BAC Information

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BAC

Clone NameB6Ng01-281E07
Chromosome4 (Build37)
Map Location 144,329,072 - 144,465,621
singlet/doubletdoublet
Overlap geneGm438, LOC666242, LOC676844
Upstream geneOTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849
Downstream geneDhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281E07.bB6Ng01-281E07.g
ACCGA080790GA080791
length1,1201,071
definitionB6Ng01-281E07.b B6Ng01-281E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,329,072 - 144,330,193)(144,464,554 - 144,465,621)
sequence
gaattctcagatgaaaagcacaaatagacagggtagttttttaatactaa
aaatctttatccaccataaaatgccatttcatttttaaatgtatttatgt
ctatgagtctgcatgtatgtttgtgcagcatacacatgactgattgtgaa
aagagcactgtatcctctagaaatggagttagtaaaaattgtgagccttc
atttaggttctatgactgtgggtcctctgaaagagcatccaatgcttgta
agtactgacccaattctccagtcacatgaaatgcaattctatatcatctc
agtgagaatggatgcaatcaagaaaacaacaaatgcttgtgaagaagtag
aaacatgggattcttatcgtctgttgttgtgagagtgtgctggctgttct
tgagtctacttaacccacaaatgtgttatctgaggggaggaaacctcagt
aaagatgatgccaccataatatccagctgtaaattctcttcttaattagt
gattgatgtgagagggcccagttctttgtgggtggactatccctggagtg
gttctgggttctgtaagaaagtaggatgaaaaggccagggaaacaatcta
gaaagtagcatccctccatgacctctgcatgagatcctgcttccaggttt
ctgccacgtttgaattactatccaggcttctcttaataatagactacaat
gtggaagtataagtctaataaactctctccttcccaacttgcttttttat
catgatgtttcatcacggcaatagaaaccctaagacagggaataaagtgg
tgcagatttctccaaaaacagaagaaagaactatttcattcaaccaaagg
actttacattctaccacagaggtatgtgaactcccacattcattgctgct
ccattctcaatttctaaggaatggaatcagcttagatggtcatcaattaa
taaatgtatgatggtggcaaaatacatacataagcacacacaattttgtt
cagaccagcaacgtgaccaataccagggcaggttagcatacagaagccac
ctcttgagctcttacaagactttctgctagaacatctgcccaactcctga
gcatcctgaacctctgagac
gaattcttggctcttgatagtgaccccaagggatctgctcccaaggctgg
ggtagttgggaggatttacactgcagcatacagggcctggcctagcccac
agaatgggttggaatggggcagggggttccggcagatgcatcaccatagc
ctggtgataccagggcattcttatagggcatgagcctcaccatatcttcc
ccagatactttgggccaagcacaacaagttattgggaaatgctgtcttcc
tcctcctctctcctgcctctcccaagatattgcaagatggagatttactg
catggctggggtgtaattacatggtgattgaggctgagagctgactgttg
attgagaatggactctctggtacaactgttcctgcaagggtgtgtgtgtg
tgtctgagtgaatgtttccaggttctttgcctatcacttaaagaactgaa
aatgagggctacataaatttgcaaagggatagaaatttattagaaatgaa
gggttaatatggattagagagaatatatcatcaagatttacagctggtca
caagcgagagaatattctagagttttagtctatggcctaggatgtctttc
ttatagggtctaaaggaaggaggggctggctacagtggagagtggcttga
ggggttctgtattttgattgatagattatgccatgtgcccattcttccta
cagaactcatcctttcccataatgcatctgattttaattatatgcatgcc
caagtatgcataggcctaagattaaataaataggggattctctctgaaag
ttcacttgaaggactcagtttgccttttcgtacatgtgcctggcattggg
tcatgctggctgccccttttattcttcatataggacatattgggaatatt
ctcgactagaaactgtctaaatgagactgtttcttagagtggagaaattt
atagtactgttaagagattcaagtatgcctgatatacataggaagttcag
ggttctcagtttgctaagcacaatttgtttggaagaggatatgagcatcg
attgggttaggtggaaggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144329072_144330193
seq2: B6Ng01-281E07.b_48_1167

seq1  GAATTCTCAGATGAAAAGCACAAATAGACAGGGTAGTTTTTTAATACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGATGAAAAGCACAAATAGACAGGGTAGTTTTTTAATACTAA  50

seq1  AAATCTTTATCCACCATAAAATGCCATTTCATTTTTAAATGTATTTATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTATCCACCATAAAATGCCATTTCATTTTTAAATGTATTTATGT  100

seq1  CTATGAGTCTGCATGTATGTTTGTGCAGCATACACATGACTGATTGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGTCTGCATGTATGTTTGTGCAGCATACACATGACTGATTGTGAA  150

seq1  AAGAGCACTGTATCCTCTAGAAATGGAGTTAGTAAAAATTGTGAGCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACTGTATCCTCTAGAAATGGAGTTAGTAAAAATTGTGAGCCTTC  200

seq1  ATTTAGGTTCTATGACTGTGGGTCCTCTGAAAGAGCATCCAATGCTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGTTCTATGACTGTGGGTCCTCTGAAAGAGCATCCAATGCTTGTA  250

seq1  AGTACTGACCCAATTCTCCAGTCACATGAAATGCAATTCTATATCATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGACCCAATTCTCCAGTCACATGAAATGCAATTCTATATCATCTC  300

seq1  AGTGAGAATGGATGCAATCAAGAAAACAACAAATGCTTGTGAAGAAGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAATGGATGCAATCAAGAAAACAACAAATGCTTGTGAAGAAGTAG  350

seq1  AAACATGGGATTCTTATCGTCTGTTGTTGTGAGAGTGTGCTGGCTGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGGATTCTTATCGTCTGTTGTTGTGAGAGTGTGCTGGCTGTTCT  400

seq1  TGAGTCTACTTAACCCACAAATGTGTTATCTGAGGGGAGGAAACCTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTACTTAACCCACAAATGTGTTATCTGAGGGGAGGAAACCTCAGT  450

seq1  AAAGATGATGCCACCATAATATCCAGCTGTAAATTCTCTTCTTAATTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGATGCCACCATAATATCCAGCTGTAAATTCTCTTCTTAATTAGT  500

seq1  GATTGATGTGAGAGGGCCCAGTTCTTTGTGGGTGGACTATCCCTGGAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATGTGAGAGGGCCCAGTTCTTTGTGGGTGGACTATCCCTGGAGTG  550

seq1  GTTCTGGGTTCTGTAAGAAAGTAGGATGAAAAGGCCAGGGAAACAATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGTTCTGTAAGAAAGTAGGATGAAAAGGCCAGGGAAACAATCTA  600

seq1  GAAAGTAGCATCCCTCCATGACCTCTGCATGAGATCCTGCTTCCAGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAGCATCCCTCCATGACCTCTGCATGAGATCCTGCTTCCAGGTTT  650

seq1  CTGCCACGTTTGAATTACTATCCAGGCTTCTCTTAATAATAGACTACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACGTTTGAATTACTATCCAGGCTTCTCTTAATAATAGACTACAAT  700

seq1  GTGGAAGTATAAGTCTAATAAACTCTCTCCTTCCCAACTTGCTTTTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGTATAAGTCTAATAAACTCTCTCCTTCCCAACTTGCTTTTTTAT  750

seq1  CATGATGTTTCATCACGGCAATAGAAACCCTAAGACAGGGAATAAAGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTTTCATCACGGCAATAGAAACCCTAAGACAGGGAATAAAGTGG  800

seq1  TGCAGATTTCTCCAAAAACAGAAGAAAGAACTATTTCATTCAACCAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATTTCTCCAAAAACAGAAGAAAGAACTATTTCATTCAACCAAAGG  850

seq1  ACTTTACATTCTACCACAGAGGTATGTGAACTCCCACATTCATTGCTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACATTCTACCACAGAGGTATGTGAACTCCCACATTCATTGCTGCT  900

seq1  CCATTCTCAATTTCTAAGGAATGGAATCAGCTTAGATGGTCATCAATTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTCAATTTCTAAGGAATGGAATCAGCTTAGATGGTCATCAATTAA  950

seq1  TAAATGTATGATGGTGGCAAAATACATACATAAGCACAACACAATTTTGT  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAAATGTATGATGGTGGCAAAATACATACATAAGCAC-ACACAATTTTGT  999

seq1  TCAGACCAGCAACGTGACCAATACCAAGGGCAGGGTAGCATACAGAAGCC  1050
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  TCAGACCAGCAACGTGACCAATACC-AGGGCAGGTTAGCATACAGAAGCC  1048

seq1  ACCTCTTGAAGCTCTTACAAGACCTTCTGCTAG-ACATCCTGCCCAACTC  1099
      |||||||| |||||||||||||| ||||||||| |||| |||||||||||
seq2  ACCTCTTG-AGCTCTTACAAGACTTTCTGCTAGAACAT-CTGCCCAACTC  1096

seq1  CTTGAGCATCCTGA--CTCTGAGAC  1122
      | ||||||||||||  |||||||||
seq2  C-TGAGCATCCTGAACCTCTGAGAC  1120

seq1: chr4_144464554_144465621
seq2: B6Ng01-281E07.g_66_1136 (reverse)

seq1  GCTCCTT-CACCT-ACCCATTCGATGCTCATATCCCTCTCCAAACAA--T  46
      ||||||| ||||| ||||| |||||||||||||||   |||||||||  |
seq2  GCTCCTTCCACCTAACCCAATCGATGCTCATATCCTCTTCCAAACAAATT  50

seq1  GTGCCTAGCAAACTGAGAACCCCTGAACCTCCTATGTATATCAGGCATAC  96
      |||| |||||||||||||| |||||||| |||||||||||||||||||||
seq2  GTGCTTAGCAAACTGAGAA-CCCTGAACTTCCTATGTATATCAGGCATAC  99

seq1  TTGAATCTCTTAACAGTACTATAAATTTCTCCACTCTTAGAAACAGTCTC  146
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGAATCTCTTAACAGTACTATAAATTTCTCCACTCTAAGAAACAGTCTC  149

seq1  ATTTAGACAGTTTCTAGTCGAGAATATTCCCAATATGTCCTATATGAAGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGACAGTTTCTAGTCGAGAATATTCCCAATATGTCCTATATGAAGA  199

seq1  ATAAAAGGGGCAGCCAGCATGAACCAATGCCAGGCACATGTACGAAAAGG  246
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATAAAAGGGGCAGCCAGCATGACCCAATGCCAGGCACATGTACGAAAAGG  249

seq1  CAAACTGAGTCCTTCAAGTGAACTTTCAGAGAGAATCCCCTATTTATTTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGAGTCCTTCAAGTGAACTTTCAGAGAGAATCCCCTATTTATTTA  299

seq1  ATCTTAGGCCTATGCATACTTGGGCATGCATATAATTAAAATCAGATGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGGCCTATGCATACTTGGGCATGCATATAATTAAAATCAGATGCA  349

seq1  TTATGGGAAAGGATGAGTTCTGTAGGAAGAATGGGCACATGGCATAATCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGAAAGGATGAGTTCTGTAGGAAGAATGGGCACATGGCATAATCT  399

seq1  ATCAATCAAAATACAGAACCCCTCAAGCCACTCTCCACTGTAGCCAGCCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCAAAATACAGAACCCCTCAAGCCACTCTCCACTGTAGCCAGCCC  449

seq1  CTCCTTCCTTTAGACCCTATAAGAAAGACATCCTAGGCCATAGACTAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCCTTTAGACCCTATAAGAAAGACATCCTAGGCCATAGACTAAAA  499

seq1  CTCTAGAATATTCTCTCGCTTGTGACCAGCTGTAAATCTTGATGATATAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAATATTCTCTCGCTTGTGACCAGCTGTAAATCTTGATGATATAT  549

seq1  TCTCTCTAATCCATATTAACCCTTCATTTCTAATAAATTTCTATCCCTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTAATCCATATTAACCCTTCATTTCTAATAAATTTCTATCCCTTT  599

seq1  GCAAATTTATGTAGCCCTCATTTTCAGTTCTTTAAGTGATAGGCAAAGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTTATGTAGCCCTCATTTTCAGTTCTTTAAGTGATAGGCAAAGAA  649

seq1  CCTGGAAACATTCACTCAGACACACACACACACCCTTGCAGGAACAGTTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAACATTCACTCAGACACACACACACACCCTTGCAGGAACAGTTG  699

seq1  TACCAGAGAGTCCATTCTCAATCAACAGTCAGCTCTCAGCCTCAATCACC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGAGAGTCCATTCTCAATCAACAGTCAGCTCTCAGCCTCAATCACC  749

seq1  ATGTAATTACACCCCAGCCATGCAGTAAATCTCCATCTTGCAATATCTTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTACACCCCAGCCATGCAGTAAATCTCCATCTTGCAATATCTTG  799

seq1  GGAGAGGCAGGAGAGAGGAGGAGGAAGACAGCATTTCCCAATAACTTGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGCAGGAGAGAGGAGGAGGAAGACAGCATTTCCCAATAACTTGTT  849

seq1  GTGCTTGGCCCAAAGTATCTGGGGAAGATATGGTGAGGCTCATGCCCTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGGCCCAAAGTATCTGGGGAAGATATGGTGAGGCTCATGCCCTAT  899

seq1  AAGAATGCCCTGGTATCACCAGGCTATGGTGATGCATCTGCCGGAACCCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCCCTGGTATCACCAGGCTATGGTGATGCATCTGCCGGAACCCC  949

seq1  CTGCCCCATTCCAACCCATTCTGTGGGCTAGGCCAGGCCCTGTATGCTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCATTCCAACCCATTCTGTGGGCTAGGCCAGGCCCTGTATGCTGC  999

seq1  AGTGTAAATCCTCCCAACTACCCCAGCCTTGGGAGCAGATCCCTTGGGGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAATCCTCCCAACTACCCCAGCCTTGGGAGCAGATCCCTTGGGGT  1049

seq1  CACTATCAAGAGCCAAGAATTC  1068
      ||||||||||||||||||||||
seq2  CACTATCAAGAGCCAAGAATTC  1071