BAC Information

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BAC

Clone NameB6Ng01-282D14
Chromosome4 (Build37)14 (Build37)
Map Location 95,797,991 - 95,799,17644,832,672 - 44,833,041
singlet/doubletsingletsinglet
Overlap geneLOC242546
Upstream geneLOC100042411, 2310009E04Rik, Hook1, Cyp2j13
Downstream geneLOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282D14.bB6Ng01-282D14.g
ACCGA081498GA081499
length1,182953
definitionB6Ng01-282D14.b B6Ng01-282D14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,797,991 - 95,799,176)(44,832,672 - 44,833,041)
sequence
gaattcataagattcttaggcaaatggatgcatccgcaggatatcatact
gagtgaagtaaccccatcacaaaagaacacacatgacatgcactcactga
taagcagatattagcccagaaacttagaatacccaaggtacaatttgcaa
aacacatgaaactcaagaagtaggaagaccaaagtgcagaattataggtt
ttagtaaagatgacaaaataacttaagaaattaagaaggatgagtattca
tcacagacatacaaatacacacacacacacacacacacacacacacacct
tttgcagttacatgaatttagtggcattaaatctatcaccatcagtctaa
cctactatcatttttgttcctagagtgttcaaatctcttaaaatgataat
atcttggctatcattcctctgttctctacctgccttcataaatgagcctc
aaaacgtgtcatgtttggtcttcttctctattttgcaccactcaagagct
tctttcgctgttatggtgagaaatgaagaactgggctccttagtgccaat
ctcagcagtgttatgtccactttaaggttttcttcaggtaacatacttta
tatattggatactttgcagtttaagactcttgatttcttattcatcacat
catggatattctcttcctattgaatatttttcaaactattaaatgcatac
cattagttcaaaagcttttctttaaatgtaagccaacctgtatgtcttta
ataaaactttgtaccagtagcatgatggtattttattcaggatagctaat
tgattcagatgtccttgttcaatgaattgccacaaaatgacactgacttt
tatctattttgtgcactattaatcatttaagaccatggctgtgcttctca
tagcagatcatatacagcagccaatgatgtacaattaatggtcaactgtt
tcaaggagtatttaggaaattgctaaatgtgaagcctttttaggttaaag
agttgaaatctgtattcaattttcaagcacataaccagatttaatgattg
tttatgcactctgccagtctaacattatttgtagtctagtgagcccttct
ggtggtataggtctatgatgcaattttagagccctagccagagcagcagc
aggagaggttgccctccacaatccgtttttat

gaattcctaatttgattcaaataattttactaagaaagtttaaggagatg
ggtttagtcattttatcagaaagatctaataattttaaaatcaagaatat
tacccctccttatagaataggaaataaaggatgcataataagcaatacaa
tgagattttataaattacactaagacaaaatagacttgagattcatttgt
gatcaaggaaaaacattcattctaagtcaggtccaaagatgaggccacag
gtctgttctatgataaagcaagatgacctgaaactgttgatttgaactta
taatgagcttaaagaatgaaaggctgcatggaacttacatttggcattca
tctgtagctccacttttgcatagcattttatgtacaaggtaattttaaaa
aggaaattttgtctaagaaggtatgaattgtcagaaataagaaatgaagt
gtggctattggggctctgacccatttaccagatgtatatctgtctgtatg
tatgtacacttaagagttaaaagagttcacagtttctcacttgactattt
tgccagtcccaaatagttaggtttttttgtgtcagtagtgctgactctgt
aaattgcctaccactgacaacatgggtctcaatgctaatagcaaacactc
ccagtggccaacacaatacaacagttctgtaaataaattggtataacctg
tgatgtcatattcagctttttttttccttttttttaattaggtattttcc
tcatttacatttccaatgctatcccaaaagtaccccatacccccacacac
acactcccctacccacccactcccactttttggccctggcgttcccctgc
actggggcatataaagtttgcaagtccaatgggcctctctttccagtgat
ggccagctaggccatcttttgatacatatgcagttagagtcaagagctcc
agg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_95797991_95799176
seq2: B6Ng01-282D14.b_48_1229

seq1  GAATTCATAAGATTCTTAGGCAAATGGATGCATCCGCAGGATATCATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGATTCTTAGGCAAATGGATGCATCCGCAGGATATCATACT  50

seq1  GAGTGAAGTAACCCCATCACAAAAGAACACACATGACATGCACTCACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAGTAACCCCATCACAAAAGAACACACATGACATGCACTCACTGA  100

seq1  TAAGCAGATATTAGCCCAGAAACTTAGAATACCCAAGGTACAATTTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGATATTAGCCCAGAAACTTAGAATACCCAAGGTACAATTTGCAA  150

seq1  AACACATGAAACTCAAGAAGTAGGAAGACCAAAGTGCAGAATTATAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGAAACTCAAGAAGTAGGAAGACCAAAGTGCAGAATTATAGGTT  200

seq1  TTAGTAAAGATGACAAAATAACTTAAGAAATTAAGAAGGATGAGTATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAAAGATGACAAAATAACTTAAGAAATTAAGAAGGATGAGTATTCA  250

seq1  TCACAGACATACAAATACACACACACACACACACACACACACACACACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACATACAAATACACACACACACACACACACACACACACACACCT  300

seq1  TTTGCAGTTACATGAATTTAGTGGCATTAAATCTATCACCATCAGTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGTTACATGAATTTAGTGGCATTAAATCTATCACCATCAGTCTAA  350

seq1  CCTACTATCATTTTTGTTCCTAGAGTGTTCAAATCTCTTAAAATGATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTATCATTTTTGTTCCTAGAGTGTTCAAATCTCTTAAAATGATAAT  400

seq1  ATCTTGGCTATCATTCCTCTGTTCTCTACCTGCCTTCATAAATGAGCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGCTATCATTCCTCTGTTCTCTACCTGCCTTCATAAATGAGCCTC  450

seq1  AAAACGTGTCATGTTTGGTCTTCTTCTCTATTTTGCACCACTCAAGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGTGTCATGTTTGGTCTTCTTCTCTATTTTGCACCACTCAAGAGCT  500

seq1  TCTTTCGCTGTTATGGTGAGAAATGAAGAACTGGGCTCCTTAGTGCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCGCTGTTATGGTGAGAAATGAAGAACTGGGCTCCTTAGTGCCAAT  550

seq1  CTCAGCAGTGTTATGTCCACTTTAAGGTTTTCTTCAGGTAACATACTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGTGTTATGTCCACTTTAAGGTTTTCTTCAGGTAACATACTTTA  600

seq1  TATATTGGATACTTTGCAGTTTAAGACTCTTGATTTCTTATTCATCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGGATACTTTGCAGTTTAAGACTCTTGATTTCTTATTCATCACAT  650

seq1  CATGGATATTCTCTTCCTATTGAATATTTTTCAAACTATTAAATGCATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATATTCTCTTCCTATTGAATATTTTTCAAACTATTAAATGCATAC  700

seq1  CATTAGTTCAAAAGCTTTTCTTTAAATGTAAGCCAACCTGTATGTCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTTCAAAAGCTTTTCTTTAAATGTAAGCCAACCTGTATGTCTTTA  750

seq1  ATAAAACTTTGTACCAGTAGCATGATGGTATTTTATTCAGGATAGCTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTTTGTACCAGTAGCATGATGGTATTTTATTCAGGATAGCTAAT  800

seq1  TGATTCAGATGTCCTTGTTCAATGAATTGCCACAAAATGACACTGACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAGATGTCCTTGTTCAATGAATTGCCACAAAATGACACTGACTTT  850

seq1  TATCTATTTTGTGCACTATTAATCATTTAAGACCATGGCTGTGCTTCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATTTTGTGCACTATTAATCATTTAAGACCATGGCTGTGCTTCTCA  900

seq1  TAGCAGATCATATACAGCAGCCAATGATGTACAATTAATGGTCAACTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGATCATATACAGCAGCCAATGATGTACAATTAATGGTCAACTGTT  950

seq1  TCAAGGAGTATTTAGGAAATTGCTAAATGTGAAGCCTTTTTAGGTTAAAA  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCAAGGAGTATTTAGGAAATTGCTAAATGTGAAGCCTTTTTAGGTT-AAA  999

seq1  GAGTTGAAATCTGTATTCAATTTTCAAGCACATAACCAGATTTAATGATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAAATCTGTATTCAATTTTCAAGCACATAACCAGATTTAATGATT  1049

seq1  GTTTTATGCACTCTTGCCAGTCTAACAATATTTGGTAGTCTAGTGAGCCC  1100
      | ||||||||||| ||||||||||||| ||||| ||||||||||||||||
seq2  G-TTTATGCACTC-TGCCAGTCTAACATTATTT-GTAGTCTAGTGAGCCC  1096

seq1  -TCT-GTGGTATA-GTCTTAATGATGCATTTTAAGAAGCCATAAGCAAGA  1147
       ||| |||||||| ||||  |||||||| ||| || |||| | ||| |||
seq2  TTCTGGTGGTATAGGTCT--ATGATGCAATTTTAG-AGCCCT-AGCCAGA  1142

seq1  GCAGCAGCAAGGAAGAGGGTGCC--TCAC-ATCCGTTTTTAT  1186
      |||||||||  | ||||| ||||   ||| ||||||||||||
seq2  GCAGCAGCA--GGAGAGGTTGCCCTCCACAATCCGTTTTTAT  1182


seq1: chr14_44832672_44833041
seq2: B6Ng01-282D14.g_455_969 (reverse)

seq1  GGCCATCACTGGAAAGAGAGG-CCATTGGTCATGCAAACTTTAAACGCCC  49
      ||||||||||||||||||||| ||||||| | ||||||||||| | ||||
seq2  GGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCC  50

seq1  CAGTACAGGGGAACGCCAGGGGCAAAAATTGGGAGTGGGTGGGTAGGGGA  99
      |||| |||||||||||||||| |||||| |||||||||||||||||||||
seq2  CAGTGCAGGGGAACGCCAGGGCCAAAAAGTGGGAGTGGGTGGGTAGGGGA  100

seq1  GT-TGTG-GGGAGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAA  147
      || |||| | | |||||||||| |||||||||||||||||||||||||||
seq2  GTGTGTGTGTGGGGGTATGGGGTACTTTTGGGATAGCATTGGAAATGTAA  150

seq1  ATGAGGAAAATACCTAATTTAAAAAAA-TAGACACAAAGGGCAACAT---  193
      ||||||||||||||||||| |||||||  | | | ||||   || ||   
seq2  ATGAGGAAAATACCTAATTAAAAAAAAGGAAAAAAAAAGCTGAATATGAC  200

seq1  --------TTA----AAATTA-------AAATTTGGTTTTCTG-------  217
              |||    || |||       || | | || || ||       
seq2  ATCACAGGTTATACCAATTTATTTACAGAACTGTTGTATTGTGTTGGCCA  250

seq1  ---------------AAAAAAAAAAAGTACAA------GAGT----GGCA  242
                     |  |  |   ||  | |       |||    ||||
seq2  CTGGGAGTGTTTGCTATTAGCATTGAGACCCATGTTGTCAGTGGTAGGCA  300

seq1  ATT-------TCTGTACTTTGTAGAAAAATCAACAAAATT--------CT  277
      |||       || | |||    | | |||  |||  || |        ||
seq2  ATTTACAGAGTCAGCACTACTGACACAAAAAAACCTAACTATTTGGGACT  350

seq1  GCTTAAATTG--------GAAATATTG----CTTTTA-------------  302
      |   |||| |        ||||   ||    ||||||             
seq2  GGCAAAATAGTCAAGTGAGAAACTGTGAACTCTTTTAACTCTTAAGTGTA  400

seq1  -------------AGATTT---TTTTTTAAAT-------------ATTAG  323
                   |||| |   | |  |||||             | |||
seq2  CATACATACAGACAGATATACATCTGGTAAATGGGTCAGAGCCCCAATAG  450

seq1  ----ACCATGTTACTAATTT----CAA--CATAGGCTTTT--------TT  355
          ||    || || ||||    |||  ||||   | ||        ||
seq2  CCACACTTCATTTCTTATTTCTGACAATTCATACCTTCTTAGACAAAATT  500

seq1  TCCTTTTTAAAATTA  370
      |||||||||||||||
seq2  TCCTTTTTAAAATTA  515


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