BAC Information

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BAC

Clone NameB6Ng01-283G23
Chromosome4 (Build37)
Map Location 43,525,291 - 43,674,405
singlet/doubletdoublet
Overlap geneCar9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik
Upstream geneLOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik
Downstream geneOlfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk, Pax5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283G23.bB6Ng01-283G23.g
ACCGA082396GA082397
length1,1651,010
definitionB6Ng01-283G23.b B6Ng01-283G23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,525,291 - 43,526,430)(43,673,395 - 43,674,405)
sequence
gaattcctgcttcactgctggtgagtctgggtcccttgttcctggtgcca
gtggcgggagggggccacacccttttagtatttcagcccaggagctagtc
tttactttttctgtaaaataaacttgatccccaaatcgatgtgatcggtc
aagtaagagacctgtacctctggcttagttgtctgaatgaggctccagaa
atctcctgtgagaccccctcccccaaggcacctttcacctagctgctgga
agggagaagagtgctttacccttctcactatctgcctccattctccagat
ggcctgttctgccgaccgaggccctgggggctgcctgaacactcactggg
gaaagggtcaggcaggagtatgggaagccagcttgcagggaatcccctgg
catccccagaagcagctgcctctccccttccaggtgacatcctagccttg
gtgtttggccttctctttgctgtcaccagcatcgccttcctcctacagct
gaggaggcagcacaggtatctatgaccctccttggcatagcattcttgta
taacccagaattcccggactgcaaatgagctctcatgcggagtcggcttt
ctgattctcgttccttgttctataggcacagaagtgggaccaaagataga
gttagctacagtccggcagagatgacagaaactggagcctaataaggaga
aaccagctaaaggaatctggaaaccttgtcctgtcctgcctgttatacag
cctcctttttaaccactacgaaatcatttccatctttttaactttcttct
ttccttaaagtactgtgataggagctaaccgtgaaaaaacaagattgggc
tcaattcttgctgggttttgatggttttgaagacagggtttctctgtgta
gccctggctgtcctggactcactctgtagcctaggctggccttgaactca
gagatccgattgcctctgccttcttagtgccaggactgaagggtatgtac
cactaccaccggccaccccgcaattcttgcttttattcttgcaggtcaat
gcttctaccaactggagctacacacacccccttccatcttacattatgca
agggcagacttggccctttgcaattgtgtaatgtattggtgagatgggag
aatttgaagaccagg
gaattctttcagcccccacagctaaaaccggagtcttgtaactgcctgtt
ggtgcccacattcagggacactagcttcctttttctttcctgatgccctt
tccattcctcacaacttatattattttgatcttcgggtcatgacttctga
caggcccctttctcctgatccctggagagccctcagccacccttctcaga
atcgttgagggcattagttacaatacactagaacacaggggcattgcagg
ggtgtcaacctggccagtgagggagcagacattctccctcccattcacac
cagatctggccaacttccagcctttctccagggtccttcactggcagttc
ccctcatgaaccaattcctatcacctactatcctcttggccagttagctt
atctcttgctcaccgttgacacttcagaaaggttggactctggcatggag
aggaaaggaggtaagaaaccctacagtcacaggggcctcgtgttcacctt
caatattttctataatctccctgttccaaaactgaagaccgccttcagtt
atctctcataggctggcaaagagtggatcccaggatgggaagggaaccaa
tgattctttgtgataagaaaattatttttaaaaagtctaagagccagagg
tgagcagggtagcagggtaaggaggtgagttccccaccccctactccagg
ggagccatctgaacacttacttgtagggagtttagggtttcttttccttt
ttcagtcttccctattactccatatgtggtatctacattggctggcgctg
cccgcattatttatgggactgtttcctgataggagatgagtcccagtgct
tttgtggacatttgtagagagaacaccagatcatctcatgtaggaaagaa
gttaccagactcttgtcatatatggaagggctgctgtagtctagtctctc
tagggcagagacagatgaatgtgaatacagggagagatcggcattgaagg
tgggatcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_43525291_43526430
seq2: B6Ng01-283G23.b_43_1207

seq1  GAATTCCTGCTTCACTGCTGGTGAGTCTGGGTCCCTTGTTCCTGGTGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTTCACTGCTGGTGAGTCTGGGTCCCTTGTTCCTGGTGCCA  50

seq1  GTGGCGGGAGGGGGCCACACCCTTTTAGTATTTCAGCCCAGGAGCTAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCGGGAGGGGGCCACACCCTTTTAGTATTTCAGCCCAGGAGCTAGTC  100

seq1  TTTACTTTTTCTGTAGAATAAACTTGATCCCCAAATCGATGTGATCGGTC  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTACTTTTTCTGTAAAATAAACTTGATCCCCAAATCGATGTGATCGGTC  150

seq1  AAGTAAGAGACCTGTACCTCTGGCTTAGTTGTCTGAATGAGGCTCCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGAGACCTGTACCTCTGGCTTAGTTGTCTGAATGAGGCTCCAGAA  200

seq1  ATCTCCTGTGAGACCCCCTCCCCCAAGGCACCTTTCACCTAGCTGCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTGTGAGACCCCCTCCCCCAAGGCACCTTTCACCTAGCTGCTGGA  250

seq1  AGGGAGAAGAGTGCTTTACCCTTCTCACTATCTGCCTCCATTCTCCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAGAGTGCTTTACCCTTCTCACTATCTGCCTCCATTCTCCAGAT  300

seq1  GGCCTGTTCTGCCGACCGAGGCCCTGGGGGCTGCCTGAACACTCACTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTTCTGCCGACCGAGGCCCTGGGGGCTGCCTGAACACTCACTGGG  350

seq1  GAAAGGGTCAGGCAGGAGTATGGGAAGCCAGCTTGCAGGGAATCCCCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGTCAGGCAGGAGTATGGGAAGCCAGCTTGCAGGGAATCCCCTGG  400

seq1  CATCCCCAGAAGCAGCTGCCTCTCCCCTTCCAGGTGACATCCTAGCCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCAGAAGCAGCTGCCTCTCCCCTTCCAGGTGACATCCTAGCCTTG  450

seq1  GTGTTTGGCCTTCTCTTTGCTGTCACCAGCATCGCCTTCCTCCTACAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGCCTTCTCTTTGCTGTCACCAGCATCGCCTTCCTCCTACAGCT  500

seq1  GAGGAGGCAGCACAGGTATCTATGACCCTCCTTGGCATAGCATTCTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGCAGCACAGGTATCTATGACCCTCCTTGGCATAGCATTCTTGTA  550

seq1  TAACCCAGAATTCCCGGACTGCAAATGAGCTCTCATGCGGAGTCGGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAGAATTCCCGGACTGCAAATGAGCTCTCATGCGGAGTCGGCTTT  600

seq1  CTGATTCTCGTTCCTTGTTCTATAGGCACAGAAGTGGGACCAAAGATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTCGTTCCTTGTTCTATAGGCACAGAAGTGGGACCAAAGATAGA  650

seq1  GTTAGCTACAGTCCGGCAGAGATGACAGAAACTGGAGCCTAATAAGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTACAGTCCGGCAGAGATGACAGAAACTGGAGCCTAATAAGGAGA  700

seq1  AACCAGCTAAAGGAATCTGGAAACCTTGTCCTGTCCTGCCTGTTATACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCTAAAGGAATCTGGAAACCTTGTCCTGTCCTGCCTGTTATACAG  750

seq1  CCTCCTTTTTAACCACTACGAAATCATTTCCATCTTTTTAACTTTCTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTTTAACCACTACGAAATCATTTCCATCTTTTTAACTTTCTTCT  800

seq1  TTCCTTAAAGTACTGTGATAGGAGCTAACCGTGAAAAAACAAGATTGGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAAGTACTGTGATAGGAGCTAACCGTGAAAAAACAAGATTGGGC  850

seq1  TCAATTCTTGCTGGGTTTTGATGGTTTTGAAGACAGGGTTTCTCTGTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTTGCTGGGTTTTGATGGTTTTGAAGACAGGGTTTCTCTGTGTA  900

seq1  GCCCTGGCTGTCCTGGGACTCACTCTGTAGCCTAGGCTGGCCTTGAACTC  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCTGTCCT-GGACTCACTCTGTAGCCTAGGCTGGCCTTGAACTC  949

seq1  AGAGATCCGATTGCCTCTGCCTTCTTAGTGCCAGGACTG-AGGGTATGTA  999
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAGATCCGATTGCCTCTGCCTTCTTAGTGCCAGGACTGAAGGGTATGTA  999

seq1  CCACTACCACC-GCCACCCCGCAATTCTTGCTTTTATTC-TGCAGTCAAA  1047
      ||||||||||| ||||||||||||||||||||||||||| |||||   ||
seq2  CCACTACCACCGGCCACCCCGCAATTCTTGCTTTTATTCTTGCAGGTCAA  1049

seq1  TGC-TCTACC-ACT-GAGCTACACA----CCCCTCCATCTTAC--TATGC  1088
      ||| |||||| ||| ||||||||||    ||| ||||||||||  |||||
seq2  TGCTTCTACCAACTGGAGCTACACACACCCCCTTCCATCTTACATTATGC  1099

seq1  A--GGCAGAC-TGGCC--TTGC-ATTGTGT-ATGTA-TGGT--GATG---  1125
      |  ||||||| |||||  |||| ||||||| ||||| ||||  ||||   
seq2  AAGGGCAGACTTGGCCCTTTGCAATTGTGTAATGTATTGGTGAGATGGGA  1149

seq1  GAGTTTGAAG-CCAGG  1140
      || ||||||| |||||
seq2  GAATTTGAAGACCAGG  1165

seq1: chr4_43673395_43674405
seq2: B6Ng01-283G23.g_66_1075 (reverse)

seq1  CAAGACCCCACCTTTCTATGCAGATCTCTCCC-GGATTCACATTCATCTG  49
      ||||| |||||| ||| |||| |||||||||| | |||||||||||||||
seq2  CAAGATCCCACC-TTCAATGCCGATCTCTCCCTGTATTCACATTCATCTG  49

seq1  TCTCTCCCTTCGAGAGACCAGAATACAGCAGCCCCTCCATATTTGACAAG  99
      ||||| || | ||||||| ||| ||||||||||| ||||||| |||||||
seq2  TCTCTGCCCTAGAGAGACTAGACTACAGCAGCCCTTCCATATATGACAAG  99

seq1  AGTCTGGTAACTTCTTTCCTACCTGAGATGATCTGGTGTTCTCTCAACAA  149
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  AGTCTGGTAACTTCTTTCCTACATGAGATGATCTGGTGTTCTCTCTACAA  149

seq1  ATGTCCACAAAAGCACTTGGACTCATCTCCTATCCGGAAACAGTCCCATA  199
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  ATGTCCACAAAAGCACTGGGACTCATCTCCTATCAGGAAACAGTCCCATA  199

seq1  AATAATGCGGGCAGCGCCAGCCAATGTAGATACCTACATATGGAGTAATA  249
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AATAATGCGGGCAGCGCCAGCCAATGTAGATACC-ACATATGGAGTAATA  248

seq1  GGGAAGACTGAAAAAGGAAAAGAAACCCTAAACTCCCTACAAGTAAGTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGACTGAAAAAGGAAAAGAAACCCTAAACTCCCTACAAGTAAGTGT  298

seq1  TCAGATGGCTCCCCTGGAGTAGGGGGTGGGGAACTCACCTCCTTACCCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATGGCTCCCCTGGAGTAGGGGGTGGGGAACTCACCTCCTTACCCTG  348

seq1  CTACCCTGCTCACCTCTGGCTCTTAGACTTTTTAAAAATAATTTTCTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTGCTCACCTCTGGCTCTTAGACTTTTTAAAAATAATTTTCTTAT  398

seq1  CACAAAGAATCATTGGTTCCCTTCCCATCCTGGGATCCACTCTTTGCCAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGAATCATTGGTTCCCTTCCCATCCTGGGATCCACTCTTTGCCAG  448

seq1  CCTATGAGAGATAACTGAAGGCGGTCTTCAGTTTTGGAACAGGGAGATTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGAGAGATAACTGAAGGCGGTCTTCAGTTTTGGAACAGGGAGATTA  498

seq1  TAGAAAATATTGAAGGTGAACACGAGGCCCCTGTGACTGTAGGGTTTCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATATTGAAGGTGAACACGAGGCCCCTGTGACTGTAGGGTTTCTT  548

seq1  ACCTCCTTTCCTCTCCATGCCAGAGTCCAACCTTTCTGAAGTGTCAACGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTTTCCTCTCCATGCCAGAGTCCAACCTTTCTGAAGTGTCAACGG  598

seq1  TGAGCAAGAGATAAGCTAACTGGCCAAGAGGATAGTAGGTGATAGGAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGAGATAAGCTAACTGGCCAAGAGGATAGTAGGTGATAGGAATT  648

seq1  GGTTCATGAGGGGAACTGCCAGTGAAGGACCCTGGAGAAAGGCTGGAAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATGAGGGGAACTGCCAGTGAAGGACCCTGGAGAAAGGCTGGAAGT  698

seq1  TGGCCAGATCTGGTGTGAATGGGAGGGAGAATGTCTGCTCCCTCACTGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGATCTGGTGTGAATGGGAGGGAGAATGTCTGCTCCCTCACTGGC  748

seq1  CAGGTTGACACCCCTGCAATGCCCCTGTGTTCTAGTGTATTGTAACTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGACACCCCTGCAATGCCCCTGTGTTCTAGTGTATTGTAACTAAT  798

seq1  GCCCTCAACGATTCTGAGAAGGGTGGCTGAGGGCTCTCCAGGGATCAGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCAACGATTCTGAGAAGGGTGGCTGAGGGCTCTCCAGGGATCAGGA  848

seq1  GAAAGGGGCCTGTCAGAAGTCATGACCCGAAGATCAAAATAATATAAGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGCCTGTCAGAAGTCATGACCCGAAGATCAAAATAATATAAGTT  898

seq1  GTGAGGAATGGAAAGGGCATCAGGAAAGAAAAAGGAAGCTAGTGTCCCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAATGGAAAGGGCATCAGGAAAGAAAAAGGAAGCTAGTGTCCCTG  948

seq1  AATGTGGGCACCAACAGGCAGTTACAAGACTCCGGTTTTAGCTGTGGGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGGCACCAACAGGCAGTTACAAGACTCCGGTTTTAGCTGTGGGGG  998

seq1  CTGAAAGAATTC  1011
      ||||||||||||
seq2  CTGAAAGAATTC  1010