BAC Information

Click to search

BAC

Clone NameB6Ng01-281A12
Chromosome4 (Build37)
Map Location 76,319,824 - 76,447,690
singlet/doubletdoublet
Overlap geneLOC667858
Upstream geneLOC100039884, LOC667845, Ptprd
Downstream geneLOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281A12.bB6Ng01-281A12.g
ACCGA080613GA080614
length1,0381,082
definitionB6Ng01-281A12.b B6Ng01-281A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,319,824 - 76,320,858)(76,446,609 - 76,447,690)
sequence
gaattcctaagactcagggatttttaaactcatactatttatattgacat
ccaattattttcttatgtttataatcacttaaagttattagattatgtaa
ttatttattctttgtgaatattgtttccaataaatatagccatctacctt
gaaagaaggtttactttgttaatttttattataacttattttttagaaaa
atcaaacagaaaaatatgcttagaattatagaatgttgatgaccggatta
tataatttgaacaaattggcaatcaaaataaaagggtaacaagaacagaa
ggtatggatcatcaataagagtaaaaaatagaattggccaaatcaataat
aaacttatggaaataataaagtatccatgagaaaaatgcctgagcttcag
taggcaaaaattaattgctgggtaaaagaatctgaaaggttagataggta
tttacttcttatttttaagtagacagaatattaattacagacagatgatg
ctcttgagtgaacagaaggattttgttttcagctctgtgaaacacctgca
cagataagattaccatccgcacctcccatgaagtcaaggaagggtatgga
aggcaacactagagatattctcgatgcataatgaggcagcagggcaaggt
gtgatgaaaaaaaaccaaagtgccttctcaagattgccatgactgacatt
tataacacaggcagagcatcctatgagttatcttccacagcacctgattt
aaaaaaaaaagaagaagaaaaacttctaaagcaataaaaccatgtcatta
tccacaagcaactttgaaagctgcaaaattaaaacatggcaatcttgtca
catataatttcatcctcattgaattattcctaataataatgattagccca
tatgtattttaaatgggaatttttttttacttgaagatttgaaacgggaa
aaaatatcccataattatacattagtacatacagaagtttcatttcaaac
tttatttattattattaatatatattatatattattat

gaattcctgggtttatgtaccaggctcctcagtcttgcctgtgccgttat
acatttggcagatacggaattttgggttttctcacttaaaagctttccat
agaggaagtcatttctctacctgtgattatcagacctgttcatatcaaaa
agacagcatttgatcttccttgtcaaaacaagattggagtattttgtatt
gctgctgaagagaggtgcaggacaaaatatcaggatgagattttaaacta
atggctgctcctcttgtcttagcattgaaacatcttctaaaaaatgaagc
atgccatgaaaaaagaagttaaagtaagtatcatgaaatgctcaaggcct
atctatacctgaatctatggagagcagagatatgatcagaaaaatagggt
gtaggagaagtgaagctaaaacctgacagaaacttgaacctgtgaggaga
acgttgggcaggcactcaggtgagaaaatgaagcagataatctcccaaaa
atatttaattgctttctttcttcctttcttccttccttccttcctttctt
tctttctttctttctttctttctttctttctttctttctttctttctttc
tctttcttttttctttcttctttctttctttctctttcttacttcctctc
tctctttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttcttcttcttcttcttcttcttctttcttgtagtaagcaacat
ttgttaagttcttgtgtgttccaggcctgcaattaggcaattcctaaatg
tacaatttacaatccgcatgtgtgttccatttcctgacctcagagtactc
aacagtggacagacctaacatttccagagtagcaaaatgacacattggaa
tttaaaactttgttagtattcagagagagattttcttactcaagagattc
agaatttctgcatcaattctacaagaacagaaagggtcttgagagttttc
aggagaagatgctttataaaggaaaagaacctgagcttcattaaataata
aaggagggagggcacaccctcaagtttatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_76319824_76320858
seq2: B6Ng01-281A12.b_47_1084

seq1  GAATTCCTAAGACTCAGGGATTTTTAAACTCATACTATTTATATTGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGACTCAGGGATTTTTAAACTCATACTATTTATATTGACAT  50

seq1  CCAATTATTTTCTTATGTTTATAATCACTTAAAGTTATTAGATTATGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTATTTTCTTATGTTTATAATCACTTAAAGTTATTAGATTATGTAA  100

seq1  TTATTTATTCTTTGTGAATATTGTTTCCAATAAATATAGCCATCTACCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTCTTTGTGAATATTGTTTCCAATAAATATAGCCATCTACCTT  150

seq1  GAAAGAAGGTTTACTTTGTTAATTTTTATTATAACTTATTTTTTAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGGTTTACTTTGTTAATTTTTATTATAACTTATTTTTTAGAAAA  200

seq1  ATCAAACAGAAAAATATGCTTAGAATTATAGAATGTTGATGACCGGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACAGAAAAATATGCTTAGAATTATAGAATGTTGATGACCGGATTA  250

seq1  TATAATTTGAACAAATTGGCAATCAAAATAAAAGGGTAACAAGAACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTGAACAAATTGGCAATCAAAATAAAAGGGTAACAAGAACAGAA  300

seq1  GGTATGGATCATCAATAAGAGTAAAAAATAGAATTGGCCAAATCAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGATCATCAATAAGAGTAAAAAATAGAATTGGCCAAATCAATAAT  350

seq1  AAACTTATGGAAATAATAAAGTATCCATGAGAAAAATGCCTGAGCTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTATGGAAATAATAAAGTATCCATGAGAAAAATGCCTGAGCTTCAG  400

seq1  TAGGCAAAAATTAATTGCTGGGTAAAAGAATCTGAAAGGTTAGATAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAAAATTAATTGCTGGGTAAAAGAATCTGAAAGGTTAGATAGGTA  450

seq1  TTTACTTCTTATTTTTAAGTAGACAGAATATTAATTACAGACAGATGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCTTATTTTTAAGTAGACAGAATATTAATTACAGACAGATGATG  500

seq1  CTCTTGAGTGAACAGAAGGATTTTGTTTTCAGCTCTGTGAAACACCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGTGAACAGAAGGATTTTGTTTTCAGCTCTGTGAAACACCTGCA  550

seq1  CAGATAAGATTACCATCCGCACCTCCCATGAAGTCAAGGAAGGGTATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAGATTACCATCCGCACCTCCCATGAAGTCAAGGAAGGGTATGGA  600

seq1  AGGCAACACTAGAGATATTCTCGATGCATAATGAGGCAGCAGGGCAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACACTAGAGATATTCTCGATGCATAATGAGGCAGCAGGGCAAGGT  650

seq1  GTGATGAAAAAAAACCAAAGTGCCTTCTCAAGATTGCCATGACTGACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAAAAAAACCAAAGTGCCTTCTCAAGATTGCCATGACTGACATT  700

seq1  TATAACACAGGCAGAGCATCCTATGAGTTATCTTCCACAGCACCTGATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACACAGGCAGAGCATCCTATGAGTTATCTTCCACAGCACCTGATTT  750

seq1  AAAAAAAAAAGAAGAAGAAAAACTTCTAAAGCAATAAAACCATGTCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGAAGAAGAAAAACTTCTAAAGCAATAAAACCATGTCATTA  800

seq1  TCCACAAGCAACTTTGAAAGCTGCAAAATTAAAACATGGCAATCTTGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAGCAACTTTGAAAGCTGCAAAATTAAAACATGGCAATCTTGTCA  850

seq1  CATATAATTTCATCCTCATTGAATTATTCCTAATAATAATGATTAGCCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATTTCATCCTCATTGAATTATTCCTAATAATAATGATTAGCCCA  900

seq1  TATGTATTTTAAATGGGAA-TTTTTTTTACTTGAAGATTTGAAACGGGAA  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATGTATTTTAAATGGGAATTTTTTTTTACTTGAAGATTTGAAACGGGAA  950

seq1  AAAATATTCCATAATTATACATTAGTACATACAGAAAGTTTCATTTCAAA  999
      ||||||| |||||||||||||||||||||||||| |||||||||||||||
seq2  AAAATATCCCATAATTATACATTAGTACATACAG-AAGTTTCATTTCAAA  999

seq1  CTTTTATTTATTATTATTAAT---TATTAT-TATTATTAT  1035
      | |||||||||||||||||||   |||||| |||||||||
seq2  C-TTTATTTATTATTATTAATATATATTATATATTATTAT  1038


seq1: chr4_76446609_76447690
seq2: B6Ng01-281A12.g_68_1149 (reverse)

seq1  AATATAAACTTGA--GTGTGCCCT-CCTCCTTTATTATTTAATGAAGCCT  47
      |||||||||||||  ||||||||| |||||||||||||||||||||| ||
seq2  AATATAAACTTGAGGGTGTGCCCTCCCTCCTTTATTATTTAATGAAG-CT  49

seq1  CA-GTTCTTTTTCTTTAT-AAGCATCTTCCTCCCTGAAAACTTCTCAAGA  95
      || |||||||| |||||| ||||||||||   ||||||||| ||||||||
seq2  CAGGTTCTTTTCCTTTATAAAGCATCTTC--TCCTGAAAAC-TCTCAAGA  96

seq1  CCCTTTCTG-TCTTGTAGAATTGATGCAGAAATTCTGAATCTCTTGAGTA  144
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTGTTCTTGTAGAATTGATGCAGAAATTCTGAATCTCTTGAGTA  146

seq1  AGAAAATCTCTTCTTCTGAATTACTAACAAAGTTTT-AATTCCAATGTGT  193
      |||||||||||   |||||| ||||||||||||||| |||||||||||||
seq2  AGAAAATCTCT--CTCTGAA-TACTAACAAAGTTTTAAATTCCAATGTGT  193

seq1  CATTTTGCTACTCTGGAAATGTTAGGTCTGTCCACTGTTGAGTACTCTGA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGCTACTCTGGAAATGTTAGGTCTGTCCACTGTTGAGTACTCTGA  243

seq1  GGTCAGGAAATGGAACACACATGCGGATTGTAAATTGTACATTTAGGAAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGGAAATGGAACACACATGCGGATTGTAAATTGTACATTTAGGAAT  293

seq1  TGCCTAATTGCAGGCCTGGAACACACAAGAACTTAACAAATGTTGCTTAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAATTGCAGGCCTGGAACACACAAGAACTTAACAAATGTTGCTTAC  343

seq1  TACAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  393

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAGAGAGAGGAAGTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAGAGAGAGGAAGTA  443

seq1  AGAAAGAGAAAGAAAGAAAGAAGAAAGAAAAAAGAAAGAGAAAGAAAGAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAAAGAAAGAAAGAAGAAAGAAAAAAGAAAGAGAAAGAAAGAA  493

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAG  543

seq1  GAAGGAAGGAAGAAAGGAAGAAAGAAAGCAATTAAATATTTTTGGGAGAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAGAAAGGAAGAAAGAAAGCAATTAAATATTTTTGGGAGAT  593

seq1  TATCTGCTTCATTTTCTCACCTGAGTGCCTGCCCAACGTTCTCCTCACAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTTCATTTTCTCACCTGAGTGCCTGCCCAACGTTCTCCTCACAG  643

seq1  GTTCAAGTTTCTGTCAGGTTTTAGCTTCACTTCTCCTACACCCTATTTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGTTTCTGTCAGGTTTTAGCTTCACTTCTCCTACACCCTATTTTT  693

seq1  CTGATCATATCTCTGCTCTCCATAGATTCAGGTATAGATAGGCCTTGAGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCATATCTCTGCTCTCCATAGATTCAGGTATAGATAGGCCTTGAGC  743

seq1  ATTTCATGATACTTACTTTAACTTCTTTTTTCATGGCATGCTTCATTTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGATACTTACTTTAACTTCTTTTTTCATGGCATGCTTCATTTTT  793

seq1  TAGAAGATGTTTCAATGCTAAGACAAGAGGAGCAGCCATTAGTTTAAAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATGTTTCAATGCTAAGACAAGAGGAGCAGCCATTAGTTTAAAAT  843

seq1  CTCATCCTGATATTTTGTCCTGCACCTCTCTTCAGCAGCAATACAAAATA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCTGATATTTTGTCCTGCACCTCTCTTCAGCAGCAATACAAAATA  893

seq1  CTCCAATCTTGTTTTGACAAGGAAGATCAAATGCTGTCTTTTTGATATGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATCTTGTTTTGACAAGGAAGATCAAATGCTGTCTTTTTGATATGA  943

seq1  ACAGGTCTGATAATCACAGGTAGAGAAATGACTTCCTCTATGGAAAGCTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCTGATAATCACAGGTAGAGAAATGACTTCCTCTATGGAAAGCTT  993

seq1  TTAAGTGAGAAAACCCAAAATTCCGTATCTGCCAAATGTATAACGGCACA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGAGAAAACCCAAAATTCCGTATCTGCCAAATGTATAACGGCACA  1043

seq1  GGCAAGACTGAGGAGCCTGGTACATAAACCCAGGAATTC  1082
      |||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGACTGAGGAGCCTGGTACATAAACCCAGGAATTC  1082


| Home | SequenceCutter | Blast | Download |