BAC Information

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BAC

Clone NameB6Ng01-281P08
Chromosome4 (Build37)
Map Location 118,792,556 - 118,950,176
singlet/doubletdoublet
Overlap geneSlc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1
Upstream geneSt3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833
Downstream genePpih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281P08.bB6Ng01-281P08.g
ACCGA081300GA081301
length1,0711,041
definitionB6Ng01-281P08.b B6Ng01-281P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,949,112 - 118,950,176)(118,792,556 - 118,793,593)
sequence
gaattcctgggtaagattcacaggtgtgagtttaccgataacagacagtg
ttggttaaaacctaatgttgggggccgggtgtggtggcgcacgcctttaa
tcccagcactcgggaggtagaggcaggcggatttctaaattcgaggccag
cctggtctacagagtgagttccaggacagccagagctacacagagaaacc
ctgtctcaaaaaataaataaataaataaataaataaataaaacctattgt
tgattgtgtttaatatgctaatgaattttctaggtacaaccatgaatata
cgtgcatagaccctctttcaggtcattttacattaaaatagtaacagctg
agtcacctgagaaacatagaatctggtagtttcttagtccttaaagctag
gtgcctcagcattccagccaagaacctggaagtttcctggagagctctat
gtcttcagttcaaagtagaagcttgcaagtatgtcttgtggtattgggaa
aagaatcaagcagtagagcagagcagcagcaagaaggccccctctttatc
tggttactaccacaatttgggatgggacttcctatgatgataataataaa
atatgaaaatagtaaatgtgatcctaatctaactaggaaggagaatgacc
caggggctattatagaattgttctgcataccaagtctttctccaccccac
ccccctgagattgatttattattatacataagtacactgtagcacaccag
aagagggcgtcagatctcaattacaggtggttgtgagccaccatgtggtt
actgggaattgaactcaggacctctggaaaagcgctcagtgctcttaccc
tctgagccatctcgccagcccgcagaccaagcctggatgtgtgatagaaa
catacatccaggctggtatgttgatgaaaatgtgtgtcacagacatgttg
gcctactgaagttgatagtcaaggacataaaatggtgacagagaaattat
gtaatccaaaagggaactcagattgctgaatcatcaaaggctaaatattt
gaagaacatgcgttgggctgg
gaattcctattggctagactcaggccattgcccttggctttgaatccaga
gcctttcttccccatctgcactgtccctttcattcagtttggccttcctg
gtgagggagggaaggttggttcctcttcctcccacaatgtggggctacct
gaaatgtaagtatcactcctacctgggtagtgagaccttggaaagccaaa
ggctctctaactgcataaagaaaaacctgattgctctctctcctcagaga
agtctagaagtcagctgggcaggtttgggcacctgaggccaggaagtagc
caggtttcctgggagaaggacaaatgtgttgccaggagtcaggcgaggca
tatctgaacatgggaacctgccagcattgactttgctctgtagtactctg
ggcccagacatgcctgtaaccctgtggtttcttcctgcagaaggtgacgg
gccgcctcatgttggctgtgggaggagcagtgctcggatcactgcagttc
ggctataacactggtgtcatcaacgccccccagaaggtaagtgtgctatg
ccactccccatatataccatcacccacacacattcatggtgccacctcgg
tgtccatcattgacatcaactgaccatcttccctcccagctggaattcta
gaatcccagggccatagaatggtgctactgtggtaggctgtcttgactgt
ttcccaaacagcacagacatttacactgatcagtatagtggaatttcatt
tatatagtatttggggctcctgaaagctccacatctgttgctgggcaagt
tgggcaggcagtgggggaaatggttcagagaagaggagccttccccagtg
ccaccctgtcgtgcagtttttatgttctcacacgccagccacttacagca
tagtccagtttccagactgtaacggctttcctgtccctggaggtcccagg
tcaatttaagttaaacatgcatctcacccttgaaggtgctgcagagctcg
gcctgcttcctctcccattgcacacctcagattctgccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_118949112_118950176
seq2: B6Ng01-281P08.b_47_1117 (reverse)

seq1  CCAGCCCACCGCAATGTTCT--CAATATTT-GGCTTTGATGATTCAGC-A  46
      |||||||| ||| |||||||   ||||||| | ||||||||||||||| |
seq2  CCAGCCCAACGC-ATGTTCTTCAAATATTTAGCCTTTGATGATTCAGCAA  49

seq1  TCTGAGTTCCCTTTTGGATTACAT-ATTTCTCTGGTCACCA-TTTATGTC  94
      |||||||||||||||||||||||| |||||||| ||||||| ||||||||
seq2  TCTGAGTTCCCTTTTGGATTACATAATTTCTCT-GTCACCATTTTATGTC  98

seq1  CTTGACTATCAACTTCAGTAG--CCACATGTCTGTGACACACATTTTCAT  142
      |||||||||||||||||||||  | |||||||||||||||||||||||||
seq2  CTTGACTATCAACTTCAGTAGGCCAACATGTCTGTGACACACATTTTCAT  148

seq1  CAACATACCAGCCTGGATGTATGTTTCTATCACACATCCAGGCTTGGTCT  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATACCAGCCTGGATGTATGTTTCTATCACACATCCAGGCTTGGTCT  198

seq1  GCGGGCTGGCGAGATGGCTCAGAGGGTAAGAGCACTGAGCGCTTTTCCAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGCTGGCGAGATGGCTCAGAGGGTAAGAGCACTGAGCGCTTTTCCAG  248

seq1  AGGTCCTGAGTTCAATTCCCAGTAACCACATGGTGGCTCACAACCACCTG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTGAGTTCAATTCCCAGTAACCACATGGTGGCTCACAACCACCTG  298

seq1  TAATTGAGATCTGACGCCCTCTTCTGGTGTGCTACAGTGTACTTATGTAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAGATCTGACGCCCTCTTCTGGTGTGCTACAGTGTACTTATGTAT  348

seq1  AATAATAAATCAATCTCAGGGGGGTGGGGTGGAGAAAGACTTGGTATGCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAATCAATCTCAGGGGGGTGGGGTGGAGAAAGACTTGGTATGCA  398

seq1  GAACAATTCTATAATAGCCCCTGGGTCATTCTCCTTCCTAGTTAGATTAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATTCTATAATAGCCCCTGGGTCATTCTCCTTCCTAGTTAGATTAG  448

seq1  GATCACATTTACTATTTTCATATTTTATTATTATCATCATAGGAAGTCCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACATTTACTATTTTCATATTTTATTATTATCATCATAGGAAGTCCC  498

seq1  ATCCCAAATTGTGGTAGTAACCAGATAAAGAGGGGGCCTTCTTGCTGCTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAATTGTGGTAGTAACCAGATAAAGAGGGGGCCTTCTTGCTGCTG  548

seq1  CTCTGCTCTACTGCTTGATTCTTTTCCCAATACCACAAGACATACTTGCA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTCTACTGCTTGATTCTTTTCCCAATACCACAAGACATACTTGCA  598

seq1  AGCTTCTACTTTGAACTGAAGACATAGAGCTCTCCAGGAAACTTCCAGGT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTACTTTGAACTGAAGACATAGAGCTCTCCAGGAAACTTCCAGGT  648

seq1  TCTTGGCTGGAATGCTGAGGCACCTAGCTTTAAGGACTAAGAAACTACCA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTGGAATGCTGAGGCACCTAGCTTTAAGGACTAAGAAACTACCA  698

seq1  GATTCTATGTTTCTCAGGTGACTCAGCTGTTACTATTTTAATGTAAAATG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTATGTTTCTCAGGTGACTCAGCTGTTACTATTTTAATGTAAAATG  748

seq1  ACCTGAAAGAGGGTCTATGCACGTATATTCATGGTTGTACCTAGAAAATT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAGAGGGTCTATGCACGTATATTCATGGTTGTACCTAGAAAATT  798

seq1  CATTAGCATATTAAACACAATCAACAATAGGTTTTATTTATTTATTTATT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCATATTAAACACAATCAACAATAGGTTTTATTTATTTATTTATT  848

seq1  TATTTATTTATTTTTTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTTTTTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCC  898

seq1  TGGAACTCACTCTGTAGACCAGGCTGGCCTCGAATTTAGAAATCCGCCTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACTCTGTAGACCAGGCTGGCCTCGAATTTAGAAATCCGCCTG  948

seq1  CCTCTACCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACACCCGGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACACCCGGC  998

seq1  CCCCAACATTAGGTTTTAACCAACACTGTCTGTTATCGGTAAACTCACAC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACATTAGGTTTTAACCAACACTGTCTGTTATCGGTAAACTCACAC  1048

seq1  CTGTGAATCTTACCCAGGAATTC  1065
      |||||||||||||||||||||||
seq2  CTGTGAATCTTACCCAGGAATTC  1071

seq1: chr4_118792556_118793593
seq2: B6Ng01-281P08.g_67_1107

seq1  GAATTCCTATTGGCTAGACTCAGGCCATTGCCCTTGGCTTTGAATCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTGGCTAGACTCAGGCCATTGCCCTTGGCTTTGAATCCAGA  50

seq1  GCCTTTCTTCCCCATCTGCACTGTCCCTTTCATTCAGTTTGGCCTTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTTCCCCATCTGCACTGTCCCTTTCATTCAGTTTGGCCTTCCTG  100

seq1  GTGAGGGAGGGAAGGTTGGTTCCTCTTCCTCCCACAATGTGGGGCTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGAGGGAAGGTTGGTTCCTCTTCCTCCCACAATGTGGGGCTACCT  150

seq1  GAAATGTAAGTATCACTCCTACCTGGGTAGTGAGACCTTGGAAAGCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAAGTATCACTCCTACCTGGGTAGTGAGACCTTGGAAAGCCAAA  200

seq1  GGCTCTCTAACTGCATAAAGAAAAACCTGATTGCTCTCTCTCCTCAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTAACTGCATAAAGAAAAACCTGATTGCTCTCTCTCCTCAGAGA  250

seq1  AGTCTAGAAGTCAGCTGGGCAGGTTTGGGCACCTGAGGCCAGGAAGTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGAAGTCAGCTGGGCAGGTTTGGGCACCTGAGGCCAGGAAGTAGC  300

seq1  CAGGTTTCCTGGGAGAAGGACAAATGTGTTGCCAGGAGTCAGGCGAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTCCTGGGAGAAGGACAAATGTGTTGCCAGGAGTCAGGCGAGGCA  350

seq1  TATCTGAACATGGGAACCTGCCAGCATTGACTTTGCTCTGTAGTACTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAACATGGGAACCTGCCAGCATTGACTTTGCTCTGTAGTACTCTG  400

seq1  GGCCCAGACATGCCTGTAACCCTGTGGTTTCTTCCTGCAGAAGGTGACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGACATGCCTGTAACCCTGTGGTTTCTTCCTGCAGAAGGTGACGG  450

seq1  GCCGCCTCATGTTGGCTGTGGGAGGAGCAGTGCTCGGATCACTGCAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCTCATGTTGGCTGTGGGAGGAGCAGTGCTCGGATCACTGCAGTTC  500

seq1  GGCTATAACACTGGTGTCATCAACGCCCCCCAGAAGGTAAGTGTGCTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAACACTGGTGTCATCAACGCCCCCCAGAAGGTAAGTGTGCTATG  550

seq1  CCACTCCCCATATATACCATCACCCACACACATTCATGGTGCCACCTCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCCCATATATACCATCACCCACACACATTCATGGTGCCACCTCGG  600

seq1  TGTCCATCATTGACATCAACTGACCATCTTCCCTCCCAGCTGGAATTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCATTGACATCAACTGACCATCTTCCCTCCCAGCTGGAATTCTA  650

seq1  GAATCCCAGGGCCATAGAATGGTGCTACTGTGGTAGGCTGTCTTGACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCAGGGCCATAGAATGGTGCTACTGTGGTAGGCTGTCTTGACTGT  700

seq1  TTCCCAAACAGCACAGACATTTACACTGATCAGTATAGTGGAATTTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAACAGCACAGACATTTACACTGATCAGTATAGTGGAATTTCATT  750

seq1  TATATAGTATTTGGGGCTCCTGAAAGCTCCACATCTGTTGCTGGGCAAG-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATATAGTATTTGGGGCTCCTGAAAGCTCCACATCTGTTGCTGGGCAAGT  800

seq1  TGGGCAGGCAGTGGGGGAAATGG-TCAGAGAAGAGGAGCCTTCCCCAGTG  848
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGGCAGGCAGTGGGGGAAATGGTTCAGAGAAGAGGAGCCTTCCCCAGTG  850

seq1  CCACCCTGTCGTGCAGTTTTTATGTTCTCACACGCCAGCCACTTACAGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCTGTCGTGCAGTTTTTATGTTCTCACACGCCAGCCACTTACAGCA  900

seq1  TAGTCCAG-TTCCAGACTGTAACGGC-TTCCTGTCCCTGGAGGTCCCAGG  946
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  TAGTCCAGTTTCCAGACTGTAACGGCTTTCCTGTCCCTGGAGGTCCCAGG  950

seq1  TCAATTTAAG-TAAACATGGCATCTCACCCT--GAGGTGCTGCAGGAGCT  993
      |||||||||| ||||||| ||||||||||||   |||||||||| |||||
seq2  TCAATTTAAGTTAAACAT-GCATCTCACCCTTGAAGGTGCTGCA-GAGCT  998

seq1  CGGCCTGGCTTCCTTCTCCCCATTGCACACCTCAGA-TCTGCCCCC  1038
      |||||| |||||| ||| |||||||||||||||||| |||||||||
seq2  CGGCCT-GCTTCC-TCT-CCCATTGCACACCTCAGATTCTGCCCCC  1041