BAC Information

Click to search

BAC

Clone NameB6Ng01-283E16
Chromosome4 (Build37)
Map Location 107,034,245 - 107,165,139
singlet/doubletdoublet
Overlap geneTmem48, Glis1
Upstream geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920
Downstream geneDmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283E16.bB6Ng01-283E16.g
ACCGA082291GA082292
length1,105796
definitionB6Ng01-283E16.b B6Ng01-283E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,164,035 - 107,165,139)(107,034,245 - 107,035,033)
sequence
gaattctccaccgtggggagcaagggagagtgaaggaaatcctgagctgt
gcgctgttgccatgggtacagccacaccgactactcggatgcctcagccc
caagggagtggcaaaactttctccctagggtgaggatcagagggatggca
aagtctcccttgggtgggggagcccatgtgtgaatgtagatagtatacgc
agaaaatatccaccatagctttctcccccagacagtgaagccctgaagat
tgctcctcctaatgagataagctagacctgcttccttgttcagttgtata
taacaagcatgcctccttgtttatatcacatgtatatgtatatactagtc
ccacctcattcagctgcacgcagcaaccccacatccatccctattccact
gtacatattaaacaggataggcagggggctctaggtcctctatcagaaag
cccagtcctccctaatcccagccttcctgttcatatgtacatgtttgtct
tttctgcattcccttgctgccccaatcacatccatccctggatccatgct
gggcaccacactctatgctggcctctgagccctcctagcaagctcctgtc
tccatggggctcccagtacactaacccgacttggtctagtagtcatgttc
acatactcttttaccaagtgttgtttccaaggtgctgtgatcatctttgc
tctccggcacccaacacatcacctggccagcaaggtctacaaatgactca
agctctctataaagcacgcaatgtgggcagtgtccaaagggagcagacgc
aggggaagctgctgtcatctctgtgaggggaacgtgtgagagaatgcttc
tcattctgagttagtcactgcagaattgctagacagccgccagcggagaa
ttgtttaaaactacacgaacctttctttacagctgtagatatttctaaca
agtagaagactctgaaggacaacgggctcactacgtgtggagtcgacacg
gtaatgagctctcaaaaatacttttaaccagaagaaaaaatgtcaggcgc
aaaacctatcctgcagaagccccgctgagctgctggatcatatgaagcat
atctg
gaattcactctatagaccaggctggcctcaaactcagaaatctgcctctc
aagtgctgggcttaaaggcatgtgccaccacgcctagcagtttctttatt
tttattttattttaaagctttatttatttttatgagtacactgtagctgt
catcagacacaccagaagagggcatcgaatcttattacagatggtcgaga
cccaccacgtggttattgggagttgaactcaggacctctagaagagcagt
cagtgctcttaaccactgagccatctctccagccccctggactcagtttc
aatatattggtgggaatagacagtattcagtagtgtgctcctatacagct
gagtcactcacgctgaggctgagcgacttggtcacactcttgctatttgc
agggctctggggtctttctcccgcatctgcttcactccatggccttcacc
catggccttgtacactctggagtgtccagatggaaagctttggtgcagcc
tctttctcacagtcctgcagtttgggtatgctcttgacctgtgggtttca
tttgccatctgtgatctacctttgtaagaaacctgtgtagtattggaaag
agtgaaaatctgtattcgcctggagcacggcgttgctcatcctacgtggg
cttccccatggttctctcaacaatcggtttctccagagttctgacccctg
tggaacgcatggtcccaaggagtccagcctgtctggggggatagagggag
gagcctgagcttgcctaccaacgggactggaggtctttgctcaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_107164035_107165139
seq2: B6Ng01-283E16.b_45_1149 (reverse)

seq1  CAGATATGGCTTCATATGACCCAGCCAGCTCAGCGGGGC-TCTGCAGGAT  49
      ||||||| ||||||||||| |||| |||||||||||||| ||||||||||
seq2  CAGATAT-GCTTCATATGATCCAG-CAGCTCAGCGGGGCTTCTGCAGGAT  48

seq1  AGGTTTTGCGCCTGGACA-TTTTTCTTCTGGTTAAAAGTA-TTTTGAGAG  97
      ||||||||||||| |||| ||||||||||||||||||||| |||||||||
seq2  AGGTTTTGCGCCT-GACATTTTTTCTTCTGGTTAAAAGTATTTTTGAGAG  97

seq1  CTCATTACCGTGTCGACTCCACACGTAGTGAGCCCGTTGTCCTTCAGAGT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTACCGTGTCGACTCCACACGTAGTGAGCCCGTTGTCCTTCAGAGT  147

seq1  CTTCTACTTGTTAGAAATATCTACAGCTGTAAAGAAAGGTTCGTGTAGTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACTTGTTAGAAATATCTACAGCTGTAAAGAAAGGTTCGTGTAGTT  197

seq1  TTAAACAATTCTCCGCTGGCGGCTGTCTAGCAATTCTGCAGTGACTAACT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACAATTCTCCGCTGGCGGCTGTCTAGCAATTCTGCAGTGACTAACT  247

seq1  CAGAATGAGAAGCATTCTCTCACACGTTCCCCTCACAGAGATGACAGCAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGAGAAGCATTCTCTCACACGTTCCCCTCACAGAGATGACAGCAG  297

seq1  CTTCCCCTGCGTCTGCTCCCTTTGGACACTGCCCACATTGCGTGCTTTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCTGCGTCTGCTCCCTTTGGACACTGCCCACATTGCGTGCTTTAT  347

seq1  AGAGAGCTTGAGTCATTTGTAGACCTTGCTGGCCAGGTGATGTGTTGGGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTTGAGTCATTTGTAGACCTTGCTGGCCAGGTGATGTGTTGGGT  397

seq1  GCCGGAGAGCAAAGATGATCACAGCACCTTGGAAACAACACTTGGTAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGAGAGCAAAGATGATCACAGCACCTTGGAAACAACACTTGGTAAAA  447

seq1  GAGTATGTGAACATGACTACTAGACCAAGTCGGGTTAGTGTACTGGGAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGTGAACATGACTACTAGACCAAGTCGGGTTAGTGTACTGGGAGC  497

seq1  CCCATGGAGACAGGAGCTTGCTAGGAGGGCTCAGAGGCCAGCATAGAGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGAGACAGGAGCTTGCTAGGAGGGCTCAGAGGCCAGCATAGAGTG  547

seq1  TGGTGCCCAGCATGGATCCAGGGATGGATGTGATTGGGGCAGCAAGGGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCCAGCATGGATCCAGGGATGGATGTGATTGGGGCAGCAAGGGAA  597

seq1  TGCAGAAAAGACAAACATGTACATATGAACAGGAAGGCTGGGATTAGGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAAAGACAAACATGTACATATGAACAGGAAGGCTGGGATTAGGGA  647

seq1  GGACTGGGCTTTCTGATAGAGGACCTAGAGCCCCCTGCCTATCCTGTTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGGCTTTCTGATAGAGGACCTAGAGCCCCCTGCCTATCCTGTTTA  697

seq1  ATATGTACAGTGGAATAGGGATGGATGTGGGGTTGCTGCGTGCAGCTGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTACAGTGGAATAGGGATGGATGTGGGGTTGCTGCGTGCAGCTGAA  747

seq1  TGAGGTGGGACTAGTATATACATATACATGTGATATAAACAAGGAGGCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGGGACTAGTATATACATATACATGTGATATAAACAAGGAGGCAT  797

seq1  GCTTGTTATATACAACTGAACAAGGAAGCAGGTCTAGCTTATCTCATTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTATATACAACTGAACAAGGAAGCAGGTCTAGCTTATCTCATTAG  847

seq1  GAGGAGCAATCTTCAGGGCTTCACTGTCTGGGGGAGAAAGCTATGGTGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCAATCTTCAGGGCTTCACTGTCTGGGGGAGAAAGCTATGGTGGA  897

seq1  TATTTTCTGCGTATACTATCTACATTCACACATGGGCTCCCCCACCCAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGCGTATACTATCTACATTCACACATGGGCTCCCCCACCCAAG  947

seq1  GGAGACTTTGCCATCCCTCTGATCCTCACCCTAGGGAGAAAGTTTTGCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTTTGCCATCCCTCTGATCCTCACCCTAGGGAGAAAGTTTTGCCA  997

seq1  CTCCCTTGGGGCTGAGGCATCCGAGTAGTCGGTGTGGCTGTACCCATGGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTGGGGCTGAGGCATCCGAGTAGTCGGTGTGGCTGTACCCATGGC  1047

seq1  AACAGCGCACAGCTCAGGATTTCCTTCACTCTCCCTTGCTCCCCACGGTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCGCACAGCTCAGGATTTCCTTCACTCTCCCTTGCTCCCCACGGTG  1097

seq1  GAGAATTC  1105
      ||||||||
seq2  GAGAATTC  1105

seq1: chr4_107034245_107035033
seq2: B6Ng01-283E16.g_66_861

seq1  GAATTCACTCTATAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTATAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTCTC  50

seq1  AAGTGCTGGGCTTAAAGGCATGTGCCACCACGCCTAGCAGTTTCTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGCTTAAAGGCATGTGCCACCACGCCTAGCAGTTTCTTTATT  100

seq1  TTTATTTTATTTTAAAGCTTTATTTATTTTTATGAGTACACTGTAGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTATTTTAAAGCTTTATTTATTTTTATGAGTACACTGTAGCTGT  150

seq1  CATCAGACACACCAGAAGAGGGCATCGAATCTTATTACAGATGGTCGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACACACCAGAAGAGGGCATCGAATCTTATTACAGATGGTCGAGA  200

seq1  CCCACCACGTGGTTATTGGGAGTTGAACTCAGGACCTCTAGAAGAGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACGTGGTTATTGGGAGTTGAACTCAGGACCTCTAGAAGAGCAGT  250

seq1  CAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCCTGGACTCAGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCCTGGACTCAGTTTC  300

seq1  AATATATTGGTGGGAATAGACAGTATTCAGTAGTGTGCTCCTATACAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTGGTGGGAATAGACAGTATTCAGTAGTGTGCTCCTATACAGCT  350

seq1  GAGTCACTCACGCTGAGGCTGAGCGACTTGGTCACACTCTTGCTATTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACTCACGCTGAGGCTGAGCGACTTGGTCACACTCTTGCTATTTGC  400

seq1  AGGGCTCTGGGGTCTTTCTCCCGCATCTGCTTCACTCCATGGCCTTCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCTGGGGTCTTTCTCCCGCATCTGCTTCACTCCATGGCCTTCACC  450

seq1  CATGGCCTTGTACACTCTGGAGTGTCCAGATGGAAAGCTTTGGTGCAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCTTGTACACTCTGGAGTGTCCAGATGGAAAGCTTTGGTGCAGCC  500

seq1  TCTTTCTCACAGTCCTGCAG-TTGGGTATGCTCTTGACCTGTGGGTTTCA  549
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTTTCTCACAGTCCTGCAGTTTGGGTATGCTCTTGACCTGTGGGTTTCA  550

seq1  TTTGCCATCTGTGATCTACCTTTGTAAGAAACCTGTGTAGTATTGGAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATCTGTGATCTACCTTTGTAAGAAACCTGTGTAGTATTGGAAAG  600

seq1  AGTGAAAATCTGTATTCGCCTGGAGCACGGCGTTGCTCATCCTACGTGGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAATCTGTATTCGCCTGGAGCACGGCGTTGCTCATCCTACGTGGG  650

seq1  CTTCCCCATGGTTCTCTCAAC-ATCGGTTTCTCCAGAGTTCTGACCCCTG  698
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTCCCCATGGTTCTCTCAACAATCGGTTTCTCCAGAGTTCTGACCCCTG  700

seq1  TGGAACGCATGGTCCCAAGGAGTCCAGCCTGTCCGGGGG--AAGAGGGAG  746
      ||||||||||||||||||||||||||||||||| |||||   ||||||||
seq2  TGGAACGCATGGTCCCAAGGAGTCCAGCCTGTCTGGGGGGATAGAGGGAG  750

seq1  GAGCCTGAGCTTGCCTACCAA-TGGACT-GAAGTCTTTGC-CAAGT  789
      |||||||||||||||||||||  ||||| || |||||||| |||||
seq2  GAGCCTGAGCTTGCCTACCAACGGGACTGGAGGTCTTTGCTCAAGT  796