACTGTGGTATTTTGCTGTAGGCCTTTCATAGATATAT  379
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCATAGTGATGCACTGTGATATTTTGCTGTAGGCCTTTCATAGATATAT  391

seq1  TGACATGGTTGTGAGCTTTCTCCCACTGATTATAGTTTATGCCTTGAGTT  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGGTTGTGAGCTTTCTCCCACTGATTATAGTTTATGCCTTGAGTT  441

seq1  GTTTGGTTTGTGCTTGTTGAAACAGTTTTGAGTCTCTGGCATGAAATCAA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTTGTGCTTGTTGAAACAGTTTTGAGTCTCTGGCATGAAATCAA  491

seq1  GTTGAGTTTACTTTCTGCATC-ATTAGAGAGAAACTTTTTAAATGTTGCA  528
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  GTTGAGTTTACTTTCTGCATCTATTAGAGAGAAACTTTTTAAATGTTACA  541

seq1  CTGGTGCACCCATACTATTATTATTTTTTGTGTGAATGTTTTCGTGGTTA  578
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGGTGCACCCATACTATTATTATTTTTTGTGTGCATGTTTTCGTGGTTA  591

seq1  TTTGCTTTTGGACCCAGGTAAGGTCAGCTTTGTGTGATAACTGTACCATA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTGGACCCAGGTAAGGTCAGCTTTGTGTGATAACTGTACCATA  641

seq1  TTCCCCTTCTTTCTGTGTTCTGCACTGTTTTATCTGTAAATTTTTTGTGG  678
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTCCCCTTCTTTCTGTGTTCTGCACTGTTTTATCTGTACATTTTTTGTGG  691

seq1  GATTTTTCAGAAGAAATTTGTGAATTTGGTGCAGCATTTGATTATTCCTG  728
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCAGAAGAAATTTGTGAATTTGGTGCAGCATTTGATTATTCCTG  741

seq1  AGAAAGTGCTAGAAGGAACACTGAGAGCCTGGGTTTCTGCTCTTGATTAT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGCTAGAAGGAACACTGAGAGCCTGGGTTTCTGCTCTTGATTAT  791

seq1  TCCCTGGCCTAGTGTTTATTGTTCCTAGGAAATCAATATTTCCCTTGTCA  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGCCTAGTGTTTATTGTTCCTAGGAAATCAATATTTCCCTTGTCA  841

seq1  ATTCTGTTTCATTTTCTATCACTTTCTATGGTACTCGATCATTTGCTTTT  878
      |||||  ||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTCTCATTCATTTTCTATCACTTTCTATGGTACTCGATCATCTGCTTTT  891

seq1  TTT-CCCATTGTCAATCTATACTTCTCAGGCTGGGGCATTGGAAGATATC  927
      ||| ||||||||||||||||| ||||||||||||||||||| |||| |||
seq2  TTTCCCCATTGTCAATCTATATTTCTCAGGCTGGGGCATTGAAAGAGATC  941

seq1  ATTCATATACCTGTCAAATGCCAAGAGAAATATTTGACATGAGATTAATA  977
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  ATTCATATACCTGTCAAATGCCAAGAGAAATATTTGACATGAGAGAAATA  991

seq1  TAAGGTCAATGAAATACATAAAAAGCACTGAATATTTGCTGATATCATGG  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCAATGAAATACATAAAAAGCACTGAATATTTGCTGATATCATGG  1041

seq1  TCATGACAACTTTCTTCAGTAATAGTATCTACATGTTCAGAATGAATTC  1076
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACAACTTTCTTCAGTAATAGTATCTACATGTTCAGAATGAATTC  1090