BAC Information

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BAC

Clone NameB6Ng01-281J20
Chromosome4 (Build37)
Map Location 52,203,831 - 52,204,918
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040814, LOC384015
Downstream geneLOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281J20.bB6Ng01-281J20.g
ACCGA081046GA081047
length1,2031,116
definitionB6Ng01-281J20.b B6Ng01-281J20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggattaccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaatcactctggaaatcagtctggcgtttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gccccttaacagaggaatggatacagaaaatgtggtacatctgcacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacaccatatgtactccctgataattggatattagcccaaaacc
taggatacccaagatttaagatacaatttcctaaacacatgaaactgaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaacgtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgctggggccctagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcacagggctccc
aatggaggagctagagaaagtagccaaggagctaaagggatctgcaccct
ataggtggaacaacattttgactaacagtaccccgagctctgactctagc
tgcatatgtatcaaagatggcctagtcgccatcactggaaagaagaggcc
cattgacaccgctaacttgtatggcccagtacaaggggaacgcagccaaa
ggggagtggcttggtaagctagtgcgttggacttgaactgtcgatgaacg
tct
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccggaatttctcgtcccggaatttctcg
tcccgtcccgggtttcggcaccaattgttattagacgcgttctcacgacc
ggccaggaaagacgcaacaaaccagaatcttctgcggcaaagctttattg
cttacatcttcaggagccagagtgcaagagagcaagcccgcaagaagcaa
gagagcaagcccgcaaatggcgaaaccccatccctttttaaggagaatta
tcctccacctaggatgtattactccctgattggctgcagcccatcggccc
agttgtcatcacgggaaaggcagaacacatggtgggaaaactgcccttgc
atgtgtgcagactatgtttaccacttagaacacagctgtcagtgccatct
tataatggcaaatgtgagggcggctcctcacatcaagggactcagaacta
taagaatcttccgaatacagcacaaagcaaaacctatagtgcttgcttta
ttttatcttttaaattttaattaaaatataattaaatcacttttctccct
cccttttcttccttcaatccctctcaaattgatgacctcaatattattat
agctattattattaaatatgtacgtgaatatataaatatagccttctgaa
tcactttagcattacttgttcctgtatgatttcagggatgaacactctgt
atgggataaccaatcaagggcctcgctcattcctgaggaagacgaattct
ctccctctctgcagtcatttgtttcttatacttgtttgtctagaggcagt
gtctgtgagatttctctcttccatattagttgtctattaatattattatt
atttatgacttgttgagcatgaaaaggggagataggactggcagattcaa
tgagtggatgagaaatggggaaaatgaagggatggttctccaggtggaga
aggaaagaagcctcccacctcagaaggtgaaaaggaaaggaaggacaaaa
aaacactctaggctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_52203831_52204918
seq2: B6Ng01-281J20.g_100_1179

seq1  TTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGGAACCTTTATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGG  50

seq1  GATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAATTTCTCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCCTTGCGCCAGTCCCGAGTTTTTTCTCGTCCCGGAATTTCTCGT  100

seq1  CCCGGAATTTCTCGTCCCGTCCCGGGTTTCGGCACCAATTGTTATTAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGAATTTCTCGTCCCGTCCCGGGTTTCGGCACCAATTGTTATTAGAC  150

seq1  GCGTTCTCACGACCGGCCAGGAAAGACGCAACAAACCAGAATCTTCTGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCTCACGACCGGCCAGGAAAGACGCAACAAACCAGAATCTTCTGCG  200

seq1  GCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGTGCAAGAGAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGTGCAAGAGAGCAAG  250

seq1  CCCGCAAGAAGCAAGAGAGCAAGCCCGCAAATGGCGAAACCCCATCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCAAGAAGCAAGAGAGCAAGCCCGCAAATGGCGAAACCCCATCCCTT  300

seq1  TTTAAGGAGAATTATCCTCCACCTAGGATGTATTACTCCCTGATTGGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGAGAATTATCCTCCACCTAGGATGTATTACTCCCTGATTGGCTG  350

seq1  CAGCCCATCGGCCCAGTTGTCATCACGGGAAAGGCAGAACACATGGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCATCGGCCCAGTTGTCATCACGGGAAAGGCAGAACACATGGTGGG  400

seq1  AAAACTGCCCTTGCATGTGTGCAGACTATGTTTACCACTTAGAACACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGCCCTTGCATGTGTGCAGACTATGTTTACCACTTAGAACACAGC  450

seq1  TGTCAGTGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCTCACATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCTCACATCAA  500

seq1  GGGACTCAGAACTATAAGAATCTTCCGAATACAGCACAAAGCAAAACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCAGAACTATAAGAATCTTCCGAATACAGCACAAAGCAAAACCTA  550

seq1  TAGTGCTTGCTTTATTTTATCTTTTAAATTTTAATTAAAATATAATTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTTGCTTTATTTTATCTTTTAAATTTTAATTAAAATATAATTAAA  600

seq1  TCACTTTTCTCCCTCCCTTTTCTTCCTTCAATCCCTCTCAAATTGATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTCTCCCTCCCTTTTCTTCCTTCAATCCCTCTCAAATTGATGAC  650

seq1  CTCAATATTATTATAGCTATTATTATTAAATATGTACGTGAATATATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATATTATTATAGCTATTATTATTAAATATGTACGTGAATATATAAA  700

seq1  TATAGCCTTCTGAATCACTTTAGCATTACTTGTTCCTGTATGATTTCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCTTCTGAATCACTTTAGCATTACTTGTTCCTGTATGATTTCAGG  750

seq1  GATGAACACTCTGTATGGGATAACCAATCAAGGGCCTCGCTCATTCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACACTCTGTATGGGATAACCAATCAAGGGCCTCGCTCATTCCTGA  800

seq1  GGAAGACGAATTCTCTCCCTCTCTGCAGTCATTTGTTTCTTATACTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACGAATTCTCTCCCTCTCTGCAGTCATTTGTTTCTTATACTTGTT  850

seq1  TGTCTAGAGGCAGGTGTCTGTGAGATTTCTCTCTTCCATATTAGTTGTCT  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGAGGCA-GTGTCTGTGAGATTTCTCTCTTCCATATTAGTTGTCT  899

seq1  ATTAATATTATTATTATTTATGACTTGTTTGAGCATGAAAAGGGGAAGAT  950
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  ATTAATATTATTATTATTTATGACTTG-TTGAGCATGAAAAGGGG-AGAT  947

seq1  AGGGAACTGGCAAGATTCAAATGAAGTGGATGAAGAAATGGGGAAAATG-  999
      |||  |||||| |||||| |||| |||||||| |||||||||||||||| 
seq2  AGG--ACTGGC-AGATTC-AATG-AGTGGATG-AGAAATGGGGAAAATGA  991

seq1  AGGGATGGTTCTCCAGTTGGAGAAGGAAAGGAAGCTCC--ACTCAGAAAG  1047
      |||||||||||||||| ||||||||||||| |  ||||   ||||||| |
seq2  AGGGATGGTTCTCCAGGTGGAGAAGGAAAGAAGCCTCCCACCTCAGAAGG  1041

seq1  TGGAAAAGGAAA-GAAGGACAAAAAAAACACTCTAAGGCTGC  1088
      | |||||||||| ||||||| ||||||||||||| |||||||
seq2  T-GAAAAGGAAAGGAAGGAC-AAAAAAACACTCT-AGGCTGC  1080