BAC Information

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BAC

Clone NameB6Ng01-281P17
Chromosome4 (Build37)12 (Build37)
Map Location 82,977,681 - 82,978,5858,561,325 - 8,561,386
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNfib, Zdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik
Downstream geneSnapc3, Psip1, LOC100040611, 4930473A06Rik, LOC668010, Bnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281P17.bB6Ng01-281P17.g
ACCGA081318GA081319
length901131
definitionB6Ng01-281P17.b B6Ng01-281P17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,977,681 - 82,978,585)(8,561,325 - 8,561,386)
sequence
gaattctttctctgttctattatggcttctctgatatctctgccctcata
ggctgggaccccttaccatccccaactacaaatatttcccacattctgaa
aaatcacactttcatcttttaaaagacatccttgtggcaatagttacaac
aaatctttgattatctcctttctttccttcttcctccttcttcttcttcc
ttcttcttccttcttcttcctccttcttcctccttcctcttcttcttcat
ctttattttagatttatttattttatttgtctggtcttttgcatgtctgc
ctctttgtgcatgctggcacctgagaaggtcagaatagggtgtcagatcc
cccccggaactgaacttactggtgtttgtaaggtaccatgtgggtcctag
gaactgaacccaggccctctgcaggagcagccagtgctcttaaccactga
gccatctcgccagcccgttgtttgatttttttgattcaggatcttgtttt
gtagcccagggtagccaaaacttgtgatcctcttgatttgacctcccaaa
tcttagtggtgtgtgttactaacacactagtctcagctttcagcgagtct
aacttaattaggggtgccaggcaatcaatggttaccaaagccactggctt
caaagctctttgtctcattcccaaaagaaacaggaaatgtggacaagagt
gagaaaggtgagtgaaactatattaagaaaactaaggccgggcatggtgg
cacatgcctttaatcccagcactcgggagcagaggcaggcggatttctga
gttcgaggccagtctggtctacagagtgagttcccaggacagtcaggact
atacagagtaccctgtctcaaatgaaaaaactagacttaagagttgtcaa
a

catgttgtgatgtgcacctgaagtccataaggctgaggcaggaggatcag
aaaaaaagaaagaaagaaagaaagaaaaaagaaataaggaaggaaagaaa
gatagggagagagagaaaggaaggaaggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_82977681_82978585
seq2: B6Ng01-281P17.b_45_945

seq1  GAATTCTTTCTCTGTTCTATTATGGCTTCTCTGATATCTCTGCCCTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCTGTTCTATTATGGCTTCTCTGATATCTCTGCCCTCATA  50

seq1  GGCTGGGACCCCTTACCATCCCCAACTACAAATATTTCCCACATTCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGACCCCTTACCATCCCCAACTACAAATATTTCCCACATTCTGAA  100

seq1  AAATCACACTTTCATCTTTTAAAAGACATCCTTGTGGCAATAGTTACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACACTTTCATCTTTTAAAAGACATCCTTGTGGCAATAGTTACAAC  150

seq1  AAATCTTTGATTATCTCCTTTCTTTCCTTCTTCCTCCTTCTTCTTCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTGATTATCTCCTTTCTTTCCTTCTTCCTCCTTCTTCTTCTTCC  200

seq1  TTCTTCTTCCTTCTTCTTCCTCCTTCTTCCTCCTTCCTCTTCTTCTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCCTTCTTCTTCCTCCTTCTTCCTCCTTCCTCTTCTTCTTCAT  250

seq1  CTTTATTTTAGATTTATTTATTTTATTTGTCTGGTCTTTTGCATGTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTAGATTTATTTATTTTATTTGTCTGGTCTTTTGCATGTCTGC  300

seq1  CTCTTTGTGCATGCTGGCACCTGAGAAGGTCAGAATAGGGTGTCAGATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTGCATGCTGGCACCTGAGAAGGTCAGAATAGGGTGTCAGATCC  350

seq1  CCCCCGGAACTGAACTTACTGGTGTTTGTAAGGTACCATGTGGGTCCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCGGAACTGAACTTACTGGTGTTTGTAAGGTACCATGTGGGTCCTAG  400

seq1  GAACTGAACCCAGGCCCTCTGCAGGAGCAGCCAGTGCTCTTAACCACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAACCCAGGCCCTCTGCAGGAGCAGCCAGTGCTCTTAACCACTGA  450

seq1  GCCATCTCGCCAGCCCGTTGTTTGATTTTTTTGATTCAGGATCTTGTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCGCCAGCCCGTTGTTTGATTTTTTTGATTCAGGATCTTGTTTT  500

seq1  GTAGCCCAGGGTAGCCAAAACTTGTGATCCTCTTGATTTGACCTCCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCAGGGTAGCCAAAACTTGTGATCCTCTTGATTTGACCTCCCAAA  550

seq1  TCTTAGTGGTGTGTGTTACTAACACACTAGTCTCAGCTTTCAGCGAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTGGTGTGTGTTACTAACACACTAGTCTCAGCTTTCAGCGAGTCT  600

seq1  AACTTAATTA-GGGTGCCAGGCAATCAATGGTTACCAAAGCCACTGGCTT  649
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATTAGGGGTGCCAGGCAATCAATGGTTACCAAAGCCACTGGCTT  650

seq1  CAAAGCTCTTTGTCTCATTCCCAAAAGAAACAGGAAATGTGGACAAGAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTCTTTGTCTCATTCCCAAAAGAAACAGGAAATGTGGACAAGAGT  700

seq1  GAGAAAGGTGAGTGAAACTATATTAAGAAAACTAAGGCCGGGCATGGTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGTGAGTGAAACTATATTAAGAAAACTAAGGCCGGGCATGGTGG  750

seq1  CACATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTG  799
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CACATGCCTTTAATCCCAGCACTCGGGA-GCAGAGGCAGGCGGATTTCTG  799

seq1  AGTTCGAGGCCAGTCTGGTCTACAGAGTGAGTT-CCAGGACAGTCAGGAC  848
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTTCGAGGCCAGTCTGGTCTACAGAGTGAGTTCCCAGGACAGTCAGGAC  849

seq1  TATACAGAGTAACCCTGTCTCAAAAAAAAAAAAAAAACAAGAC-TAAGAG  897
      |||||||||| ||||||||||     |||  ||||||| |||| ||||||
seq2  TATACAGAGT-ACCCTGTCTC-----AAATGAAAAAACTAGACTTAAGAG  893

seq1  TTGTCAAA  905
      ||||||||
seq2  TTGTCAAA  901


seq1: chr12_8561325_8561386
seq2: B6Ng01-281P17.g_132_205 (reverse)

seq1  CTTCATTCCTTCCTTTCTTCCTC-------CTTTCTTTCCTT--TTCTTT  41
      |||| |||||||||||||  |||       ||||||||||||  || |||
seq2  CTTCCTTCCTTCCTTTCTCTCTCTCCCTATCTTTCTTTCCTTCCTTATTT  50

seq1  C---TTTCTTTCTTTCTTTCTTTC  62
      |   ||||||||||||||||||||
seq2  CTTTTTTCTTTCTTTCTTTCTTTC  74


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