BAC Information

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BAC

Clone NameB6Ng01-284E20
Chromosome4 (Build37)
Map Location 29,042,211 - 29,165,366
singlet/doubletdoublet
Overlap geneLOC100040811
Upstream geneLOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7, LOC100040907
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284E20.bB6Ng01-284E20.g
ACCGA083038GA083039
length1,1601,005
definitionB6Ng01-284E20.b B6Ng01-284E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,042,211 - 29,043,352)(29,164,366 - 29,165,366)
sequence
gaattcttaagtgttgtctattactgtgataatgatataactacaaagag
aaagttgggaatgaaagggcttattttgcttaaatatcctgaacacactt
cagcattaataagggaagccaaagcaggtaccaggagacaggaactgaaa
tggaggtaatacagactctgctcactggcttcctccccatggctaactca
gcctgtttcttgcacatcctaggaacacttcccaggtaggctggacactt
ccatctcaaaggttagtcaagaaaatgcccccagaagtgtacctacagga
caatgtgatggagaaaattgaggtaccctgtttgcagacatgtctaggtt
tgtgtaaagttgaagaaaccaacctgctaagctgaacaaagacctgaatg
catgcaaaagcacagacacgtggttcactgggaggaaaacattccaggtt
atagaaacagtatggtcacacatggattaaggagagttcagggaaaacag
agtttggagtcctgtagaaagtgtggacaaagagaaagtggaagagcccc
ctttcaatcgttgctaggaaatcaggcttcaagtaaagcagaaaccactg
tgggtgtttaatagagttttgatcgtatctgccccaagccatctggtcca
gattgttttgtttggactaatcctgatgaaatacctgaagactactccat
taattcaggtggcgaaatgatacctttcctaggtgggttggtgctaatgt
caacgagaagaaacattgctgaatataatttaaagataaaaccgaattgt
tgctaggaaaagaggaagttaaagactgagcaaaacagagatgtatcatg
ggtgatttggagggcttttttctggactttgaaggacagatatctgaact
tgctaaaacaagactgaaaggagagtagagagtttgaagaaaaggggttg
ggagtctggatcttgatacattaattttttgggtttttggtttttttttc
ccaagtgaaaaaggtatagcatgacaaccaaataaggaactgagccttct
agatggtgcctaggaattgttcttggagagagtgacatctaagccttata
tatactaactaggatgagatgtggtggtgagcagagaggacttattggga
attcactggg

gaattctggtattgtggttgatcctacacttacaatgaaaagtcagtctt
gtcagtgctatttttatgttggaaagtgaaggtcagattgactaaaacta
ctgctgctattggaaaaccttgtcggaaattaatttccttcctccgttct
ttaatgagaaactgtagcttggcttacactggttactctctcccttaaac
ctgataaaatagttctcataaaagagacggtgataagacctttccaacct
tatttttcactcttttatggaaaatgaaatttcttttctctgaagtgaat
tgatttcttatgtggcaaagtgatttatttttttctcttaaaggtgggtt
cttggaacgtggccaaaacttgcattcttactttttgggaaattctctga
gaggtggaatgtatgagagctgaatgaattgtttacttagtgtaactgtg
tcacatttttgctccaacttagtcctagggcatatgagctttccttgaca
aatcagtgagctatgggacatcaactcaggtacctccaaagccacaaacc
tgcagctactgtggatacgaacttgaaaatttcaacaatttgtagcagca
ttacttaatggctgacttcatttcagtttcttaaaaggtctgtttgaaac
cctcttcagactgagtatatgggacttatgattgttttatggatatatga
tgattggccgaagaattctctcagggataagggcacttactatgtaagca
tggcagcctggctatccccaacacccacagaaagagccgagcataaccac
atgcatcgtgtcaggcagagagagaaagattactgagattgttggcctct
gaaaagctccaatttctgtgagagactttgggctctctcaagggacttag
agggagagtgagagaaagatactcaatgtcctcctctgacctctgcacat
gttcatagtaatatatgctacacacagagaagagagaagagggggggggg
ggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_29042211_29043352
seq2: B6Ng01-284E20.b_47_1206

seq1  GAATTCTTAAGTGTTGTCTATTACTGTGATAATGATATAACTACAAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGTGTTGTCTATTACTGTGATAATGATATAACTACAAAGAG  50

seq1  AAAGTTGGGAATGAAAGGGCTTATTTTGCTTAAATATCCTGAACACACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGGGAATGAAAGGGCTTATTTTGCTTAAATATCCTGAACACACTT  100

seq1  CAGCATTAATAAGGGAAGCCAAAGCAGGTACCAGGAGACAGGAACTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATTAATAAGGGAAGCCAAAGCAGGTACCAGGAGACAGGAACTGAAA  150

seq1  TGGAGGTAATACAGACTCTGCTCACTGGCTTCCTCCCCATGGCTAACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTAATACAGACTCTGCTCACTGGCTTCCTCCCCATGGCTAACTCA  200

seq1  GCCTGTTTCTTGCACATCCTAGGAACACTTCCCAGGTAGGCTGGACACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTTCTTGCACATCCTAGGAACACTTCCCAGGTAGGCTGGACACTT  250

seq1  CCATCTCAAAGGTTAGTCAAGAAAATGCCCCCAGAAGTGTACCTACAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCAAAGGTTAGTCAAGAAAATGCCCCCAGAAGTGTACCTACAGGA  300

seq1  CAATGTGATGGAGAAAATTGAGGTACCCTGTTTGCAGACATGTCTAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGATGGAGAAAATTGAGGTACCCTGTTTGCAGACATGTCTAGGTT  350

seq1  TGTGTAAAGTTGAAGAAACCAACCTGCTAAGCTGAACAAAGACCTGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAAGTTGAAGAAACCAACCTGCTAAGCTGAACAAAGACCTGAATG  400

seq1  CATGCAAAAGCACAGACACGTGGTTCACTGGGAGGAAAACATTCCAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAAAGCACAGACACGTGGTTCACTGGGAGGAAAACATTCCAGGTT  450

seq1  ATAGAAACAGTATGGTCACACATGGATTAAGGAGAGTTCAGGGAAAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAACAGTATGGTCACACATGGATTAAGGAGAGTTCAGGGAAAACAG  500

seq1  AGTTTGGAGTCCTGTAGAAAGTGTGGACAAAGAGAAAGTGGAAGAGCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGAGTCCTGTAGAAAGTGTGGACAAAGAGAAAGTGGAAGAGCCCC  550

seq1  CTTTCAATCGTTGCTAGGAAATCAGGCTTCAAGTAAAGCAGAAACCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATCGTTGCTAGGAAATCAGGCTTCAAGTAAAGCAGAAACCACTG  600

seq1  TGGGTGTTTAATAGAGTTTTGATCGTATCTGCCCCAAGCCATCTGGTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTTAATAGAGTTTTGATCGTATCTGCCCCAAGCCATCTGGTCCA  650

seq1  GATTGTTTTGTTTGGACTAATCCTGATGAAATACCTGAAGACTACTCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTTTGTTTGGACTAATCCTGATGAAATACCTGAAGACTACTCCAT  700

seq1  TAATTCAGGTGGCGAAATGATACCTTTCCTAGGTGGGTTGGTGCTAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAGGTGGCGAAATGATACCTTTCCTAGGTGGGTTGGTGCTAATGT  750

seq1  CAACGAGAAG-AACATTGCTGAATATAATTTAAAGATAAAACCGAATTGT  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAACGAGAAGAAACATTGCTGAATATAATTTAAAGATAAAACCGAATTGT  800

seq1  TGCTAGGAAAAGAGGAAGTTAAAGACTGAGCAAAACAGAGATGTATCATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGAAAAGAGGAAGTTAAAGACTGAGCAAAACAGAGATGTATCATG  850

seq1  GGTGATTTGGAGGGC-TTTTTCTGGACTTTGAAGGACAGATATCTG-ACT  897
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  GGTGATTTGGAGGGCTTTTTTCTGGACTTTGAAGGACAGATATCTGAACT  900

seq1  TGCTAAAACAAGACTGAAAGGAGAGTAGAGAGTTTGAAGAAAAGGG--TT  945
      ||||||||||||||||||||||||||||||||||||||||||||||  | 
seq2  TGCTAAAACAAGACTGAAAGGAGAGTAGAGAGTTTGAAGAAAAGGGGTTG  950

seq1  GGAGTCTGGATCTTGATACATTAGTTTTTT-GGTTTTTGGTTTTTTTTTC  994
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  GGAGTCTGGATCTTGATACATTAATTTTTTGGGTTTTTGGTTTTTTTTTC  1000

seq1  CCAAGTG-AAAAGGTAGAGCATGACAAACCAAATA--GGACTGAGC--TC  1039
      ||||||| |||||||| |||||||| |||||||||  | |||||||  ||
seq2  CCAAGTGAAAAAGGTATAGCATGAC-AACCAAATAAGGAACTGAGCCTTC  1049

seq1  TAGATGTTGCC-AGGAATTGTCTTTGGAGAG-TTGACATCTTAAGCC---  1084
      |||||| |||| |||||||||  ||||||||  ||||||| ||||||   
seq2  TAGATGGTGCCTAGGAATTGTTCTTGGAGAGAGTGACATC-TAAGCCTTA  1098

seq1  TATATACTAACTAGGATGAGGATGTGGT-GTGAGCAGAGAGGACT--ATG  1131
      ||||||||||||||||||| |||||||| ||||||||||||||||   ||
seq2  TATATACTAACTAGGATGA-GATGTGGTGGTGAGCAGAGAGGACTTATTG  1147

seq1  GGA--TCACTGGG  1142
      |||  ||||||||
seq2  GGAATTCACTGGG  1160


seq1: chr4_29164366_29165366
seq2: B6Ng01-284E20.g_69_1073 (reverse)

seq1  --TCTCCCCCCCCCCTC-TCTCTC-TCTCTGTGTGTAGGCATATATTACT  46
        || |||||||||||| |||||| |||||||||||| ||||||||||||
seq2  TCTCCCCCCCCCCCCTCTTCTCTCTTCTCTGTGTGTA-GCATATATTACT  49

seq1  ATGAACATGTGCAGAGGTCAGAGGAGGACATTGAGTATCTTTCTCTCACT  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATGTGCAGAGGTCAGAGGAGGACATTGAGTATCTTTCTCTCACT  99

seq1  CTCCCTCTAAGTCCCTTGAGAGAG-CCAAAGTCTCTCACAGAAATTGGAG  145
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTCCCTCTAAGTCCCTTGAGAGAGCCCAAAGTCTCTCACAGAAATTGGAG  149

seq1  CTTTTCAGAGGCCAACAATCTCAGTAATCTTTCTCTCTCTGCCTGACACG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGAGGCCAACAATCTCAGTAATCTTTCTCTCTCTGCCTGACACG  199

seq1  ATGCATGTGGTTATGCTCGGCTCTTTCTGTGGGTGTTGGGGATAGCCAGG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTGGTTATGCTCGGCTCTTTCTGTGGGTGTTGGGGATAGCCAGG  249

seq1  CTGCCATGCTTACATAGTAAGTGCCCTTATCCCTGAGAGAATTCTTCGGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGCTTACATAGTAAGTGCCCTTATCCCTGAGAGAATTCTTCGGC  299

seq1  CAATCATCATATATCCATAAAACAATCATAAGTCCCATATACTCAGTCTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATCATATATCCATAAAACAATCATAAGTCCCATATACTCAGTCTG  349

seq1  AAGAGGGTTTCAAACAGACCTTTTAAGAAACTGAAATGAAGTCAGCCATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGTTTCAAACAGACCTTTTAAGAAACTGAAATGAAGTCAGCCATT  399

seq1  AAGTAATGCTGCTACAAATTGTTGAAATTTTCAAGTTCGTATCCACAGTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATGCTGCTACAAATTGTTGAAATTTTCAAGTTCGTATCCACAGTA  449

seq1  GCTGCAGGTTTGTGGCTTTGGAGGTACCTGAGTTGATGTCCCATAGCTCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGGTTTGTGGCTTTGGAGGTACCTGAGTTGATGTCCCATAGCTCA  499

seq1  CTGATTTGTCAAGGAAAGCTCATATGCCCTAGGACTAAGTTGGAGCAAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTGTCAAGGAAAGCTCATATGCCCTAGGACTAAGTTGGAGCAAAA  549

seq1  ATGTGACACAGTTACACTAAGTAAACAATTCATTCAGCTCTCATACATTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACACAGTTACACTAAGTAAACAATTCATTCAGCTCTCATACATTC  599

seq1  CACCTCTCAGAGAATTTCCCAAAAAGTAAGAATGCAAGTTTTGGCCACGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTCAGAGAATTTCCCAAAAAGTAAGAATGCAAGTTTTGGCCACGT  649

seq1  TCCAAGAACCCACCTTTAAGAGAAAAAAATAAATCACTTTGCCACATAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAACCCACCTTTAAGAGAAAAAAATAAATCACTTTGCCACATAAG  699

seq1  AAATCAATTCACTTCAGAGAAAAGAAATTTCATTTTCCATAAAAGAGTGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATTCACTTCAGAGAAAAGAAATTTCATTTTCCATAAAAGAGTGA  749

seq1  AAAATAAGGTTGGAAAGGTCTTATCACCGTCTCTTTTATGAGAACTATTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGGTTGGAAAGGTCTTATCACCGTCTCTTTTATGAGAACTATTT  799

seq1  TATCAGGTTTAAGGGAGAGAGTAACCAGTGTAAGCCAAGCTACAGTTTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGTTTAAGGGAGAGAGTAACCAGTGTAAGCCAAGCTACAGTTTCT  849

seq1  CATTAAAGAACGGAGGAAGGAAATTAATTTCCGACAAGGTTTTCCAATAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAGAACGGAGGAAGGAAATTAATTTCCGACAAGGTTTTCCAATAG  899

seq1  CAGCAGTAGTTTTAGTCAATCTGACCTTCACTTTCCAACATAAAAATAGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTAGTTTTAGTCAATCTGACCTTCACTTTCCAACATAAAAATAGC  949

seq1  ACTGACAAGACTGACTTTTCATTGTAAGTGTAGGATCAACCACAATACCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACAAGACTGACTTTTCATTGTAAGTGTAGGATCAACCACAATACCA  999

seq1  GAATTC  1001
      ||||||
seq2  GAATTC  1005


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