BAC Information

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BAC

Clone NameB6Ng01-282D12
Chromosome4 (Build37)
Map Location 55,060,120 - 55,233,588
singlet/doubletdoublet
Overlap geneZfp462, LOC670211
Upstream geneLOC666901, LOC100041303, LOC384018, EG666920
Downstream geneRad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282D12.bB6Ng01-282D12.g
ACCGA081494GA081495
length1,107664
definitionB6Ng01-282D12.b B6Ng01-282D12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,232,486 - 55,233,588)(55,060,120 - 55,060,783)
sequence
gaattccactaacacccacactctttccccttctcacacccacttcattt
gctctggttcacaccccctctctatttcccatctgaattatacgggtgcc
ctgtaactgtgtggagagttctaccattctttgtgcatgaccagaatgcc
actttaaaaagccagtatcgtatcaaatttctgctaaaatcccccttttc
cacaaaagtattgtacagtgtctgtgttctttccaaggctgccatctcat
tccatgcacatctaccatactctctaagggtcatataaaggctgccccct
caagaaccatgcttctgtttctgatcgacaataatgactctgacgcccag
agggtgactccatggtagagctgtaccttgcatgtgcaaggcctgggatt
gatcctcacagctatagaacaaacaaacaagcaaacaaacaacaaccaca
aaactcgagtcattcctctcacttttattctcgtgacagtctcattaaat
aatttattcattatttctttgttttattctttctatgcctcattactcat
ttaatcgtggggcctgctataaatcatctttatgataggtgcggaggcaa
agtgagctgaataagataaacactaataagatgtcatgtggcatgtatta
tcatgtgtgtgtgtgtgttgtgtacatgttcatgtgcttatttttttgct
aatgtgtgtgactacacaggtatgcatgcacatgcattcatgtggtggtc
agaggtccacatcaggcgtcttcctccattacactccacttcagtttttg
aggcaggctctctcactgagcctggaactcagtggatttggctaggctag
ctggccaacaaacttcaggaatcttcctatcgccatgccctagagtgaca
gacatgtgtttcctcacccaggccttgtctatagtatattaaactggggt
tgccttagagtaacagaacatatagaataaatctatctatctatctatct
atctatctatctatctatctatctatccatccctctatctatcatcattt
atgtgtgtatacgtatttatatatacatatatatatacgtatatatacgg
atatata

gaattcactgtgtaaactaggctaactttgaactcatagcctgtccctgc
ctcttaactggtgcaagcagctcttcttggtctcagggctgcaatccatt
agctcactggaatcttctcttgcttagcaagccttcctttccgagatcag
tggattagaggacagtgctcagagagttacattatttacaaacacggggg
tggctgccggcacctgggagaaagccaagctctgaaaggtcccacaaagt
gggttgctgccctgggaactgttacagatgtgtcatagctgctgggattt
gcttttttttgtgtgagtttacttgccctaattttaaccaggacgggaga
gaaggtgctgagcgcgagaatgggtagcggcagctgtttcttttgcattg
ttgagtctagtttcttgaaatgttctgctgagacgtcttgcatttttcct
ttgagtttcatataacacacaaacttacgttttagaatttgggctgggtt
ttattttgcttttggtttgtttttatgatggctgggataacctgcagtag
agtctagaaacaacaacaaagagggttcaccaaaaggggccatgtttcta
cagggttctacctaatccgcaggtacgtgagtctgggttgggtgagtggc
aggggaggaaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_55232486_55233588
seq2: B6Ng01-282D12.b_47_1153 (reverse)

seq1  TATATAT--GTATATATATGTATATATATATGTATATATATATATGTATA  48
      |||||||  ||||||||| ||||||||||||||||||||| ||| |||||
seq2  TATATATCCGTATATATACGTATATATATATGTATATATAAATACGTATA  50

seq1  CACACATAAATGGATGATAGATAGAGGGATGGATAGATAGATAGATAGAT  98
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACACATAAAT-GATGATAGATAGAGGGATGGATAGATAGATAGATAGAT  99

seq1  AGATAGATAGATAGATAGATAGATAGATTTATTCTATATGTTCTGTTACT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATAGATTTATTCTATATGTTCTGTTACT  149

seq1  CT-AGGCAACCCCAG-TTAATATACTATAGACAAGG-CTGGGTGAGGAAA  195
      || |||||||||||| |||||||||||||||||||| |||||||||||||
seq2  CTAAGGCAACCCCAGTTTAATATACTATAGACAAGGCCTGGGTGAGGAAA  199

seq1  CACATGTCTGTCACTCTAGGGCATGGCGATAGGAAGATTCCTGAAGTTTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTCTGTCACTCTAGGGCATGGCGATAGGAAGATTCCTGAAGTTTG  249

seq1  TTGGCCAGCTAGCCTAGCCAAATCCACTGAGTTCCAGGCTCAGTGAGAGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCAGCTAGCCTAGCCAAATCCACTGAGTTCCAGGCTCAGTGAGAGA  299

seq1  GCCTGCCTCAAAAACTGAAGTGGAGTGTAATGGAGGAAGACGCCTGATGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTCAAAAACTGAAGTGGAGTGTAATGGAGGAAGACGCCTGATGT  349

seq1  GGACCTCTGACCACCACATGAATGCATGTGCATGCATACCTGTGTAGTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCTGACCACCACATGAATGCATGTGCATGCATACCTGTGTAGTCA  399

seq1  CACACATTAGCAAAAAAATAAGCACATGAACATGTACACAACACACACAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATTAGCAAAAAAATAAGCACATGAACATGTACACAACACACACAC  449

seq1  ACACATGATAATACATGCCACATGACATCTTATTAGTGTTTATCTTATTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGATAATACATGCCACATGACATCTTATTAGTGTTTATCTTATTC  499

seq1  AGCTCACTTTGCCTCCGCACCTATCATAAAGATGATTTATAGCAGGCCCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACTTTGCCTCCGCACCTATCATAAAGATGATTTATAGCAGGCCCC  549

seq1  ACGATTAAATGAGTAATGAGGCATAGAAAGAATAAAACAAAGAAATAATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTAAATGAGTAATGAGGCATAGAAAGAATAAAACAAAGAAATAATG  599

seq1  AATAAATTATTTAATGAGACTGTCACGAGAATAAAAGTGAGAGGAATGAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTATTTAATGAGACTGTCACGAGAATAAAAGTGAGAGGAATGAC  649

seq1  TCGAGTTTTGTGGTTGTTGTTTGTTTGCTTGTTTGTTTGTTCTATAGCTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTTTTGTGGTTGTTGTTTGTTTGCTTGTTTGTTTGTTCTATAGCTG  699

seq1  TGAGGATCAATCCCAGGCCTTGCACATGCAAGGTACAGCTCTACCATGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATCAATCCCAGGCCTTGCACATGCAAGGTACAGCTCTACCATGGA  749

seq1  GTCACCCTCTGGGCGTCAGAGTCATTATTGTCGATCAGAAACAGAAGCAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCTCTGGGCGTCAGAGTCATTATTGTCGATCAGAAACAGAAGCAT  799

seq1  GGTTCTTGAGGGGGCAGCCTTTATATGACCCTTAGAGAGTATGGTAGATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTGAGGGGGCAGCCTTTATATGACCCTTAGAGAGTATGGTAGATG  849

seq1  TGCATGGAATGAGATGGCAGCCTTGGAAAGAACACAGACACTGTACAATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGAATGAGATGGCAGCCTTGGAAAGAACACAGACACTGTACAATA  899

seq1  CTTTTGTGGAAAAGGGGGATTTTAGCAGAAATTTGATACGATACTGGCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGGAAAAGGGGGATTTTAGCAGAAATTTGATACGATACTGGCTT  949

seq1  TTTAAAGTGGCATTCTGGTCATGCACAAAGAATGGTAGAACTCTCCACAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTGGCATTCTGGTCATGCACAAAGAATGGTAGAACTCTCCACAC  999

seq1  AGTTACAGGGCACCCGTATAATTCAGATGGGAAATAGAGAGGGGGTGTGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAGGGCACCCGTATAATTCAGATGGGAAATAGAGAGGGGGTGTGA  1049

seq1  ACCAGAGCAAATGAAGTGGGTGTGAGAAGGGGAAAGAGTGTGGGTGTTAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGCAAATGAAGTGGGTGTGAGAAGGGGAAAGAGTGTGGGTGTTAG  1099

seq1  TGGAATTC  1103
      ||||||||
seq2  TGGAATTC  1107


seq1: chr4_55060120_55060783
seq2: B6Ng01-282D12.g_70_733

seq1  GAATTCACTGTGTAAACTAGGCTAACTTTGAACTCATAGCCTGTCCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGTAAACTAGGCTAACTTTGAACTCATAGCCTGTCCCTGC  50

seq1  CTCTTAACTGGTGCAAGCAGCTCTTCTTGGTCTCAGGGCTGCAATCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAACTGGTGCAAGCAGCTCTTCTTGGTCTCAGGGCTGCAATCCATT  100

seq1  AGCTCACTGGAATCTTCTCTTGCTTAGCAAGCCTTCCTTTCCGAGATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACTGGAATCTTCTCTTGCTTAGCAAGCCTTCCTTTCCGAGATCAG  150

seq1  TGGATTAGAGGACAGTGCTCAGAGAGTTACATTATTTACAAACACGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTAGAGGACAGTGCTCAGAGAGTTACATTATTTACAAACACGGGGG  200

seq1  TGGCTGCCGGCACCTGGGAGAAAGCCAAGCTCTGAAAGGTCCCACAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCGGCACCTGGGAGAAAGCCAAGCTCTGAAAGGTCCCACAAAGT  250

seq1  GGGTTGCTGCCCTGGGAACTGTTACAGATGTGTCATAGCTGCTGGGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCTGCCCTGGGAACTGTTACAGATGTGTCATAGCTGCTGGGATTT  300

seq1  GCTTTTTTTTGTGTGAGTTTACTTGCCCTAATTTTAACCAGGACGGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTTTGTGTGAGTTTACTTGCCCTAATTTTAACCAGGACGGGAGA  350

seq1  GAAGGTGCTGAGCGCGAGAATGGGTAGCGGCAGCTGTTTCTTTTGCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGCTGAGCGCGAGAATGGGTAGCGGCAGCTGTTTCTTTTGCATTG  400

seq1  TTGAGTCTAGTTTCTTGAAATGTTCTGCTGAGACGTCTTGCATTTTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTCTAGTTTCTTGAAATGTTCTGCTGAGACGTCTTGCATTTTTCCT  450

seq1  TTGAGTTTCATATAACACACAAACTTACGTTTTAGAATTTGGGCTGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTCATATAACACACAAACTTACGTTTTAGAATTTGGGCTGGGTT  500

seq1  TTATTTTGCTTTTGGTTTGTTTTTATGATGGCTGGGATAACCTGCAGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGCTTTTGGTTTGTTTTTATGATGGCTGGGATAACCTGCAGTAG  550

seq1  AGTCTAGAAACAACAACAAAGAGGGTTCACCAAAAGGGGCCATGTTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGAAACAACAACAAAGAGGGTTCACCAAAAGGGGCCATGTTTCTA  600

seq1  CAGGGTTCTACCTAATCCGCAGGTACGTGAGTCTGGGTTGGGTGAGTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTCTACCTAATCCGCAGGTACGTGAGTCTGGGTTGGGTGAGTGGC  650

seq1  AGGGGAGGAAAGGG  664
      ||||||||||||||
seq2  AGGGGAGGAAAGGG  664


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