BAC Information

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BAC

Clone NameB6Ng01-283H20
Chromosome4 (Build37)
Map Location 61,214,723 - 61,217,178
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234, LOC100039089, LOC667239, LOC100039116, LOC667242, LOC100039150, LOC100039019, LOC100039177, LOC621093
Downstream geneLOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283H20.bB6Ng01-283H20.g
ACCGA082438GA082439
length1,1841,156
definitionB6Ng01-283H20.b B6Ng01-283H20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccaataaa
atccaagtctagacaaggactagacaaggctgcccactttctccctacct
tttcaacatagtacttgaagtattagccagagcaattcgacaacaaaagg
agatcaaggggatacaaattggaaaagaggaagtcaaaatatcacttttt
gcagatgatatgatagtatatataagtgaccctaaaaattctaccagaga
actcctaaacctgataaacagcttcggtgaagtagctggatataaaataa
actcaaacaagtcaatggcctttctctatacaaagaataaacaggctgag
aaagaaattagggaaacaacacccttctcaatagtcacaaataatataaa
atatcttggcgtgactctaactaaggaggtgaaagatctgtatgataaaa
acttcaaatctctgaagaaagaaattaaagaagatctcagaagatggaaa
gatctcccatgctcatggattggcaggatcaacattgtaaaaatggctat
cttgccaaaagcaatctacagattcaatgcaatccccatcaaaattccaa
ctcaattcttcaacgaattggaaggagcaatttgcaaatttgtctggaat
aacaaaaaacctaggatagcaaaaagtcttctcaaggataaaagaacttc
tggcggaatcaccatgccagacctaaagctttactacagagcaattgtga
taaaaactgcatggtactggtatagagacagacaagtagaccaatggaat
agaattgaagatccagaaatgaacccacacacctatggtcacttgatctt
cgacaagggagctaaaaccatccagtggaagaaagacagcattttcaaca
attgggtgctggcacaactgggttgttatcgtgtagaagaatgcgaatcg
atccatacttatctctgtactaggtcaaatctagtggatcaggaactcac
ataaaacagagacactgaaacttataggaggagaagtgggggaaaggctg
aagaatatggcacagggaaaatctgaacggacgcatgcttggatctgtaa
gatcggagaactgacaaatgggacctaatgaaat
gaattcttggtatttctgttagtagattagctgaactatatagtctgtaa
gccattctaataaacaattcacatacatgctgtaaggtttactcttctag
agaaccccacctaacacaatactacaaaggcattaacatttgatttggaa
tgggtaagaagtaatgaaggcatttggaaaggaactggaataggaaaaat
gtgtgatgccgcataagatgagacaaaatgtctaacccaaaaggaccaat
aacagtttcctatggagaaagagctcagactatctaaggtaacttcagta
gaagaatctaagcttggagataggggtttagcctgctggccgtgagtggt
aacttggttatcgtgacaccataggttcaatccttagcagttgaagaaca
aaagaatatgactcacagattaaaagactagtaaccaaaggttttcattg
taaggttagcttgaaacatttgtaatgaaaaatgagattaatcttttaaa
gtagattaaccatggatcctttggagctggagttacagatggttgtgggc
taccatgtgggtgccataaaccaaacctaagtcctcggaaggaacagcct
gtgcttttaactgatgatgcatctctccagtcccctgatttgttatttat
atttatttgctatttatacgtttttagatttattttatgtgtataaaagt
tttggctgcatgtatgtctattacatacatgactcatccctgaggagtca
gaaaaaggtcccagatcttgtagaactggaggtgtagatggttttgagct
atcaagtgtatgctggaaactgaattcaggtcgtatgtgagggcatcaag
tgctcttaacactgagctacctctccagactcaatttttctatttttaaa
agggactataatgagcacatgttctgtgctataactctccagctactctc
ttccaaattatacatacaaatgtaatatacatacaaatgtatatgtatac
atgcagcacaaacctaacaggcacaaacagaggacgccccctgcagtggg
gcttgtaggagacagcgcaacactcagcttagccagttagagggccacgt
gccttgctacacttgcactgtgaatgctcaacaatttctttaaggcttca
ttcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_61214723_61217178
seq2: B6Ng01-283H20.g_65_1220

seq1  GAATTCTTGGTATTTCTGTTAGTAGATTAGCTGAACTATATAGTCTGTAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  GCCATTCTAATAAACAATTCACATACATGCTGTAAGGTTTTCTCTTCTAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGAACCCCACCTAACACAATATTACAAAGGCATTAACATTTGATTTGGAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGTAAGAAGTAATGAAGGCATTTGGAAAGGAACTGGATATTCCTCAGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  TGAGAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTG  250
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGT  300
                                                        
seq2  --------------------------------------------------  0

seq1  CCCCTATCTGATTTAGGATAGGTGAAGATCCTTTCCCAATCTGTTGGTGG  350
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT  400
                                                        
seq2  --------------------------------------------------  0

seq1  TCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCT  450
                                                        
seq2  --------------------------------------------------  0

seq1  GTTCTGTTCAGGAATTTTTCCCCTGTGCCCATGTCTTCAAGGCTTTTCCC  500
                                                        
seq2  --------------------------------------------------  0

seq1  CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCT  550
                                                        
seq2  --------------------------------------------------  0

seq1  TGATCCACTTAGATTTGACCTTAGCACAAGGAGATAAGTATGGATCGATT  600
                                                        
seq2  --------------------------------------------------  0

seq1  TGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAA  650
                                                        
seq2  --------------------------------------------------  0

seq1  AATGCTGTCTTTCTTCCACTGGATGGTTTTGGCTCCCTTGTCAAAGATCA  700
                                                        
seq2  --------------------------------------------------  0

seq1  AGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCAT  750
                                                        
seq2  --------------------------------------------------  0

seq1  TGGTCCACTTGTCTATCTCTATACCAGTACCATGCAGTTTTTATCACAAT  800
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTC  850
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTATCCTTGAGAAGAGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAG  900
                                                        
seq2  --------------------------------------------------  0

seq1  ATGAATTTGTAAATTGCTCCTTCTAATTCGTTGAAGAATTGAGTTGGAAT  950
                                                        
seq2  --------------------------------------------------  0

seq1  TTTGATGGGGATTGCATTGAATCTGTAGATTGCTTTTGGCAAGATAGCCA  1000
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTGACAATGTTGATCCTGCCAATCCATGAGCATGGGAGATCTCTCCAT  1050
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCTGAGATCTTCTTTAATTTCTTTCTTCAGGGACTTGAAGTTTTTATC  1100
                                                        
seq2  --------------------------------------------------  0

seq1  ATACAGATCTTTCACTTCCTTCGTTAGAGTCACGCCAAGATATTTTATAT  1150
                                                        
seq2  --------------------------------------------------  0

seq1  TATTTGTGACTATTGAGAAGGGTGTTGTTTCCCTAATTTCTTTCTCAGCC  1200
                                                        
seq2  --------------------------------------------------  0

seq1  TGTTTATTCTTTGTGTAGAGAAAGGCCATTGACTTGTTTGAGTTAATTTT  1250
                                                        
seq2  --------------------------------------------------  0

seq1  ATATCCAGCTACTTCACCGAAGCTGTTTATCAGGTTTAGGAGTTCTCTGG  1300
                                             || ||||    
seq2  ---------------------------------------GAATTCT----  7

seq1  TGGAATTT---TTAGGGTCACTTATATATACTATCATATCATCTGCAAAA  1347
      ||| ||||   |||  ||   |||  |  |||   ||||  |||| ||  
seq2  TGGTATTTCTGTTA--GTAGATTAGCTGAACT---ATATAGTCTGTAA--  50

seq1  AGTGATATTTTGACTTCCTCTTTTCCAATTTTATCCCCT-TGATCTCCTT  1396
         |  ||| | |    |  ||   ||  |  || |  |  | | | || 
seq2  ---GCCATTCTAATAAACAATT---CACATACATGCTGTAAGGTTTACTC  94

seq1  TTGTTGTCGAATTGC-TCTGGC-TAATACTTCAA--GTACT--------A  1434
      || | |  |||   |  ||  |  |||||| |||  | | |        |
seq2  TTCTAG-AGAACCCCACCTAACACAATACTACAAAGGCATTAACATTTGA  143

seq1  TGTTGAAAAGGTAGGGAG-AAAGTGGGCAGCCTTGTCTAGTCCCTGGAAA  1483
      | | |||  |||| | || || |  ||||   ||          ||||||
seq2  TTTGGAATGGGTAAGAAGTAATGAAGGCA---TT----------TGGAAA  180

seq1  GGAACTGGAATAGGAAAAATGTGTGATGCCACATAAAATGAGACAAAATG  1533
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  GGAACTGGAATAGGAAAAATGTGTGATGCCGCATAAGATGAGACAAAATG  230

seq1  TCTAACCCAAAAGGACCAATAACAGTTTCCTATGGAGAAAGAGCTCAGAC  1583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCCAAAAGGACCAATAACAGTTTCCTATGGAGAAAGAGCTCAGAC  280

seq1  TATCTAAGGTAACTTCAGTAGAAGAATCTAAGCTTGGAGATAGGGGTTTA  1633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAGGTAACTTCAGTAGAAGAATCTAAGCTTGGAGATAGGGGTTTA  330

seq1  GCCTGCTGGCCGTGAGTTGTAACTTGGTTATCGTGACACCATAGGTTCAA  1683
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCCTGCTGGCCGTGAGTGGTAACTTGGTTATCGTGACACCATAGGTTCAA  380

seq1  TCCTTAGCAGTTGAAGAACAAAAGAATATGACTCACAGATTAAAAGACTA  1733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAGCAGTTGAAGAACAAAAGAATATGACTCACAGATTAAAAGACTA  430

seq1  GTAACCAAAGCTTTTCATTGTAAGGTTAGCTTGAAACATTTGTAATGAAA  1783
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTAACCAAAGGTTTTCATTGTAAGGTTAGCTTGAAACATTTGTAATGAAA  480

seq1  AATGAGATTAATCTTTTAAAGTAGATTAACCATGGATCCTTTGGAGCTGG  1833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATTAATCTTTTAAAGTAGATTAACCATGGATCCTTTGGAGCTGG  530

seq1  AGTTACAGATGGTTGTGGGCTACCATGTGGGTGCCATAAACCAAACCTAA  1883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAGATGGTTGTGGGCTACCATGTGGGTGCCATAAACCAAACCTAA  580

seq1  GTCCTCGGAAGGAACAGCCTGTGCTTTTAACTGATGATGCATCTCTCCAG  1933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCGGAAGGAACAGCCTGTGCTTTTAACTGATGATGCATCTCTCCAG  630

seq1  TCCCCTGATTTGTTATTTATATTTATTTGCTATTTATACGTTTTTAGATT  1983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGATTTGTTATTTATATTTATTTGCTATTTATACGTTTTTAGATT  680

seq1  TATTTTATGTGTATAAGTGTTTTGGCTGCATGTATGTCTATCACATACAT  2033
      ||||||||||||||||  ||||||||||||||||||||||| ||||||||
seq2  TATTTTATGTGTATAAAAGTTTTGGCTGCATGTATGTCTATTACATACAT  730

seq1  GACTCATCCCTGAGGAGTCAGAAAAAGGTGCCAGATCTTGTAGAACTGGA  2083
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GACTCATCCCTGAGGAGTCAGAAAAAGGTCCCAGATCTTGTAGAACTGGA  780

seq1  GGTGTAGATGGTTGTGAGCTATCAAGTGTATGCTGGAAACTGAATTCAGG  2133
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGATGGTTTTGAGCTATCAAGTGTATGCTGGAAACTGAATTCAGG  830

seq1  TCGTATGTGAGGGCATCAAGTGCTCTTAACACTGAGCTACCTCTCCAGAC  2183
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATGTGAGGGCATCAAGTGCTCTTAACACTGAGCTACCTCTCCAGAC  880

seq1  TCAATTTTTCTATTTTTAAAAGGGACTATAATGAGCACATGTTCTGTGCT  2233
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTTCTATTTTTAAAAGGGACTATAATGAGCACATGTTCTGTGCT  930

seq1  ATAACTCTCCAGCTACTCTCTT-CAAATTATACATACAAATGTAATATAC  2282
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATAACTCTCCAGCTACTCTCTTCCAAATTATACATACAAATGTAATATAC  980

seq1  ATACAAATGTAATATGTATACATAGAGCACAAACCTAACAGGCACAAACA  2332
      |||||||||| ||||||||||||  |||||||||||||||||||||||||
seq2  ATACAAATGT-ATATGTATACATGCAGCACAAACCTAACAGGCACAAACA  1029

seq1  GAGGAC-ACCCCTGCAGTGGGGC-TGTAGGAGACAGCGCAACACTCAGCT  2380
      ||||||  ||||||||||||||| ||||||||||||||||||||||||||
seq2  GAGGACGCCCCCTGCAGTGGGGCTTGTAGGAGACAGCGCAACACTCAGCT  1079

seq1  TGGCCAG-TAGAGGGCAACCGTGCCTTTGCTACACTTGCACTGTGAGTAC  2429
      | ||||| |||||||| | |||||| |||||||||||||||||||| | |
seq2  TAGCCAGTTAGAGGGCCA-CGTGCC-TTGCTACACTTGCACTGTGAATGC  1127

seq1  TCAACCAATTTCTT--AAGCTTCA-TCATA  2456
      |||| |||||||||  | |||||| |||||
seq2  TCAA-CAATTTCTTTAAGGCTTCATTCATA  1156