BAC Information

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BAC

Clone NameB6Ng01-281B24
Chromosome4 (Build37)
Map Location 146,553,934 - 146,800,072
singlet/doubletdoublet
Overlap geneOTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701
Upstream geneLOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570
Downstream geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281B24.bB6Ng01-281B24.g
ACCGA080680GA080681
length6081,164
definitionB6Ng01-281B24.b B6Ng01-281B24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,799,478 - 146,800,072)(146,553,934 - 146,555,052)
sequence
gaattccacatccttaaacgttgtccctatcggattctcaccaccactgc
catcttccacactgtccagcatgccttttgtctcagatctcagtaactca
gtacacagatgaccttcccaacactcttccctgcttctgcaaagttctcc
caggtaatgtcttgggggttgccaccccaatttctctccctttccagtca
ccattagtaacccaattcttcctcgagacccctcaagaagctgcacacca
ctccctcactgtgctgcatcctgtgtggtcttctttagttctcatgttcc
cacgcctgctgaaagtccacaatcttttgttgtattcacacctctgagag
cacctaaactccctcttttacctaggcagactctagacaaaacccactaa
ctctaacttctctctctcttttttttttccatcctgcatgaaactgggga
aaacatataagaataatgactcatctgattttaaattcaggatcaagaat
tctgatttctcactggtatccagctgatactgtatggcggctagcctcag
ccttttgcagtctctctctctttctgtctctctctctctgtggggggagg
gaggggga
gaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaatgc
tttactgaataaggccatcagagaatttatacaggagagataccttacaa
atagtttgtatgtgacaaatacaatacaatgtcagtctgagaaatcatca
gtttttaatacagtagagaatatttataaatgaagtgaacgagacaatcc
tttaccaagatatatcatcttaaaaatcattagagaatacttacagaaga
gaaacttttcaattatattgaaggtatgaatcctttactcttggcctatt
tcctagaatgttaacagtgaatacttacaggatacaaacttaactcatgc
attgtatgaagaaatatctttgacttcatttcaggtcaaagagaatatct
aataactttttaggggaaagtatttctgttggggaaagtgtggcctgtgt
tttattcacgttctattcttgacaattgaggctccacactagagaattag
tatgattatgaaaatcatgtgaaaactttcatgcaatgttcaaatcttaa
ataatgtcaactattttttgcttgaagaaactctgaaaatgtaaaaatgt
agaaagcttttcatgacacctttttacctgttcacccttaaatgttacaa
gatgaagacaagttgggaagtgaggagatattattgtgtaccacattcat
tgagacagaataatccatttcaaaaggaaactatttaaggtttttaatgc
agtcctcaaaatatctaataaaactggtaacattctgtatatttaattca
aatgagccaattgagaaaattatacttaaaagaatatctggcaaactgag
ccacccagacagcatattctttatcctataaatatgcttacagatgttaa
gtgtgcttcgagtattcagtaataataattcttctcaatgcttgggttca
cattataggataacaactgatcattatttcccatttattgaacgaaagtc
ctataggtctctgaaaaatgctgaccgttgatacatatttaacaaggaca
ttgtggtgtactccaccttctaccgttaggaataaaataagattccattt
cttttcctaatcatcttacgggaaatcttaatattttgcacatcttcaga
atatacagttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146799478_146800072
seq2: B6Ng01-281B24.b_46_653 (reverse)

seq1  TCCCCCTCCCTCCCCCCCCAGAGAGAGAGAG------AGAGAGAGAGACT  44
      ||||||||||||||||| |||||||||||||      |||||||||||||
seq2  TCCCCCTCCCTCCCCCCACAGAGAGAGAGAGACAGAAAGAGAGAGAGACT  50

seq1  GCAAAAGGCTGAGGCTAGCCACCATACAGTATCAGCTGGATACCAATGAG  94
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  GCAAAAGGCTGAGGCTAGCCGCCATACAGTATCAGCTGGATACCAGTGAG  100

seq1  ACATCAGAATTCTTGACCCTGAATTTAAAATCAGATGAGTCATTATT-TT  143
      | |||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  AAATCAGAATTCTTGATCCTGAATTTAAAATCAGATGAGTCATTATTCTT  150

seq1  TTATGTTTTCCCCAGTTTCATGCAGGATGGAAAAAAA------ATAGAGA  187
       ||||||||||||||||||||||||||||||||||||      | |||||
seq2  ATATGTTTTCCCCAGTTTCATGCAGGATGGAAAAAAAAAAGAGAGAGAGA  200

seq1  AGTTAGAGTTAGTGGGTTTTGTCTAGAGTCTGCCTAGGTAAAAGAGGGAG  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAGTTAGTGGGTTTTGTCTAGAGTCTGCCTAGGTAAAAGAGGGAG  250

seq1  TTTAGGTGCTCTCAGAGGTGTGAATACAACAAAAGATTGTGGACTTTCAG  287
      ||||||||||||||||||||||||||||||||||||||||||||||    
seq2  TTTAGGTGCTCTCAGAGGTGTGAATACAACAAAAGATTGTGGACTTNNNN  300

seq1  CAGGCGTGGGAACATGAGAACTAAAGAAGACCACATAGGATGCAGCACAG  337
                    ||||||||||||||||||||| ||||||||||||||
seq2  NNNNNNNNNNNNNNTGAGAACTAAAGAAGACCACACAGGATGCAGCACAG  350

seq1  TGAGGGAGTGGTGTGCAGCTTCTTGAGGGGTCTCGAGGAAGAATTGGGTT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGTGGTGTGCAGCTTCTTGAGGGGTCTCGAGGAAGAATTGGGTT  400

seq1  ACTAATGGTGACTTGAAAGGGAGAGAAATTGGGGTGGCAACCCCCAAGAC  437
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACTAATGGTGACTGGAAAGGGAGAGAAATTGGGGTGGCAACCCCCAAGAC  450

seq1  ATTACCTGGGAGAACTTTGCAGAAGCAGGGAAGAGTGTTGGGAAGGTCAT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTGGGAGAACTTTGCAGAAGCAGGGAAGAGTGTTGGGAAGGTCAT  500

seq1  CTGTGTACTGAGTTACTGAGATCTGAGACAAAAGGCATGCTGGACAGTGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTACTGAGTTACTGAGATCTGAGACAAAAGGCATGCTGGACAGTGT  550

seq1  CAAAGATGGCAGTGGTGGTGAGACTCCGATAGTGACAACGTTTAAGGATG  587
        ||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  GGAAGATGGCAGTGGTGGTGAGAATCCGATAGGGACAACGTTTAAGGATG  600

seq1  TGGAATTC  595
      ||||||||
seq2  TGGAATTC  608

seq1: chr4_146553934_146555052
seq2: B6Ng01-281B24.g_105_1229

seq1  GTGACAAATGCTTTACTGAAAAAGGCCATCAGAGAATTCATACAGGAGAG  50
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  GTGACAAATGCTTTACTGAATAAGGCCATCAGAGAATTTATACAGGAGAG  50

seq1  ATAGCTTACAAATAGTTTGTATGTGACAAATACAATACAATGTCAGTCTG  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTACAAATAGTTTGTATGTGACAAATACAATACAATGTCAGTCTG  100

seq1  AGAAATCATCAGTTTTTAATACAGTAGAGAATATTTATAAATGAAGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCATCAGTTTTTAATACAGTAGAGAATATTTATAAATGAAGTGAA  150

seq1  TGAGACAATCCTTTACCAAGATATATCATCTTAAAAATCATTAGAGAATA  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAATCCTTTACCAAGATATATCATCTTAAAAATCATTAGAGAATA  200

seq1  CTTACAGAAGAGAAACTTTTCAATTATATCGAAGGTATGAATCCTTTACT  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTACAGAAGAGAAACTTTTCAATTATATTGAAGGTATGAATCCTTTACT  250

seq1  CTTGGCCTATTTCCTAGAATGTTAACAGTGAATACTTACAGGATACAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCTATTTCCTAGAATGTTAACAGTGAATACTTACAGGATACAAAC  300

seq1  TTAACTCATGCATTGTATGAAGAAATATCTTTGACTTCATTTCAGGTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCATGCATTGTATGAAGAAATATCTTTGACTTCATTTCAGGTCAA  350

seq1  AGAGAATATCTAATAACTTTTTA-GGCAAAGTATTTCTGTTGGGGAAAGT  399
      ||||||||||||||||||||||| || |||||||||||||||||||||||
seq2  AGAGAATATCTAATAACTTTTTAGGGGAAAGTATTTCTGTTGGGGAAAGT  400

seq1  GTGGCCTGTGTTTTATTCACGTTCTATTCTTGACAACAATTGAGGCTCCA  449
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  GTGGCCTGTGTTTTATTCACGTTCTATTCTTG---ACAATTGAGGCTCCA  447

seq1  CACTAGAGAATTAGTATGATTATGAAAATCATGTGAAAACTTTCATGCAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAGAATTAGTATGATTATGAAAATCATGTGAAAACTTTCATGCAA  497

seq1  TGTTCAAATCTTAAATAATGTCAACTATTTTTTGCTTGAAGAAACTCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAATCTTAAATAATGTCAACTATTTTTTGCTTGAAGAAACTCTGA  547

seq1  AAATGTAAAAATGTAGAAAGCTTTTCATGACACCTTTTTACTTGTTCACC  599
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAATGTAAAAATGTAGAAAGCTTTTCATGACACCTTTTTACCTGTTCACC  597

seq1  CTTAAATGTTACAAGATGAAGACAAGTTGGGAAGTGAGGAGATATTATTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGTTACAAGATGAAGACAAGTTGGGAAGTGAGGAGATATTATTG  647

seq1  TGTAACACATTCATTGAGACAGAAATAATCCATTTCAAAAGGAAACTATT  699
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTACCACATTCATTGAGACAG-AATAATCCATTTCAAAAGGAAACTATT  696

seq1  TAAGGTCTTTAATGCAGTCCTAAAAATATCTAATAAAACTGGTAACATTC  749
      |||||| |||||||||||||| ||||||||||||||||||||||||||||
seq2  TAAGGTTTTTAATGCAGTCCTCAAAATATCTAATAAAACTGGTAACATTC  746

seq1  TGTGTATTTAATTCAAATGAGCCAATTGAGAAAAATTATACTTAAAAGAA  799
      ||| |||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTATATTTAATTCAAATGAGCCAATTGAG-AAAATTATACTTAAAAGAA  795

seq1  TATCTGGCAAACTGAGCCACCCAGACAGCATATTCTTTATCCTATAAATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGCAAACTGAGCCACCCAGACAGCATATTCTTTATCCTATAAATA  845

seq1  TGCTTACAGATGTTACGTGTGCTTCGAGTATTCAGTAATAATAATTCTTC  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGCTTACAGATGTTAAGTGTGCTTCGAGTATTCAGTAATAATAATTCTTC  895

seq1  TCAAATGCTT-GGTTCACATTATAGGATAACAACTGATCATTATTTCCCA  948
      || ||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TC-AATGCTTGGGTTCACATTATAGGATAACAACTGATCATTATTTCCCA  944

seq1  TTTATTGAACGAAAGTCCTATAGGTCTCTGAAAAATGCTGACCGTTGATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAACGAAAGTCCTATAGGTCTCTGAAAAATGCTGACCGTTGATA  994

seq1  CATATT--ACAA-GACATTGTGGTGTACTCCAC--TCTACCGTAAGGAAT  1043
      ||||||  |||| ||||||||||||||||||||  |||||||| ||||||
seq2  CATATTTAACAAGGACATTGTGGTGTACTCCACCTTCTACCGTTAGGAAT  1044

seq1  AAAAT-AGATTTCCATTCTTTTCTTAAATCATC-TACGG--AATCTTAAT  1089
      ||||| ||||| |  |||||||| | ||||||| |||||  |||||||||
seq2  AAAATAAGATTCCATTTCTTTTCCT-AATCATCTTACGGGAAATCTTAAT  1093

seq1  ATTTTGCACATC-TCAGAATATACA-TTCTGA  1119
      |||||||||||| |||||||||||| ||||||
seq2  ATTTTGCACATCTTCAGAATATACAGTTCTGA  1125