BAC Information

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BAC

Clone NameB6Ng01-281I23
Chromosome4 (Build37)
Map Location 93,356,492 - 93,497,634
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281I23.bB6Ng01-281I23.g
ACCGA081006GA081007
length1,138931
definitionB6Ng01-281I23.b B6Ng01-281I23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,356,492 - 93,357,614)(93,496,713 - 93,497,634)
sequence
gaattctgtttcaaatgtactcttttgaataaaaatggacttaaacaaat
gtacttatcaacagtgctgctttatattttgttatttttgttattatttc
atttcctaaaatagagtaattgaatgaaggcaaaacgactccacatttct
aaccagacaagtttaggaggaagtattttcaggttcccttctgccccaaa
caagtaatgtaactaagagagctaagactatttctagaccacatgactta
aacactgctgcccatttagaggacatcgtgaagccaaacataactccctg
acttgcttgttcttaacaaatcaattgtaaaaaacatctcaacaggaaaa
gcattactactcataacttgagttgtaatgcttagccacaaacaaaagct
agtgtagcatcatttccatccttagcctacaggaaagtacatgacatggt
aggtagcctactggcttttgataaaaatgagtaatctagagaaacaaaga
agaaaggttaagtctttttatccacaagcagatgataggatgtttttaag
taggtgttgctttaggaactttggcttaataataaaccataaatagagat
tggtgagaaagggagaatagtataataaattatttaagtcaataatgtga
gaggggaataatattttgaagaggcagaggctctggttttaatagaaagc
cataaatagttgttaattcaagtagcctgttaaaatggcatcatttgtgt
ctgagagtctcaacttaatccagttgagatgtaggccagactcagattgc
tcatgtagcttgatatcacaatctagaacagtcttccataccatctagac
cttgactgagcctttgctcctcttacaaggaaatgctttctctttatcta
ttatgcacagtgataattcactatgtaagcaataaaaattagttttttaa
ttagaaagtgcccaaaatttcacattattctttttctagcactttttctg
tacatgtctgggaaaagatccactgtataatctgcaaaatattactttgc
aacctttttaaaccatttaaatatggtagcttgtgctccaccctttttat
cccaccacttcttgaaggtggaagccaggtgagtcact

gaattcaataaagggaatgtccttctagtctcttggaagcctgcctgact
gtttctctggggacagtgtcacaactctgtgttattttcaaattccacag
ttgcaattagaagagaactcaaaacataaaaatgtggggttttttttttt
gttgttgtttgtttgttttgtttgtttgttttgtagagcatttgtttcct
tcctgatcaatgtgcagaatatgttttttaaaccaatctttattttttcc
ttatgtttttcttctaaattttaatgaacacaacctgtaaagttaatcaa
ggttaatttatttatttctaccaaatgtgctagaaattgggagaggaatc
agcaaggttcagttaatattggcaagaacgagaggagaaggacatcatca
catttaatcacatttcatcatcacatttaatattttacaggcttcttacc
atcttcattaaacatgtttgatgctgtttatgctgatgccaaaggaggtt
aaacacaacttaagtatgttgttaatttgtaagaatgtttaatacaaaaa
caaataaacataacctcatgaatatgtagtgctgctgatggcagctaaaa
tgaattctggtcatcattaaagctttcctgtaaggtcaaagttgcctgtt
tattgcttaaactgctggggtgttctttgacactgttgggattgtataag
agtagccatttggtttctgaattgtattctgaatttctgtctcttctttc
actgcatgtcttgccatgtctaagaattctaaagacttttgaaggactgg
ttggctctcaggtcctttctgtcttagaatgggagatttcttgccacaga
atattccacctgctgtgtatttatttaatttgttctatactaggaagatt
tcttaacaatactagtctttgcgttgcatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93356492_93357614
seq2: B6Ng01-281I23.b_48_1185

seq1  GAATTCTGTTTCAAATGTACTCTTTTGAATAAAAATGGACTTAAACAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTCAAATGTACTCTTTTGAATAAAAATGGACTTAAACAAAT  50

seq1  GTACTTATCAACAGTGCTGCTTTATATTTTGTTATTTTTGTTATTATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTATCAACAGTGCTGCTTTATATTTTGTTATTTTTGTTATTATTTC  100

seq1  ATTTCCTAAAATAGAGTAATTGAATGAAGGCAAAACGACTCCACATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAAAATAGAGTAATTGAATGAAGGCAAAACGACTCCACATTTCT  150

seq1  AACCAGACAAGTTTAGGAGGAAGTATTTTCAGGTTCCCTTCTGCCCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGACAAGTTTAGGAGGAAGTATTTTCAGGTTCCCTTCTGCCCCAAA  200

seq1  CAAGTAATGTAACTAAGAGAGCTAAGACTATTTCTAGACCACATGACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAATGTAACTAAGAGAGCTAAGACTATTTCTAGACCACATGACTTA  250

seq1  AACACTGCTGCCCATTTAGAGGACATCGTGAAGCCAAACATAACTCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGCTGCCCATTTAGAGGACATCGTGAAGCCAAACATAACTCCCTG  300

seq1  ACTTGCTTGTTCTTAACAAATCAATTGTAAAAAACATCTCAACAGGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTTGTTCTTAACAAATCAATTGTAAAAAACATCTCAACAGGAAAA  350

seq1  GCATTACTACTCATAACTTGAGTTGTAATGCTTAGCCACAAACAAAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACTACTCATAACTTGAGTTGTAATGCTTAGCCACAAACAAAAGCT  400

seq1  AGTGTAGCATCATTTCCATCCTTAGCCTACAGGAAAGTACATGACATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGCATCATTTCCATCCTTAGCCTACAGGAAAGTACATGACATGGT  450

seq1  AGGTAGCCTACTGGCTTTTGATAAAAATGAGTAATCTAGAGAAACAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGCCTACTGGCTTTTGATAAAAATGAGTAATCTAGAGAAACAAAGA  500

seq1  AGAAAGGTTAAGTCTTTTTATCCACAAGCAGATGATAGGATGTTTTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTTAAGTCTTTTTATCCACAAGCAGATGATAGGATGTTTTTAAG  550

seq1  TAGGTGTTGCTTTAGGAACTTTGGCTTAATAATAAACCATAAATAGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTGCTTTAGGAACTTTGGCTTAATAATAAACCATAAATAGAGAT  600

seq1  TGGTGAGAAAGGGAGAATAGTATAATAAATTATTTAAGTCAATAATGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGAAAGGGAGAATAGTATAATAAATTATTTAAGTCAATAATGTGA  650

seq1  GAGGGGAATAATATTTTGAAGAGGCAGAGGCTCTGGTTTTAATAGAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAATAATATTTTGAAGAGGCAGAGGCTCTGGTTTTAATAGAAAGC  700

seq1  CATAAATAGTTGTTAATTCAAGTAGCCTGTTAAAATGGCATCATTTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATAGTTGTTAATTCAAGTAGCCTGTTAAAATGGCATCATTTGTGT  750

seq1  CTGAGAGTCTCAACTTAATCCAGTTGAGATGTAGGCCAGACTCAGATTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTCTCAACTTAATCCAGTTGAGATGTAGGCCAGACTCAGATTGC  800

seq1  TCATGTAGCTTGATATCACAATCTAGAACAGTCTTCCATACCATCTAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTAGCTTGATATCACAATCTAGAACAGTCTTCCATACCATCTAGAC  850

seq1  CTTGACTGAGCCTTTGCTCCTCTTACAAGGAAATGCTTTCTCTTTATCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTGAGCCTTTGCTCCTCTTACAAGGAAATGCTTTCTCTTTATCTA  900

seq1  -TATGCACAGTGATAATTCACTATGTAAGCAATAAAAATTAGTTTTTTAA  949
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCACAGTGATAATTCACTATGTAAGCAATAAAAATTAGTTTTTTAA  950

seq1  TTAGAAAGTG-CCAAAATTTCACATTATTC-TTTTCTAGCAC-TTTTCTG  996
      |||||||||| ||||||||||||||||||| ||||||||||| |||||||
seq2  TTAGAAAGTGCCCAAAATTTCACATTATTCTTTTTCTAGCACTTTTTCTG  1000

seq1  TTACATGTCTGGGAAAAGAT-CACTGTATAAATCTGCAAAATA-TAC-TT  1043
       ||||||||||||||||||| |||||||| ||||||||||||| ||| ||
seq2  -TACATGTCTGGGAAAAGATCCACTGTAT-AATCTGCAAAATATTACTTT  1048

seq1  GCAA-CTTTTTAAA-CAATTAAATATGGTAGC-TGTGCT-CACC--TTTT  1087
      |||| ||||||||| || |||||||||||||| |||||| ||||  ||||
seq2  GCAACCTTTTTAAACCATTTAAATATGGTAGCTTGTGCTCCACCCTTTTT  1098

seq1  ATCCCACCAC-TCTGGAAGGT-GAAG-CAGGTGAG-CACT  1123
      |||||||||| ||| |||||| |||| |||||||| ||||
seq2  ATCCCACCACTTCTTGAAGGTGGAAGCCAGGTGAGTCACT  1138


seq1: chr4_93496713_93497634
seq2: B6Ng01-281I23.g_68_998 (reverse)

seq1  GCATGCAACGC-AAGACTAGTATTG-TAAGAAATCTTCCTAGTATAGAAC  48
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  GCATGCAACGCAAAGACTAGTATTGTTAAGAAATCTTCCTAGTATAGAAC  50

seq1  -AATTAAATAAATACACAGCAGGTTGAATAATCTGTGGC-AGAAATCT-C  95
       ||||||||||||||||||||||| ||||| |||||||| |||||||| |
seq2  AAATTAAATAAATACACAGCAGGTGGAATATTCTGTGGCAAGAAATCTCC  100

seq1  CATTCTAAGACAG-AAGGACCTGAGAGCCAACCAGTCCTTC-AAAGTC-T  142
      ||||||||||||| ||||||||||||||||||||||||||| |||||| |
seq2  CATTCTAAGACAGAAAGGACCTGAGAGCCAACCAGTCCTTCAAAAGTCTT  150

seq1  TAGAATTCTTAGACATGGCAAGACATGCAGTGAAAGAAGAGACAG-AATT  191
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TAGAATTCTTAGACATGGCAAGACATGCAGTGAAAGAAGAGACAGAAATT  200

seq1  CAGAATACAATTCAGAAACCAAATGGCTACTCTTATACAATCCCAACAGT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATACAATTCAGAAACCAAATGGCTACTCTTATACAATCCCAACAGT  250

seq1  GTCAAAGAACACCCCAGCAGTTTAAGCAATAAACAGGCAACTTTGACCTT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGAACACCCCAGCAGTTTAAGCAATAAACAGGCAACTTTGACCTT  300

seq1  ACAGGAAAGCTTTAATGATGACCAGAATTCATTTTAGCTGCCATCAGCAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAGCTTTAATGATGACCAGAATTCATTTTAGCTGCCATCAGCAG  350

seq1  CACTACATATTCATGAGGTTATGTTTATTTGTTTTTGTATTAAACATTCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACATATTCATGAGGTTATGTTTATTTGTTTTTGTATTAAACATTCT  400

seq1  TACAAATTAACAACATACTTAAGTTGTGTTTAACCTCCTTTGGCATCAGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATTAACAACATACTTAAGTTGTGTTTAACCTCCTTTGGCATCAGC  450

seq1  ATAAACAGCATCAAACATGTTTAATGAAGATGGTAAGAAGCCTGTAAAAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGCATCAAACATGTTTAATGAAGATGGTAAGAAGCCTGTAAAAT  500

seq1  ATTAAATGTGATGATGAAATGTGATTAAATGTGATGATGTCCTTCTCCTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGTGATGATGAAATGTGATTAAATGTGATGATGTCCTTCTCCTC  550

seq1  TCGTTCTTGCCAATATTAACTGAACCTTGCTGATTCCTCTCCCAATTTCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCTTGCCAATATTAACTGAACCTTGCTGATTCCTCTCCCAATTTCT  600

seq1  AGCACATTTGGTAGAAATAAATAAATTAACCTTGATTAACTTTACAGGTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATTTGGTAGAAATAAATAAATTAACCTTGATTAACTTTACAGGTT  650

seq1  GTGTTCATTAAAATTTAGAAGAAAAACATAAGGAAAAAATAAAGATTGGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATTAAAATTTAGAAGAAAAACATAAGGAAAAAATAAAGATTGGT  700

seq1  TTAAAAAACATATTCTGCACATTGATCAGGAAGGAAACAAATGCTCTACA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAACATATTCTGCACATTGATCAGGAAGGAAACAAATGCTCTACA  750

seq1  AAACAAACAAACAAAACAAACAAACAACAACAAAAAAAAAAACCCCACAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAAACAAACAAACAACAACAAAAAAAAAAACCCCACAT  800

seq1  TTTTATGTTTTGAGTTCTCTTCTAATTGCAACTGTGGAATTTGAAAATAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTTTTGAGTTCTCTTCTAATTGCAACTGTGGAATTTGAAAATAA  850

seq1  CACAGAGTTGTGACACTGTCCCCAGAGAAACAGTCAGGCAGGCTTCCAAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTTGTGACACTGTCCCCAGAGAAACAGTCAGGCAGGCTTCCAAG  900

seq1  AGACTAGAAGGACATTCCCTTTATTGAATTC  922
      |||||||||||||||||||||||||||||||
seq2  AGACTAGAAGGACATTCCCTTTATTGAATTC  931


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