BAC Information

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BAC

Clone NameB6Ng01-281G16
Chromosome4 (Build37)
Map Location 58,793,004 - 58,930,721
singlet/doubletdoublet
Overlap geneOlfr267, AI314180
Upstream geneAkap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2, LOC675306, LOC433711
Downstream geneLOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30, Slc46a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281G16.bB6Ng01-281G16.g
ACCGA080901GA080902
length1931,159
definitionB6Ng01-281G16.b B6Ng01-281G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,793,004 - 58,793,196)(58,929,595 - 58,930,721)
sequence
gaattcattctctatgttgtaaccagaagaatttctatcaagaaaatgcc
tgtaaacacctgctcaaacaaagtcaatggctgttaggcatacatattct
ctgatcctttggccttcttttggctccacacacaaagattcttgacttct
gatagaggagaggagaggagaggagaggagaggagaggagagg
gaattccttcagagacagggaggctaggaaagaaagaggtgtggccagag
aggcagagcaagcagcaaccaggactaagactgagagataatgagacatg
ggacatagaccagggcagtattgtcgggttagaaaagctgataatctgtc
cagctctagtgcctacgctattaaaaatatattatgaacatatttatcat
tataaatataagtctcagaactggtgctggcacagaaaagcctacagtta
tgtgtatgtacctgcgcacatgtgcacacaggcagtggttgtaaggtaca
caactatgtagatctgcaaaaagtcccaccattctccagtacagaaatac
ataattgcataaaaaacttctgatagcattactcacaacagtaaaaatga
agaacctaagggcttacaaaagacatctttgcatatgcatatctgtgtgg
gaaggcgtgagtgtgcatttgtgtcagttttcaggctagagttcaatggc
agatgtctttcccaattgtctccaccttatcgtttttgagatagggtctc
tcactgaatctagagttcttggtttggtagattagctggccaggaaaccc
cagggaacctcctgtttctgcctacccaggaatggaaattctatccctat
tctgtgcgtctggctttttatgtaggtgctgaggctggaactctggtctt
tcatggttgcacaacaagcaattcactgactcagtcatcccccagccctg
aaagcacagtgtaaaagccagcctacaaggacaatttaaaaatatagttt
gttatatatttatcaagcagacgttttaacagaatgaatacttacgtact
ttctggtcacaatgggtaagaatgcaggtttgagcaaggtgtggtagcac
attgtacttccagctccttggggacactaaaggtaggataattgtagagg
aacagcctgggtctaacaacaagtgaagttcagaagtccttccggtttta
taacaaggttggtcctcagaataagaagttaaagccagtaatggtagaat
cttgagttttcttatccatgtgacagaaatgccatggtttcctgtgccta
cctgattattcagacctgaatcagttagaaaaacataacccattcgaagt
actgacagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_58793004_58793196
seq2: B6Ng01-281G16.b_43_235

seq1  GAATTCATTCTCTATGTTGTAACCAGAAGAATTTCTATCAAGAAAATGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCTATGTTGTAACCAGAAGAATTTCTATCAAGAAAATGCC  50

seq1  TGTAAACACCTGCTCAAACAAAGTCAATGGCTGTTAGGCATACATATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACACCTGCTCAAACAAAGTCAATGGCTGTTAGGCATACATATTCT  100

seq1  CTGATCCTTTGGCCTTCTTTTGGCTCCACACACAAAGATTCTTGACTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCCTTTGGCCTTCTTTTGGCTCCACACACAAAGATTCTTGACTTCT  150

seq1  GATAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGG  193
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGG  193

seq1: chr4_58929595_58930721
seq2: B6Ng01-281G16.g_68_1226 (reverse)

seq1  GCTGTCAGTACTCTGAATGTGTTTTGTTTTCTTACTTGATTCA-GTCTGA  49
      ||||||||||||  ||||| ||| ||||||  ||  ||||||| ||||||
seq2  GCTGTCAGTACTTCGAATGGGTTATGTTTTTCTAACTGATTCAGGTCTGA  50

seq1  TTAATCAGGTAG--CCAGGGAA-CAT-GCA-TTCTGTCACATGGATA--G  92
       |||||||||||   |||| || ||| ||| ||||||||||||||||   
seq2  ATAATCAGGTAGGCACAGGAAACCATGGCATTTCTGTCACATGGATAAGA  100

seq1  AAACTC-AGA-TCTACCA-TACT-GCTTTTAC-TCTTATTCTGAGGAC--  135
      |||||| ||| ||||||| |||| ||||| || |||||||||||||||  
seq2  AAACTCAAGATTCTACCATTACTGGCTTTAACTTCTTATTCTGAGGACCA  150

seq1  AACTTG-TAT-AAACCGGGAGGAC-TCTGAAC-TCAC-TGT--GTAGA-C  177
      | |||| ||| ||||||| ||||| ||||||| |||| |||   |||| |
seq2  ACCTTGTTATAAAACCGGAAGGACTTCTGAACTTCACTTGTTGTTAGACC  200

seq1  CAGGCTG-TCCTCTACAATTAT-CTACC-TTAGTGTCCCCA--GAGCTGG  222
      ||||||| |||||||||||||| ||||| ||||||||||||  |||||||
seq2  CAGGCTGTTCCTCTACAATTATCCTACCTTTAGTGTCCCCAAGGAGCTGG  250

seq1  GAGTAC-ATGTGCTACCACACC-TGCTCAAACCTGCATTCTTACCCATTG  270
       ||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGTACAATGTGCTACCACACCTTGCTCAAACCTGCATTCTTACCCATTG  300

seq1  TGACCAGAAAGTACGTAAGTATTCATTCTGTT-AAACGTCTGCTTGATAA  319
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGACCAGAAAGTACGTAAGTATTCATTCTGTTAAAACGTCTGCTTGATAA  350

seq1  ATATATAACAAACTATATTTTTAAATTGTCCTTGTAGGCTGGCTTTTACA  369
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATAACAAACTATATTTTTAAATTGTCCTTGTAGGCTGGCTTTTACA  400

seq1  CTGTGCTTTCAGGGCTGGGGGATGACTGAGTCAGTGAATTGCTTGTTGTG  419
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTTCAGGGCTGGGGGATGACTGAGTCAGTGAATTGCTTGTTGTG  450

seq1  CAACCATG-AAGACCAGAGTTCCAGCCTCAGCACCTACATAAAAAGCCAG  468
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATGAAAGACCAGAGTTCCAGCCTCAGCACCTACATAAAAAGCCAG  500

seq1  ACGCACAGAATAGGGATAGAATTTCCATTCCTGGGTAGGCAGAAACAGGA  518
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACAGAATAGGGATAGAATTTCCATTCCTGGGTAGGCAGAAACAGGA  550

seq1  GGTTCCCTGGGGTTTCCTGGCCAGCTAATCTACCAAACCAAGAACTCTAG  568
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCTGGGGTTTCCTGGCCAGCTAATCTACCAAACCAAGAACTCTAG  600

seq1  ATTCAGTGAGAGACCCTATCTCAAAAACGATAAGGTGGAGACAATTGGGA  618
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTGAGAGACCCTATCTCAAAAACGATAAGGTGGAGACAATTGGGA  650

seq1  AAGACATCTGCCATTGAACTCTAGCCTGAAAACTGACACAAATGCACACT  668
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCTGCCATTGAACTCTAGCCTGAAAACTGACACAAATGCACACT  700

seq1  CACGCCTTCCCACACAGATATGCATATGCAAAGATGTCTTTTGTAAGCCC  718
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTTCCCACACAGATATGCATATGCAAAGATGTCTTTTGTAAGCCC  750

seq1  TTAGGTTCTTCATTTTTACTGTTGTGAGTAATGCTATCAGAAGTTTTTTA  768
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTCTTCATTTTTACTGTTGTGAGTAATGCTATCAGAAGTTTTTTA  800

seq1  TGCAATTATGTATTTCTGTACTGGAGAATGGTGGGACTTTTTGCAGATCT  818
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTATGTATTTCTGTACTGGAGAATGGTGGGACTTTTTGCAGATCT  850

seq1  ACATAGTTGTGTACCTTACAACCACTGCCTGTGTGCACATGTGCGCAGGT  868
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTGTGTACCTTACAACCACTGCCTGTGTGCACATGTGCGCAGGT  900

seq1  ACATACACATAACTGTAGGCTTTTCTGTGCCAGCACCAGTTCTGAGACTT  918
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACATAACTGTAGGCTTTTCTGTGCCAGCACCAGTTCTGAGACTT  950

seq1  ATATTTATAATGATAAATATGTTCATAATATATTTTTAATAGCGTAGGCA  968
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTATAATGATAAATATGTTCATAATATATTTTTAATAGCGTAGGCA  1000

seq1  CTAGAGCTGGACAGATTATCAGCTTTTCTAACCCGACAATACTGCCCTGG  1018
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCTGGACAGATTATCAGCTTTTCTAACCCGACAATACTGCCCTGG  1050

seq1  TCTATGTCCCATGTCTCATTATCTCTCAGTCTTAGTCCTGGTTGCTGCTT  1068
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTCCCATGTCTCATTATCTCTCAGTCTTAGTCCTGGTTGCTGCTT  1100

seq1  GCTCTGCCTCTCTGGCCACACCTCTTTCTTTCCTAGCCTCCCTGTCTCTG  1118
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCCTCTCTGGCCACACCTCTTTCTTTCCTAGCCTCCCTGTCTCTG  1150

seq1  AAGGAATTC  1127
      |||||||||
seq2  AAGGAATTC  1159