BAC Information

Click to search

BAC

Clone NameB6Ng01-282P11
Chromosome4 (Build37)
Map Location 84,137,828 - 84,278,706
singlet/doubletdoublet
Overlap geneBnc2
Upstream geneLOC100040611, 4930473A06Rik, LOC668010
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2, A930009N24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282P11.bB6Ng01-282P11.g
ACCGA082044GA082045
length1,1241,168
definitionB6Ng01-282P11.b B6Ng01-282P11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,277,586 - 84,278,706)(84,137,828 - 84,138,981)
sequence
gaattctcagtagctttttattaccccccccaaatcattgggttttatta
taagttccaggaattcttaggctttttactactgattaatggacatctgt
ataatctatacaaaaagctgtaaaatacattcattaatctattctacaaa
ctaagattaatttgagtcatctgtgggtatcttataaggtcacggttcta
atttaatttggtaggaattgttagagatttgaatgagattttaaaatcac
ttcccaggagaaggaaaaatacctttggaagaagccagtgagtgttcttc
tgggcaaagcttgaatacttcttgaatgttctcttccttcctagatgaaa
gttctgtacacctggtgtgatagtagctattgaaaccatgagagtttttc
ctgagtttaagttgttctcttgtcacaagtgaagtttttcacgtataatt
tttgttttcttttgtttatttttgagtcagggtcttggtatgttgcccag
gccagtcctaaataccaaactcaagaggttgtcctgtcttaagtccagcc
attgtgcttggtgagatatgtggttgttacaagccactatagaactgttt
aatatacagtgtttgacatacagacttcttgctcttatagaaaaggagtt
tgttagggcaatcactgagcagaatttaatgagtaacgagagcttgcttc
tttgtaaactagtgtgccttgtaaacaaaagaaaacactgagttgatttg
aatgaaactcagctcagctttccattgtggggaaaattcagctgggtaga
gaactaatgggtttcaatgattgggttggagggagactactgatttataa
aataaaaccattttttaattccttaaactatgtgactagttgtagtagtt
tgaaaggacatgtcaaaagtttggattcatcgtatactttggaatgccca
taatttttcatggtttgaaataaataacacgctgagtatagtatgatttt
tagcatttacaggtcctggcttgcattcctggcatcagaattaaacagaa
actatgtattgggttacatttgcagaattagttattgattgttagaatgc
ttgagtttattaatatttatatac

gaattcactttctgattttgatgtattgagttcttttcttgcctcttctt
acccatagatgtataattcgggtctgctgtattctttcaaaggaagaact
ggcagggcagttgctgttacttaggataactatgtaatctctttgacttt
ctcttgttgggcaaactgcccagtgaatatcaatttttttagagctacaa
atatggttttaatagattcacagattttaaattattataattcagggcac
gtctctcccagggcgagcaaataactcataacaatccatgtagatgcaaa
ggagatgacaattgatcaatctgcatgtgagtacattgacagagttactg
ctcctcttttctctccaaaccctccccacaacactcagacaatttcacat
ggaaaaaatgcctgtctatgggagttcaaattagtcataatacccacttt
ggggactgaagaacacttactgtaaatcagccactcagaaaccacacttg
acatattttggttataatataactgtaagttgcataatattgtacgtatt
gattggctcttgagattgtaatggaaagcaactgccatacattgaaagtg
accaaccacaaggcaggaaaattgttcctgaagattccacaaacagtcat
ttttcttatactctaaacctccttgtcctctacacagtatattctaacac
acacttaaggctctatttttttttaaaggctgaatttttaccatattggc
ctgttaacctcaaattgtcacctgttcacctcactcagactaaaagagtt
ctagcatggtaaactgatttcttctttaatggaagcagtgacctgtgtct
gaattagagaaagaacaaatcacacacacacacacacacacacacacaca
cacacacacacacaaatacctaactaggtaacgattacagaatgactgag
gaagttaagcaactgtaaaaccataataaaatctacctctctggtatttc
ttttattcagttcctttgttgtcaacaataaaagtaatgggagaattttt
tagtttgtgagcctactatcctgtgtagttgggtttgcagtgtggtgtct
tcctaaccttcccacacatcatggagaaccatgctttcctctggcttccc
ttaagtctctcttttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_84277586_84278706
seq2: B6Ng01-282P11.b_45_1168 (reverse)

seq1  GTATAT-AATATT-ATAAACTCAAGCATTCTAAC-ATC-ATTACT-ATTC  45
      |||||| |||||| |||||||||||||||||||| ||| || ||| ||||
seq2  GTATATAAATATTAATAAACTCAAGCATTCTAACAATCAATAACTAATTC  50

seq1  TGCAAATGTAACC--ATACATAGTTTTTCTGTTTATTTCTGATGCCAGGA  93
      |||||||||||||  ||||||||  |||||||||| ||||||||||||||
seq2  TGCAAATGTAACCCAATACATAG--TTTCTGTTTAATTCTGATGCCAGGA  98

seq1  ATGCAAGCCAGGACCTTGTAAATGCTAAAAATCATACTATACTCAGCGTG  143
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGCAAGCCAGGACC-TGTAAATGCTAAAAATCATACTATACTCAGCGTG  147

seq1  TTATTTATTTCAAACCATGAAAAATTATGGGCATTCCAAAGTATACGATG  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTCAAACCATGAAAAATTATGGGCATTCCAAAGTATACGATG  197

seq1  AATCCAAACTTTTGACATGTCCCTTTCAAACTACTACAACTAGTCACATA  243
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATCCAAACTTTTGACATGT-CCTTTCAAACTACTACAACTAGTCACATA  246

seq1  GTTTAAGGAATTAAAAAATGGTTTTATTTTATAAATCAGTAGTCTCCCTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAGGAATTAAAAAATGGTTTTATTTTATAAATCAGTAGTCTCCCTC  296

seq1  CAACCCAATCATTGAAACCCATTAGTTCTCTACCCAGCTGAATTTTCCCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAATCATTGAAACCCATTAGTTCTCTACCCAGCTGAATTTTCCCC  346

seq1  ACAATGGAAAGCTGAGCTGAGTTTCATTCAAATCAACTCAGTGTTTTCTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGAAAGCTGAGCTGAGTTTCATTCAAATCAACTCAGTGTTTTCTT  396

seq1  TTGTTTACAAGGCACACTAGTTTACAAAGAAGCAAGCTCTCGTTACTCAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTACAAGGCACACTAGTTTACAAAGAAGCAAGCTCTCGTTACTCAT  446

seq1  TAAATTCTGCTCAGTGATTGCCCTAACAAACTCCTTTTCTATAAGAGCAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTGCTCAGTGATTGCCCTAACAAACTCCTTTTCTATAAGAGCAA  496

seq1  GAAGTCTGTATGTCAAACACTGTATATTAAACAGTTCTATAGTGGCTTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTGTATGTCAAACACTGTATATTAAACAGTTCTATAGTGGCTTGT  546

seq1  AACAACCACATATCTCACCAAGCACAATGGCTGGACTTAAGACAGGACAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCACATATCTCACCAAGCACAATGGCTGGACTTAAGACAGGACAA  596

seq1  CCTCTTGAGTTTGGTATTTAGGACTGGCCTGGGCAACATACCAAGACCCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGAGTTTGGTATTTAGGACTGGCCTGGGCAACATACCAAGACCCT  646

seq1  GACTCAAAAATAAACAAAAGAAAACAAAAATTATACGTGAAAAACTTCAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAAAATAAACAAAAGAAAACAAAAATTATACGTGAAAAACTTCAC  696

seq1  TTGTGACAAGAGAACAACTTAAACTCAGGAAAAACTCTCATGGTTTCAAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACAAGAGAACAACTTAAACTCAGGAAAAACTCTCATGGTTTCAAT  746

seq1  AGCTACTATCACACCAGGTGTACAGAACTTTCATCTAGGAAGGAAGAGAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACTATCACACCAGGTGTACAGAACTTTCATCTAGGAAGGAAGAGAA  796

seq1  CATTCAAGAAGTATTCAAGCTTTGCCCAGAAGAACACTCACTGGCTTCTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGAAGTATTCAAGCTTTGCCCAGAAGAACACTCACTGGCTTCTT  846

seq1  CCAAAGGTATTTTTCCTTCTCCTGGGAAGTGATTTTAAAATCTCATTCAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGTATTTTTCCTTCTCCTGGGAAGTGATTTTAAAATCTCATTCAA  896

seq1  ATCTCTAACAATTCCTACCAAATTAAATTAGAACCGTGACCTTATAAGAT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAACAATTCCTACCAAATTAAATTAGAACCGTGACCTTATAAGAT  946

seq1  ACCCACAGATGACTCAAATTAATCTTAGTTTGTAGAATAGATTAATGAAT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGATGACTCAAATTAATCTTAGTTTGTAGAATAGATTAATGAAT  996

seq1  GTATTTTACAGCTTTTTGTATAGATTATACAGATGTCCATTAATCAGTAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTACAGCTTTTTGTATAGATTATACAGATGTCCATTAATCAGTAG  1046

seq1  TAAAAAGCCTAAGAATTCCTGGAACTTATAATAAAACCCAATGATTTGGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGCCTAAGAATTCCTGGAACTTATAATAAAACCCAATGATTTGGG  1096

seq1  GGGGGTAATAAAAAGCTACTGAGAATTC  1121
      ||||||||||||||||||||||||||||
seq2  GGGGGTAATAAAAAGCTACTGAGAATTC  1124


seq1: chr4_84137828_84138981
seq2: B6Ng01-282P11.g_68_1235

seq1  GAATTCACTTTCTGATTTTGATGTATTGAGTTCTTTTCTTGCCTCTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTCTGATTTTGATGTATTGAGTTCTTTTCTTGCCTCTTCTT  50

seq1  ACCCATAGATGTATAATTCGGGTCTGCTGTATTCTTTCAAAGGAAGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATAGATGTATAATTCGGGTCTGCTGTATTCTTTCAAAGGAAGAACT  100

seq1  GGCAGGGCAGTTGCTGTTACTTAGGATAACTATGTAATCTCTTTGACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGCAGTTGCTGTTACTTAGGATAACTATGTAATCTCTTTGACTTT  150

seq1  CTCTTGTTGGGCAAACTGCCCAGTGAATATCAATTTTTTTAGAGCTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTGGGCAAACTGCCCAGTGAATATCAATTTTTTTAGAGCTACAA  200

seq1  ATATGGTTTTAATAGATTCACAGATTTTAAATTATTATAATTCAGGGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTTTAATAGATTCACAGATTTTAAATTATTATAATTCAGGGCAC  250

seq1  GTCTCTCCCAGGGCGAGCAAATAACTCATAACAATCCATGTAGATGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCCAGGGCGAGCAAATAACTCATAACAATCCATGTAGATGCAAA  300

seq1  GGAGATGACAATTGATCAATCTGCATGTGAGTACATTGACAGAGTTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGACAATTGATCAATCTGCATGTGAGTACATTGACAGAGTTACTG  350

seq1  CTCCTCTTTTCTCTCCAAACCCTCCCCACAACACTCAGACAATTTCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTTTCTCTCCAAACCCTCCCCACAACACTCAGACAATTTCACAT  400

seq1  GGAAAAAATGCCTGTCTATGGGAGTTCAAATTAGTCATAATACCCACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATGCCTGTCTATGGGAGTTCAAATTAGTCATAATACCCACTTT  450

seq1  GGGGACTGAAGAACACTTACTGTAAATCAGCCACTCAGAAACCACACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTGAAGAACACTTACTGTAAATCAGCCACTCAGAAACCACACTTG  500

seq1  ACATATTTTGGTTATAATATAACTGTAAGTTGCATAATATTGTACGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTGGTTATAATATAACTGTAAGTTGCATAATATTGTACGTATT  550

seq1  GATTGGCTCTTGAGATTGTAATGGAAAGCAACTGCCATACATTGAAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCTCTTGAGATTGTAATGGAAAGCAACTGCCATACATTGAAAGTG  600

seq1  ACCAACCACAAGGCAGGAAAATTGTTCCTGAAGATTCCACAAACAGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCACAAGGCAGGAAAATTGTTCCTGAAGATTCCACAAACAGTCAT  650

seq1  TTTTCTTATACTCTAAACCTCCTTGTCCTCTACACAGTATATTCTAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATACTCTAAACCTCCTTGTCCTCTACACAGTATATTCTAACAC  700

seq1  ACACTTAAGGCTCTATTTTTTTTTAAAGGCTGAATTTTTACCATATTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAAGGCTCTATTTTTTTTTAAAGGCTGAATTTTTACCATATTGGC  750

seq1  CTGTTAACCTCAAATTGTCACCTGTTCACCTCACTCAGACTAAAAGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAACCTCAAATTGTCACCTGTTCACCTCACTCAGACTAAAAGAGTT  800

seq1  CTAGCATGGTAAACTGATTTCTTCTTTAATGG-AGCAGTGACCTGTGTCT  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTAGCATGGTAAACTGATTTCTTCTTTAATGGAAGCAGTGACCTGTGTCT  850

seq1  GAATTAGAGAAAGAACAAATCACACACACACACACACACACACACACACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGAGAAAGAACAAATCACACACACACACACACACACACACACACA  900

seq1  CACACACACACACAAATACCTAACTAGGTAACGATTTACAGAATGACTGA  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACACACACACACAAATACCTAACTAGGTAACGA-TTACAGAATGACTGA  949

seq1  GGAAGTTAAAGCAACTGTAAAACCATAATAAAATCTACCTCTCTGGTATT  999
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTT-AAGCAACTGTAAAACCATAATAAAATCTACCTCTCTGGTATT  998

seq1  TC-TTTATTCAGTTCCTTTGTTGTTCAACA--TAAAGTAAATGGAGAA-T  1045
      || |||||||||||||||||||| ||||||   |||||||  |||||| |
seq2  TCTTTTATTCAGTTCCTTTGTTG-TCAACAATAAAAGTAATGGGAGAATT  1047

seq1  TTTTAGTTTGTGAG-CTACTAT-CTGTGTAGTT-GGTTTGCAGTGT-GTG  1091
      |||||||||||||| ||||||| |||||||||| |||||||||||| |||
seq2  TTTTAGTTTGTGAGCCTACTATCCTGTGTAGTTGGGTTTGCAGTGTGGTG  1097

seq1  TCTTC--TACCTTCC--CACATCAGTGGAG-ACCATGCTTTCCTCT-GCT  1135
      |||||   |||||||  ||||||| ||||| ||||||||||||||| |||
seq2  TCTTCCTAACCTTCCCACACATCA-TGGAGAACCATGCTTTCCTCTGGCT  1146

seq1  CCCTTAAAGTCTC---TTTCCC  1154
       || | |||||||   ||||||
seq2  TCCCTTAAGTCTCTCTTTTCCC  1168


| Home | SequenceCutter | Blast | Download |