BAC Information

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BAC

Clone NameB6Ng01-281L14
Chromosome4 (Build37)
Map Location 71,016,819 - 71,139,407
singlet/doubletdoublet
Overlap geneLOC100039979
Upstream geneCdk5rap2, Megf9, LOC100039565
Downstream geneLOC667638, EG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281L14.bB6Ng01-281L14.g
ACCGA081128GA081129
length1,1621,170
definitionB6Ng01-281L14.b B6Ng01-281L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,016,819 - 71,017,988)(71,138,247 - 71,139,407)
sequence
gaattctttcatctatatgagaattgttggcaatcaggaacatccctgga
cagctagaattgacttcacaacaatcaagcttctttacagccagatctca
agaaaccaatgccaagacacattacttctagcaactgaagaagtgacagc
attacttctttgtctatctctttgcacaggcaccatgagcccaataaaac
ccttattcatcctgcccttttctctcttttcttctccctttggaagagat
ggcctctattttccatcccaataaacatcccatgggagacctgcttcatg
gcataagttgttgagacctactaggtagttctctcaaggatgctcactgt
tgttatcattgtgcaggtcttgtttaaccagttattttgatgatatttca
caagtgcagcttccctgtcatatttagaagaccttgtctaccagggcctt
ctgctgagtctaatgttgaaacactagagggtgtaaattatgtctttagc
tgtcttcagtagcaggaaatgataatggtgctagtagtaatcatggtata
cctttatgcaaacaaagaaatgtattggtaccaatcataaactttggtca
ggaggggcatctggggacatactcaccgtgtggcctggatgaaaatgtat
gcagtgttatccaaagtttattgaaacttatcttgaacaaaaatgctgta
acaagtgtttgaaacttttatgacttggtagtgccttctagagagtcata
agcaagcagatatgtttttcagttacttaataaccacatgatatcagaaa
agtttaaagcagcagggcaatcaggaaggtagtctttgcagtaatctagc
tgataatcattccccaaggaagtcattgcatcatggaaatggtataacat
ctattgagaaatttacataatgctggtttgttcagcagaaacaaatggga
taagaaggttttttaccattaaagtttgtcattaagagtaccataagagt
ttatgtgtcttattattgacaaactctactgagtatgtgatgggggcctc
taatttacttataccttttctattcgatgaggaatcttctgaagttttat
gcagacgaaactaccaggtggtgtagatgaatatatggcttcaccctact
tagcgtgctggt

gaattctatgtccttaataaaggctgaaggcgcattcataactatgtatg
aaaacttcacaaacttgctcaacttctgaaagattatttatctttataag
gttctacgctcttttgtgaatgcttttagctttctcctcttattaagatg
gaagacatgtactaccttccaatcatctcaactgacatgctgataacatt
tacatatcgagtaaatagtgggatttttccacattaatctgtcttttatt
agttaaatttggagactgaattaaacctttagagaaaaggggatatttgg
ctttgtatgtgttttcaataccactattccttaaatttagaatgacaata
tatattctgtgtcattatatgtcccaagtatgtaacttgatgtttttttt
atatttacatggggtcacaattaagagattgctttgagtctcagaagata
attttggcttttgaatactattgagactgttcaatactatgggtactttt
gtaatatacgttgtattttaagacagttatgagtgtatgggtatttttgt
tgggcagtgtctctaggaatggaatgtgataatttgaatgaaaatatacc
ccacaggcttggtatctaaacactttctcttgacagttgatgttgttgct
ggaaactttagagccttgcaggaggcagtgaaatactggaactggacttc
aagaacaatagccttgttccccttcccatttgctatctgcttcttcttca
tgtcattatttattactttctgattgaatatagatgatctcagcttcctt
ccactatgctcctcccaccatgcctgacacttgctgccatgcatgccttc
tctgccatcatagagccttatcctctggaactatacatcaaagctaacat
tttcatctctacattgttttgagttgtgggaattttatcacaatagaaaa
ataactattacaccatcatactataatattttctaaaacaaaatattagg
atgtacccatttttttaaaaacaacttcaattattttagaaccttcacgg
ggaaaagtcatgtaatttttttactttctgaacattattctgcttttctg
gcctcatgtttctatacctctgaatctctcatattaacctatacaggcat
gaactggactaggttttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_71016819_71017988
seq2: B6Ng01-281L14.b_48_1209

seq1  GAATTCTTTCATCTATATGAGAATTGTTGGCAATCAGGAACATCCCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATCTATATGAGAATTGTTGGCAATCAGGAACATCCCTGGA  50

seq1  CAGCTAGAATTGACTTCACAACAATCAAGCTTCTTTACAGCCAGATCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGAATTGACTTCACAACAATCAAGCTTCTTTACAGCCAGATCTCA  100

seq1  AGAAACCAATGCCAAGACACATTACTTCTAGCAACTGAAGAAGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCAATGCCAAGACACATTACTTCTAGCAACTGAAGAAGTGACAGC  150

seq1  ATTACTTCTTTGTCTATCTCTTTGCACAGGCACCATGAGCCCAATAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTCTTTGTCTATCTCTTTGCACAGGCACCATGAGCCCAATAAAAC  200

seq1  CCTTATTCATCCTGCCCTTTTCTCTCTTTTCTTCTCCCTTTGGAAGAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTCATCCTGCCCTTTTCTCTCTTTTCTTCTCCCTTTGGAAGAGAT  250

seq1  GGCCTCTATTTTCCATCCCAATAAACATCCCATGGGAGACCTGCTTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTATTTTCCATCCCAATAAACATCCCATGGGAGACCTGCTTCATG  300

seq1  GCATAAGTTGTTGAGACCTACTAGGTAGTTCTCTCAAGGATGCTCACTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGTTGTTGAGACCTACTAGGTAGTTCTCTCAAGGATGCTCACTGT  350

seq1  TGTTATCATTGTGCAGGTCTTGTTTAACCAGTTATTTTGATGATATTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCATTGTGCAGGTCTTGTTTAACCAGTTATTTTGATGATATTTCA  400

seq1  CAAGTGCAGCTTCCCTGTCATATTTAGAAGACCTTGTCTACCAGGGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCAGCTTCCCTGTCATATTTAGAAGACCTTGTCTACCAGGGCCTT  450

seq1  CTGCTGAGTCTAATGTTGAAACACTAGAGGGTGTAAATTATGTCTTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGTCTAATGTTGAAACACTAGAGGGTGTAAATTATGTCTTTAGC  500

seq1  TGTCTTCAGTAGCAGGAAATGATAATGGTGCTAGTAGTAATCATGGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAGTAGCAGGAAATGATAATGGTGCTAGTAGTAATCATGGTATA  550

seq1  CCTTTATGCAAACAAAGAAATGTATTGGTACCAATCATAAACTTTGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATGCAAACAAAGAAATGTATTGGTACCAATCATAAACTTTGGTCA  600

seq1  GGAGGGGCATCTGGGGACATACTCACCGTGTGGCCTGGATGAAAATGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGCATCTGGGGACATACTCACCGTGTGGCCTGGATGAAAATGTAT  650

seq1  GCAGTGTTATCCAAAGTTTATTGAAACTTATCTTGAACAAAAATGCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTTATCCAAAGTTTATTGAAACTTATCTTGAACAAAAATGCTGTA  700

seq1  ACAAGTGTTTGAAACTTTTATGACTTGGGTAGTGCCTTCTAGAGAGTCAT  750
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACAAGTGTTTGAAACTTTTATGACTT-GGTAGTGCCTTCTAGAGAGTCAT  749

seq1  AAGCAAGCAGATATGTTTTTCAGTTACTTAATAACCACATGATATCAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCAGATATGTTTTTCAGTTACTTAATAACCACATGATATCAGAA  799

seq1  AAGTTTAAAGCAGCAGGGCAATCAGGAAGGTAGTCTTTGCAGTAATCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAAAGCAGCAGGGCAATCAGGAAGGTAGTCTTTGCAGTAATCTAG  849

seq1  CTGATAATCATTCCCCAAGGAAGTCATTGCATCATGG-AATGGTATAACA  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGATAATCATTCCCCAAGGAAGTCATTGCATCATGGAAATGGTATAACA  899

seq1  TCTATTGAGAAATTTACATAATGCTGGTTTGTTCAGCAGAAACAAATGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGAGAAATTTACATAATGCTGGTTTGTTCAGCAGAAACAAATGGG  949

seq1  ATAAGAAGGTTTTTTACCATTAAAGTTTGTCATTAAGAGTACCATAAGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAGGTTTTTTACCATTAAAGTTTGTCATTAAGAGTACCATAAGAG  999

seq1  TTTTAATGTGTCTTATTATTGACAAACTCTACTGAAGTATGTGATGGGGG  1049
      |||  ||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTT--ATGTGTCTTATTATTGACAAACTCTACTG-AGTATGTGATGGGGG  1046

seq1  CCTCTAATTTAACTTATTACCTTTCTA-TCGATGAGGAATC-TCTGAAGG  1097
      |||||||||| ||||||  | |||||| ||||||||||||| |||||| |
seq2  CCTCTAATTT-ACTTATACCTTTTCTATTCGATGAGGAATCTTCTGAA-G  1094

seq1  TTTTATGGCCAGAAGGAAACTAACCAGGTGTGGTAAGAATGATATATGGT  1147
      |||||||  ||| | |||||| ||||||||  || |||   |||||||| 
seq2  TTTTATG--CAG-ACGAAACT-ACCAGGTGGTGT-AGATGAATATATGGC  1139

seq1  TTCACCCTACTTAGGCTGCTGGT  1170
      ||||||||||||||  |||||||
seq2  TTCACCCTACTTAGCGTGCTGGT  1162


seq1: chr4_71138247_71139407
seq2: B6Ng01-281L14.g_69_1238 (reverse)

seq1  TGGAAAACCTAGT-CAG-TCAT-ACTGTTTATAGTTATATG-GAGA-TCA  45
      ||||||||||||| ||| ||||  |||| ||   | ||||| |||| |||
seq2  TGGAAAACCTAGTCCAGTTCATGCCTGTATAGGTTAATATGAGAGATTCA  50

seq1  GA-GTATAG-AACATGAAGCCAGAAAAGCAG-ATAATGTTCAGAAAGTAA  92
      || |||||| ||||||| ||||||||||||| ||||||||||||||||||
seq2  GAGGTATAGAAACATGAGGCCAGAAAAGCAGAATAATGTTCAGAAAGTAA  100

seq1  AAAAATTACATGACTTTTCCCCCTGAA-GTTCTAAAATAATTGAAGTTGT  141
      |||||||||||||||||||||| |||| ||||||||||||||||||||| 
seq2  AAAAATTACATGACTTTTCCCCGTGAAGGTTCTAAAATAATTGAAGTTG-  149

seq1  TTTTTAAAAAAATGGGTAACATCCTAAATATTTTGTTTTAG-AAATATTA  190
      ||||||||||||||||| ||||||| ||||||||||||||| ||||||||
seq2  TTTTTAAAAAAATGGGT-ACATCCT-AATATTTTGTTTTAGAAAATATTA  197

seq1  TAGTATGATGGTGTAATAGTTATTTTTCTATTGTGATAAAATT-CCACAA  239
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGTATGATGGTGTAATAGTTATTTTTCTATTGTGATAAAATTCCCACAA  247

seq1  CTCAAAACAATGTAGAGATGAAAATGTTAGCTTTGATGTATAGTTCCAGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACAATGTAGAGATGAAAATGTTAGCTTTGATGTATAGTTCCAGA  297

seq1  GGATAAGGCTCTATGATGGCAGAG-AGGCATGCATGGCAGCAAGTGTCAG  338
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GGATAAGGCTCTATGATGGCAGAGAAGGCATGCATGGCAGCAAGTGTCAG  347

seq1  GCATGGTGGGAGGAGCATAGTGGAAGGAAGCTGAGATCATCTATATTCAA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGGGAGGAGCATAGTGGAAGGAAGCTGAGATCATCTATATTCAA  397

seq1  TCAGAAAGTAATAAATAATGACATGAAGAAGAAGCAGATAGCAAATGGGA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGTAATAAATAATGACATGAAGAAGAAGCAGATAGCAAATGGGA  447

seq1  AGGGGAACAAGGCTATTGTTCTTGAAGTCCAGTTCCAGTATTTCACTGCC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAACAAGGCTATTGTTCTTGAAGTCCAGTTCCAGTATTTCACTGCC  497

seq1  TCCTGCAAGGCTCTAAAGTTTCCAGCAACAACATCAACTGTCAAGAGAAA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAAGGCTCTAAAGTTTCCAGCAACAACATCAACTGTCAAGAGAAA  547

seq1  GTGTTTAGATACCAAGCCTGTGGGGTATATTTTCATTCAAATTATCACAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGATACCAAGCCTGTGGGGTATATTTTCATTCAAATTATCACAT  597

seq1  TCCATTCCTAGAGACACTGCCCAACAAAAATACCCATACACTCATAACTG  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCTAGAGACACTGCCCAACAAAAATACCCATACACTCATAACTG  647

seq1  TCTTAAAATACAACGTATATTACAAAAGTACCCATAGTATTGAACAGTCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAATACAACGTATATTACAAAAGTACCCATAGTATTGAACAGTCT  697

seq1  CAATAGTATTCAAAAGCCAAAATTATCTTCTGAGACTCAAAGCAATCTCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTATTCAAAAGCCAAAATTATCTTCTGAGACTCAAAGCAATCTCT  747

seq1  TAATTGTGACCCCATGTAAATATAAAAAAAACATCAAGTTACATACTTGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTGACCCCATGTAAATATAAAAAAAACATCAAGTTACATACTTGG  797

seq1  GACATATAATGACACAGAATATATATTGTCATTCTAAATTTAAGGAATAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATAATGACACAGAATATATATTGTCATTCTAAATTTAAGGAATAG  847

seq1  TGGTATTGAAAACACATACAAAGCCAAATATCCCCTTTTCTCTAAAGGTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTGAAAACACATACAAAGCCAAATATCCCCTTTTCTCTAAAGGTT  897

seq1  TAATTCAGTCTCCAAATTTAACTAATAAAAGACAGATTAATGTGGAAAAA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAGTCTCCAAATTTAACTAATAAAAGACAGATTAATGTGGAAAAA  947

seq1  TCCCACTATTTACTCGATATGTAAATGTTATCAGCATGTCAGTTGAGATG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTATTTACTCGATATGTAAATGTTATCAGCATGTCAGTTGAGATG  997

seq1  ATTGGAAGGTAGTACATGTCTTCCATCTTAATAAGAGGAGAAAGCTAAAA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGGTAGTACATGTCTTCCATCTTAATAAGAGGAGAAAGCTAAAA  1047

seq1  GCATTCACAAAAGAGCGTAGAACCTTATAAAGATAAATAATCTTTCAGAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCACAAAAGAGCGTAGAACCTTATAAAGATAAATAATCTTTCAGAA  1097

seq1  GTTGAGCAAGTTTGTGAAGTTTTCATACATAGTTATGAATGCGCCTTCAG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCAAGTTTGTGAAGTTTTCATACATAGTTATGAATGCGCCTTCAG  1147

seq1  CCTTTATTAAGGACATAGAATTC  1161
      |||||||||||||||||||||||
seq2  CCTTTATTAAGGACATAGAATTC  1170


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