BAC Information

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BAC

Clone NameB6Ng01-282N16
Chromosome4 (Build37)
Map Location 111,330,947 - 111,475,657
singlet/doubletdoublet
Overlap geneSpata6
Upstream geneLOC100040381, 2310026E23Rik
Downstream geneLOC621612, Slc5a9, LOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282N16.bB6Ng01-282N16.g
ACCGA081958GA081959
length1,1621,105
definitionB6Ng01-282N16.b B6Ng01-282N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,474,502 - 111,475,657)(111,330,947 - 111,332,049)
sequence
gaattcattggctaaaactgataaagtttttttaatctgtttatttaaaa
acatgatcaaagggttaccatcttatttcaatcttagagaaaatataatt
ttaattaatactataaataaaagcttctgcagatgtgttgctgacataca
aatcctagacaaaattccaatttttcccgggatatataatatacacttaa
cagcaatttatactgttttcatgacttcaatggattctgtaaacacctgc
aaatatatcgctaatgatatagaaaaaccaaacccaagactgccatttat
ttaaagagggctactgagtcctgaaaagaataaaacgtttgtgcctctaa
taatatgagctgaaaactagaagaatgcccttctttattaaatgcattga
aatagagctgttatacattggtaggaaaaaactatcacgcttaccataaa
cagtacattaataaaattttaactcatcttggtgagttcaaattcattca
ccatttattttcaatgcgccttactttcatccaatcatctaatcaaaagt
aaaacaggcaatgttgaatattaaagacactcactttgttttggcaaaaa
gcttatgcacacacatttattcatcaggaaacaagtgtcctaaacctcct
gaggtagacacaggtggatgagccaagtccatctacataacaattttcag
gtcacctggggttactgagtgtaatcaggtctcataaaacttgaggcagg
gtgaaagagaatgcaagtagtaatatttactctgaagttatttctcccac
tgggaatataactgaaaagttaattctaactatactccataaagaattca
cagacattcaaagttgtatatacagataaaataactttcccaagatcctg
tgctattgcagtatatgtagaattgaaaattgtacaaaatacatttaaaa
agatgaaaggccacaaaacaatatttacaaatattttacaatataagtaa
aagcattcttgaaaacctattacacacgacagtatcagaaacaaaaccac
agtaacatttaagaactatatttactgtatctgacatctaagcaaatgcc
aggaatcaggaaaagaatagttgaaaatcaagttcatcgacttcctcaga
aatcctcccttc

gaattcttagaatctcatttacaagttaatttagggattatctctttggg
gtcctctgtcagcctgcataaaaattatcttcatccttcaccactttttt
ctttgtaagtgttatgatcacagattcaatgaagtaatgcagtttggagg
ggacatccgtgagcatggcaggcaaggacaaggagaaccagggagcagaa
gcctcagagccagaattggagccagggcctgacccctctgtgggatgctc
agcctcagtcaagagaggtttgtccagattgagagggggcttgaaactga
gaaagatgaagggcagttttctttctaagagcctctgctttcaactgctc
agggcaccccaacactgagctttgaagtccttttcagcagacttctttcc
tcactaggccacaggaagacttaaggcaaatgcacccactcttaagttag
gaaaagcaaattagctccctaccaagcccatacccctgcttctgggccca
gtgagcctctatgagtcccacccaactccagattggtaagtagtccttta
agaatgaatttgttccccagatcactggcctctcgctctcctttgggatt
tgaatgtttcccccttttgtattcttttccaaccaagcatcaaatagcgt
aagtgaaagagcaattctggttataaaggaaaattacatgttttgactca
aaattaatctttgttttctcccatctccatggataattgccatatgacag
tttctgcccataaactggtggaagcctgtcacattctgggggggctgggc
cgcccctcagaagaggtcctggagagaggcagcaatgtgggcatggaagc
tgaggcttaacattgatcagtaaagttgagaccctatatttatttttaac
tacaatgtcatggccccttagagctagaaccgaagggaataaaaatcaaa
caggggaaaatgggttggacccaggctatgtctgtggggtgggccagagc
atgagtctggagttaagcttgcctactactacttaccaggtagactcaag
ttctgcatggctgctgccacagtgctgtcatgatctatgtgatgcataga
ataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_111474502_111475657
seq2: B6Ng01-282N16.b_50_1211 (reverse)

seq1  GAAGGGAGGGTTTCTGAAGAAGTCTGATG-ACTTGAATCTC-ACTA-TCT  47
      ||||||||| ||||||| |||||| |||| |||||| | || |||| |||
seq2  GAAGGGAGGATTTCTGAGGAAGTC-GATGAACTTGATTTTCAACTATTCT  49

seq1  TTTCTTGATTTCT-GCATTTGCTTAGATGTTCAGATACAGTAAATATAAG  96
      |||| ||||| || ||||||||||||||| ||||||||||||||||||  
seq2  TTTCCTGATTCCTGGCATTTGCTTAGATG-TCAGATACAGTAAATATAGT  98

seq1  TCTTAAATGTTACTGTGGTTTTG-TTCTGATACTTGTCGTGTGT-ATAGG  144
      ||||||||||||||||||||||| ||||||||| |||||||||| |||||
seq2  TCTTAAATGTTACTGTGGTTTTGTTTCTGATAC-TGTCGTGTGTAATAGG  147

seq1  TTTTCAAGAATGCTTTTACTTATATTGT-AAATATTTGTAAATATTGTTT  193
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTCAAGAATGCTTTTACTTATATTGTAAAATATTTGTAAATATTGTTT  197

seq1  TGTGGCCTTTCATCTTTTTAAATGTATTTTGTACAATTTTCAATTCTACA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTTTCATCTTTTTAAATGTATTTTGTACAATTTTCAATTCTACA  247

seq1  TATACTGCAATAGCACAGGATCTTGGG-AAGTTATTTTATCTGTATATAC  292
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TATACTGCAATAGCACAGGATCTTGGGAAAGTTATTTTATCTGTATATAC  297

seq1  AACTTTGAATGTCTGTGAATTCTTTATGGAGTATAGTTAGAATTAACTTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGAATGTCTGTGAATTCTTTATGGAGTATAGTTAGAATTAACTTT  347

seq1  TCAGTTATATT-CCAGTGGGAGAAATAACTTCAGAGTAAATATTACTACT  391
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTATATTCCCAGTGGGAGAAATAACTTCAGAGTAAATATTACTACT  397

seq1  TGCATTCTCTTTCACCCTGCCTCAAGTTTTATGAGACCTGATTACACTCA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTCTTTCACCCTGCCTCAAGTTTTATGAGACCTGATTACACTCA  447

seq1  GTAACCCCAGGTGACCTGAAAATTGTTATGTAGATGGACTTGGCTCATCC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCCAGGTGACCTGAAAATTGTTATGTAGATGGACTTGGCTCATCC  497

seq1  ACCTGTGTCTACCTCAGGAGGTTTAGGACACTTGTTTCCTGATGAATAAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTCTACCTCAGGAGGTTTAGGACACTTGTTTCCTGATGAATAAA  547

seq1  TGTGTGTGCATAAGCTTTTTGCCAAAACAAAGTGAGTGTCTTTAATATTC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCATAAGCTTTTTGCCAAAACAAAGTGAGTGTCTTTAATATTC  597

seq1  AACATTGCCTGTTTTACTTTTGATTAGATGATTGGATGAAAGTAAGGCGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGCCTGTTTTACTTTTGATTAGATGATTGGATGAAAGTAAGGCGC  647

seq1  ATTGAAAATAAATGGTGAATGAATTTGAACTCACCAAGATGAGTTAAAAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAATAAATGGTGAATGAATTTGAACTCACCAAGATGAGTTAAAAT  697

seq1  TTTATTAATGTACTGTTTATGGTAAGCGTGATAGTTTTTTCCTACCAATG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAATGTACTGTTTATGGTAAGCGTGATAGTTTTTTCCTACCAATG  747

seq1  TATAACAGCTCTATTTCAATGCATTTAATAAAGAAGGGCATTCTTCTAGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGCTCTATTTCAATGCATTTAATAAAGAAGGGCATTCTTCTAGT  797

seq1  TTTCAGCTCATATTATTAGAGGCACAAACGTTTTATTCTTTTCAGGACTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCTCATATTATTAGAGGCACAAACGTTTTATTCTTTTCAGGACTC  847

seq1  AGTAGCCCTCTTTAAATAAATGGCAGTCTTGGGTTTGGTTTTTCTATATC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCCCTCTTTAAATAAATGGCAGTCTTGGGTTTGGTTTTTCTATATC  897

seq1  ATTAGCGATATATTTGCAGGTGTTTACAGAATCCATTGAAGTCATGAAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCGATATATTTGCAGGTGTTTACAGAATCCATTGAAGTCATGAAAA  947

seq1  CAGTATAAATTGCTGTTAAGTGTATATTATATATCCCGGGAAAAATTGGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAAATTGCTGTTAAGTGTATATTATATATCCCGGGAAAAATTGGA  997

seq1  ATTTTGTCTAGGATTTGTATGTCAGCAACACATCTGCAGAAGCTTTTATT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCTAGGATTTGTATGTCAGCAACACATCTGCAGAAGCTTTTATT  1047

seq1  TATAGTATTAATTAAAATTATATTTTCTCTAAGATTGAAATAAGATGGTA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTATTAATTAAAATTATATTTTCTCTAAGATTGAAATAAGATGGTA  1097

seq1  ACCCTTTGATCATGTTTTTAAATAAACAGATTAAAAAAACTTTATCAGTT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTGATCATGTTTTTAAATAAACAGATTAAAAAAACTTTATCAGTT  1147

seq1  TTAGCCAATGAATTC  1156
      |||||||||||||||
seq2  TTAGCCAATGAATTC  1162


seq1: chr4_111330947_111332049
seq2: B6Ng01-282N16.g_66_1170

seq1  GAATTCTTAGAATCTCATTTACAAGTTAATTTAGGGATTATCTCTTTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAATCTCATTTACAAGTTAATTTAGGGATTATCTCTTTGGG  50

seq1  GTCCTCTGTCAGCCTGCATAAAAATTATCTTCATCCTTCACCACTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGTCAGCCTGCATAAAAATTATCTTCATCCTTCACCACTTTTTT  100

seq1  CTTTGTAAGTGTTATGATCACAGATTCAATGAAGTAATGCAGTTTGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAAGTGTTATGATCACAGATTCAATGAAGTAATGCAGTTTGGAGG  150

seq1  GGACATCCGTGAGCATGGCAGGCAAGGACAAGGAGAACCAGGGAGCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATCCGTGAGCATGGCAGGCAAGGACAAGGAGAACCAGGGAGCAGAA  200

seq1  GCCTCAGAGCCAGAATTGGAGCCAGGGCCTGACCCCTCTGTGGGATGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGAGCCAGAATTGGAGCCAGGGCCTGACCCCTCTGTGGGATGCTC  250

seq1  AGCCTCAGTCAAGAGAGGTTTGTCCAGATTGAGAGGGGGCTTGAAACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAGTCAAGAGAGGTTTGTCCAGATTGAGAGGGGGCTTGAAACTGA  300

seq1  GAAAGATGAAGGGCAGTTTTCTTTCTAAGAGCCTCTGCTTTCAACTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGAAGGGCAGTTTTCTTTCTAAGAGCCTCTGCTTTCAACTGCTC  350

seq1  AGGGCACCCCAACACTGAGCTTTGAAGTCCTTTTCAGCAGACTTCTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACCCCAACACTGAGCTTTGAAGTCCTTTTCAGCAGACTTCTTTCC  400

seq1  TCACTAGGCCACAGGAAGACTTAAGGCAAATGCACCCACTCTTAAGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAGGCCACAGGAAGACTTAAGGCAAATGCACCCACTCTTAAGTTAG  450

seq1  GAAAAGCAAATTAGCTCCCTACCAAGCCCATACCCCTGCTTCTGGGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAAATTAGCTCCCTACCAAGCCCATACCCCTGCTTCTGGGCCCA  500

seq1  GTGAGCCTCTATGAGTCCCACCCAACTCCAGATTGGTAAGTAGTCCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCTCTATGAGTCCCACCCAACTCCAGATTGGTAAGTAGTCCTTTA  550

seq1  AGAATGAATTTGTTCCCCAGATCACTGGCCTCTCGCTCTCCTTTGGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAATTTGTTCCCCAGATCACTGGCCTCTCGCTCTCCTTTGGGATT  600

seq1  TGAATGTTTCCCCCTTTTGTATTCTTTTCCAACCAAGCATCAAATAGCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTTTCCCCCTTTTGTATTCTTTTCCAACCAAGCATCAAATAGCGT  650

seq1  AAGTGAAAGAGCAATTCTGGTTATAAAGGAAAATTACATGTTTTGACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAGAGCAATTCTGGTTATAAAGGAAAATTACATGTTTTGACTCA  700

seq1  AAATTAATCTTTGTTTTCTCCCATCTCCATGGATAATTGCCATATGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATCTTTGTTTTCTCCCATCTCCATGGATAATTGCCATATGACAG  750

seq1  TTTCTGCCCATAAACTGGTGGAAGCCTGTCACATTCT-GGGGGGCTGGGC  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTCTGCCCATAAACTGGTGGAAGCCTGTCACATTCTGGGGGGGCTGGGC  800

seq1  CGCCCCTCAGGAAGAGGTCCTGGAGAGAGGCAGCAATGTGGGCATGGAAG  849
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCTCA-GAAGAGGTCCTGGAGAGAGGCAGCAATGTGGGCATGGAAG  849

seq1  CTGAGGCTTAACATTGATCAGTAAAGTTGAGACCCTATATTTATTTTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTTAACATTGATCAGTAAAGTTGAGACCCTATATTTATTTTTAA  899

seq1  CTACAATGTCATGG-CCCTTAGAGCTAGAACCGAAGGGAAT-AAAATCAA  947
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  CTACAATGTCATGGCCCCTTAGAGCTAGAACCGAAGGGAATAAAAATCAA  949

seq1  ACAGGGGAAAAT-GGTTGGACCAAGGCTATGTCTGT-GGGTGGG-CAGAG  994
      |||||||||||| ||||||||| ||||||||||||| ||||||| |||||
seq2  ACAGGGGAAAATGGGTTGGACCCAGGCTATGTCTGTGGGGTGGGCCAGAG  999

seq1  CATGAGTCTGGAGTTAAGCTTGCCTACTTAACTACTTAACCAGGTAGACT  1044
      ||||||||||||||||||||||||||||  ||||||| ||||||||||||
seq2  CATGAGTCTGGAGTTAAGCTTGCCTACT--ACTACTT-ACCAGGTAGACT  1046

seq1  CAAGTTCTGCATTGGCTGCTG-CACAGTGCTGTCATGATCTATGTGATGC  1093
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  CAAGTTCTGCA-TGGCTGCTGCCACAGTGCTGTCATGATCTATGTGATGC  1095

seq1  ATAGAATACA  1103
      ||||||||||
seq2  ATAGAATACA  1105


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