BAC Information

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BAC

Clone NameB6Ng01-281K13
Chromosome4 (Build37)
Map Location 144,973,069 - 145,127,204
singlet/doubletdoublet
Overlap geneLOC666282, 9230115A19Rik, LOC195576, LOC622846
Upstream genePramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8
Downstream geneLOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281K13.bB6Ng01-281K13.g
ACCGA081080GA081081
length1,151848
definitionB6Ng01-281K13.b B6Ng01-281K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,973,069 - 144,974,209)(145,126,358 - 145,127,204)
sequence
gaattccaagccaacctggacttagggagagcatataatagacactacac
aaaaaagtgatacttccagtggtgtgtgtacacccctggtagccagtgtc
tcccttaaggcaaagtaagaccacgtgagaccagcacaccaggacatcaa
gtggaccagcagaaacaagacaccatcttggggacaggcaccatatctgc
ccagggactgaggacatcaccagccaaaccctgctagcatttagtatcct
tgaagcaagctctcttcctaaggctagctcaggaccctggctcagatgcc
tctagcctcttagggcagggagcttgcctaacacagagccagaatatcag
atgcattaaacctttccttctaggaattcaaaaccagtgctgagggtaca
ggatggataaggggatgctcaccatgtagaagagggcattgcatctaaat
cagcaggagttacattctgcaccccaccctagttgcaactctccactggg
atccacaggaatcccaatgttctcaacactcatgtaacttgcacagcctc
tatcagattttcatgtctctgcttatcccatggtgttacacacagtacaa
gtggcaagtggcacccagatccacaggctcaggaaacaggcagcagttga
taaggaaacagtacacacgtgtgaggccaatgagaaacaacagtcccccc
taagctagggtaattgtttcaatgctgtccctggtcatacaaaccttacc
atccatcgaggagcccctttgttccttgccccattcctctcaaaatattt
ggtccatacctacattcagggagaaatgtcctcccagaggcagcttctaa
agagaggtggttttaatggacagaaccaaagccagtcgaagccctaggtc
agatgcagtccaagatgcttagacaccaggctgcccttcctcagtccaca
gctcagagtgatctggtggaagtgtgtgctcacaacatgttttcttcttc
caccaccactgctcttattgcaggcctgggaatacagctctaggtttggg
ggaaaagaagagcaggatgagtgattgaattcctccccactacccctgac
aggtcacaatgaattgccttggtttatttaggggcattgaaaacaccaca
c
gaattctctgatggattctcaaattaaagttgtgggtaaagcatttgtca
cattgactacatttgtgaggtgtctctcctttatgaattctctgatgcat
agtaagattgaatttgtgtttaaaacatttgtcacattcactacatttgt
aaattatctcttctgtatgaattccctgatgaatactaagatggatctga
tgggtaaggcatttgtcacttttactactttcgtaaggtttctttccatg
ataaattctctgctgactttgtagtttttctctctgggtaagatatttgt
gaaattcactacatttgtaagggttccctccaatattgtttcgtttcacc
atgactttatgtttagaaacaaaaaccttctctaattctgcatttcggtt
gtgttttttcttctgcatgtaaattccttgattgacactaatggtagaaa
acaaacttaaactgtttacagagtcattgtatttgcaaacttctttagtg
ttcctgggtttaagtcttttttggttcgagtattgaagagagtcagagct
gtgattagttttgtaaggtgtacactggagggattcaagaatcacattgc
taagcttgtcccatttagaagacttctcttgaatattcatgtgttcatgg
acaatgtactggctgtcttgatccaataccttcccattctttccacgtat
gcaatgattttctggaaaaaaaaggggggggcaattagaggtgacatgaa
ttacttatataaggagtaaaggactcaataatcagtgagcttatggattc
gtactctcaagaaaggtttctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144973069_144974209
seq2: B6Ng01-281K13.b_46_1196

seq1  GAATTCCAAGCCAACCTGGACTTAGGGAGAGCATATAATAGACACTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCAACCTGGACTTAGGGAGAGCATATAATAGACACTACAC  50

seq1  AAAAAAGTGATACTTCCAGTGGTGTGTGTACACCCCTGGTAGCCAGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTGATACTTCCAGTGGTGTGTGTACACCCCTGGTAGCCAGTGTC  100

seq1  TCCCTTAAGGCAAAGTAAGACCACGTGAGACCAGCACACCAGGACATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAAGGCAAAGTAAGACCACGTGAGACCAGCACACCAGGACATCAA  150

seq1  GTGGACCAGCAGAAACAAGACACCATCTTGGGGACAGGCACCATATCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACCAGCAGAAACAAGACACCATCTTGGGGACAGGCACCATATCTGC  200

seq1  CCAGGGACTGAGGACATCACCAGCCAAACCCTGCTAGCATTTAGTATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGACTGAGGACATCACCAGCCAAACCCTGCTAGCATTTAGTATCCT  250

seq1  TGAAGCAAGCTCTCTTCCTAAGGCTAGCTCAGGACCCTGGCTCAGATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAAGCTCTCTTCCTAAGGCTAGCTCAGGACCCTGGCTCAGATGCC  300

seq1  TCTAGCCTCTTAGGGCAGGGAGCTTGCCTAACACAGAGCCAGAATATCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTCTTAGGGCAGGGAGCTTGCCTAACACAGAGCCAGAATATCAG  350

seq1  ATGCATTAAACCTTTCCTTCTAGGAATTCAAAACCAGTGCTGAGGGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTAAACCTTTCCTTCTAGGAATTCAAAACCAGTGCTGAGGGTACA  400

seq1  GGATGGATAAGGGGATGCTCACCATGTAGAAGAGGGCATTGCATCTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGATAAGGGGATGCTCACCATGTAGAAGAGGGCATTGCATCTAAAT  450

seq1  CAGCAGGAGTTACATTCTGCACCCCACCCTAGTTGCAACTCTCCACTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGAGTTACATTCTGCACCCCACCCTAGTTGCAACTCTCCACTGGG  500

seq1  ATCCACAGGAATCCCAATGTTCTCAACACTCATGTAACTTGCACAGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACAGGAATCCCAATGTTCTCAACACTCATGTAACTTGCACAGCCTC  550

seq1  TATCAGATTTTCATGTCTCTGCTTATCCCATGGTGTTACACACAGTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGATTTTCATGTCTCTGCTTATCCCATGGTGTTACACACAGTACAA  600

seq1  GTGGCAAGTGGCACCCAGATCCACAGGCTCAGGAAACAGGCAGCAGTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAGTGGCACCCAGATCCACAGGCTCAGGAAACAGGCAGCAGTTGA  650

seq1  TAAGGAAACAGTACACACGTGTGAGGCCAATGAGAAACAACAGTCCCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAACAGTACACACGTGTGAGGCCAATGAGAAACAACAGTCCCCCC  700

seq1  TAAGCTAGGGTAATTGTTTCAATGCTGTCCCTGGTCATACAAACCTTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAGGGTAATTGTTTCAATGCTGTCCCTGGTCATACAAACCTTACC  750

seq1  ATCCATCGAGGAGCCCCTTTGTTCCTTGCCCCATTCCTCTCAAAATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCGAGGAGCCCCTTTGTTCCTTGCCCCATTCCTCTCAAAATATTT  800

seq1  GGTCCATACCTACATTCAGGGAGAAATGTCCTCCCAGAGGCAGCTTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATACCTACATTCAGGGAGAAATGTCCTCCCAGAGGCAGCTTCTAA  850

seq1  AGAGAGGTGGTTTTAATGGACAGAACCAAAGCCAGTCGAAGCCCTAGGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGTGGTTTTAATGGACAGAACCAAAGCCAGTCGAAGCCCTAGGTC  900

seq1  AGGATGCAGTCCAAGATGCTTAGACACCAGGCTGCCCTTCCTCAGTCCAC  950
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-GATGCAGTCCAAGATGCTTAGACACCAGGCTGCCCTTCCTCAGTCCAC  949

seq1  AGCTCAGAGTGATCTGGTGGAAGTGTGTGCTCAC-ACATGTTTTCTTCTT  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGCTCAGAGTGATCTGGTGGAAGTGTGTGCTCACAACATGTTTTCTTCTT  999

seq1  CCA-CACCACTGCTC-TATTGCAGGCCTGGGAATACAGCTCTAGGTTTGG  1047
      ||| ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCACCACCACTGCTCTTATTGCAGGCCTGGGAATACAGCTCTAGGTTTGG  1049

seq1  GG--AGAGAAGAGCAGGATGAGTGA-TGGATTCC-CCCAACTACCCTGGA  1093
      ||  | ||||||||||||||||||| || ||||| ||| |||||||  ||
seq2  GGGAAAAGAAGAGCAGGATGAGTGATTGAATTCCTCCCCACTACCCCTGA  1099

seq1  CAGTCCAC-ATGAA-TGCCT--GTTTATTTAGGGGAATTGAAAACACCAC  1139
      |||  ||| ||||| |||||  ||||||||||||| ||||||||||||||
seq2  CAGGTCACAATGAATTGCCTTGGTTTATTTAGGGGCATTGAAAACACCAC  1149

seq1  AC  1141
      ||
seq2  AC  1151

seq1: chr4_145126358_145127204
seq2: B6Ng01-281K13.g_71_918 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACCTTTCTTGAGAGTACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACCTTTCTTGAGAGTACGA  50

seq1  ATCCATAAGCTCACTGATTATTGAGTCCTTTACTCCTTATATAAGTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAAGCTCACTGATTATTGAGTCCTTTACTCCTTATATAAGTAATT  100

seq1  CATGTCACCTCTAATTG-CCCCCCCTTTTTTTTCCAGAAAATCATTGCAT  149
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CATGTCACCTCTAATTGCCCCCCCCTTTTTTTTCCAGAAAATCATTGCAT  150

seq1  ACGTGGAAAGAATGGGAAGGTATTGGATCAAGACAGCCAGTACATTGTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGAAAGAATGGGAAGGTATTGGATCAAGACAGCCAGTACATTGTCC  200

seq1  ATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGGACAAGCTTAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACACATGAATATTCAAGAGAAGTCTTCTAAATGGGACAAGCTTAGC  250

seq1  AATGTGATTCTTGAATCCCTCCAGTGTACACCTTACAAAACTAATCACAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATTCTTGAATCCCTCCAGTGTACACCTTACAAAACTAATCACAG  300

seq1  CTCTGACTCTCTTCAATACTCGAACCAAAAAAGACTTAAACCCAGGAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTCTCTTCAATACTCGAACCAAAAAAGACTTAAACCCAGGAACA  350

seq1  CTAAAGAAGTTTGCAAATACAATGACTCTGTAAACAGTTTAAGTTTGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAAGTTTGCAAATACAATGACTCTGTAAACAGTTTAAGTTTGTTT  400

seq1  TCTACCATTAGTGTCAATCAAGGAATTTACATGCAGAAGAAAAAACACAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCATTAGTGTCAATCAAGGAATTTACATGCAGAAGAAAAAACACAA  450

seq1  CCGAAATGCAGAATTAGAGAAGGTTTTTGTTTCTAAACATAAAGTCATGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAATGCAGAATTAGAGAAGGTTTTTGTTTCTAAACATAAAGTCATGG  500

seq1  TGAAACGAAACAATATTGGAGGGAACCCTTACAAATGTAGTGAATTTCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACGAAACAATATTGGAGGGAACCCTTACAAATGTAGTGAATTTCAC  550

seq1  AAATATCTTACCCAGAGAGAAAAACTACAAAGTCAGCAGAGAATTTATCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTACCCAGAGAGAAAAACTACAAAGTCAGCAGAGAATTTATCA  600

seq1  TGGAAAGAAACCTTACGAAAGTAGTAAAAGTGACAAATGCCTTACCCATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAAACCTTACGAAAGTAGTAAAAGTGACAAATGCCTTACCCATC  650

seq1  AGATCCATCTTAGTATTCATCAGGGAATTCATACAGAAGAGATAATTTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCATCTTAGTATTCATCAGGGAATTCATACAGAAGAGATAATTTAC  700

seq1  AAATGTAGTGAATGTGACAAATGTTTTAAACACAAATTCAATCTTACTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGTGAATGTGACAAATGTTTTAAACACAAATTCAATCTTACTAT  750

seq1  GCATCAGAGAATTCATAAAGGAGAGACACCTCACAAATGTAGTCAATGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGAGAATTCATAAAGGAGAGACACCTCACAAATGTAGTCAATGTG  800

seq1  ACAAATGCTTTACCCACAACTTTAATTTGAGAATCCATCAGAGAATTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCTTTACCCACAACTTTAATTTGAGAATCCATCAGAGAATTC  848