BAC Information

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BAC

Clone NameB6Ng01-285E08
Chromosome4 (Build37)
Map Location 145,959,732 - 145,960,715
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093
Downstream geneOTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285E08.bB6Ng01-285E08.g
ACCGA083762GA083763
length9981,183
definitionB6Ng01-285E08.b B6Ng01-285E08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctaagcccacctacttatgggccttttaattaattagcttcc
cacttcttcacagcaatgtttggtgttttgaatttttgcttgcttgcttg
cttgcttgcttgcttattcgtttctttgcttttaatttgtctttttctta
aactcatctaatcgtgcaggaatcccacactccccatcaggaaccactcc
tccaactctgttgcaggctgccttccacacaacttcccaggacctactct
gcaaagcttcttcacaaagttgctgccagactagaccagagctggatgta
gtaggacactgcacctgggttctgaacccttcagatacaatggatcctgt
ctaacttctcatattgtgcgtgtagccctctggactataaatgcacaaaa
ttaagcagtccctttgaattctgatgctcagaacagatacccaaaacaaa
caaaaacgtagataaaatgtccttggctcaaaccacaaaccatagaggta
tcttataaggagcacaatttatgtgatatccaagacaaaggatggaaaac
ccacagtcatgatcaaggacattaaagtttgtaaacctgtgaatccactc
agacaggaacaaaatgaatcttggtcaagaaaataacaccagatgcctga
aggaaataaggacaatataaaatattaaaattatgttcaataggtgcata
gaaatgccacaaaaaaaatcctgaagagaaaatgcagtgaggcgaataaa
aatgatacatagagaacctgtgggagacagattatcagacttaaagaaaa
agtagaggaggtggatgcctcaatcaaagaaaatggtgaattaaaatgat
gttaggtcaagggacaatattatttactgcttgaaaggatgaggcaataa
agagaaactcctttggaaaactgtcctgatctttgtcacaaaaaaaaaag
taagaaagggagaagaagaaagtaacgaagaacgaaagaaagaaagaa
gaattcatacaggagagaaaccttacaaatgtaatgaatgtgacaaatgc
tttactgacaaaggcagtctgagagttcatcagagaattcatacaggaga
gaaaccttacaaatgcagtgagtgtgacaaatgctttaccaaaccatccc
atcttagtattcatcgtagaattcattcaggagagaaaccttacaaatgt
agtgaatgcgacaaatgctttacccaaccatcccctctcagtattcatcg
tagaattcattcaggagagaaaccttacaaatgtagtgaatgcgacaaat
gctttactgacaaaggcagtctcagagttcatcagagaattcatatagga
gagaaaccgtacaaatgcagtgagtgtgacaaatgctttacccaaccatc
ccatcttagtattcattgtagaattcattcaggagagaaaccttacaaat
gtagtgaatgtgacaaatgctttactcacaaaggctctctgagagttcat
catagaattcatgcaggagagaaaccttacaaatgtagtgaatgtgacaa
atgttttactgagaaaaacggtctgagaaggcatcagagaattcatacag
gagagaaaccttataaatgcagtgaatgtgacaaatgctttacccgaaaa
tcacatcttagtattcatcagagaattcatacaggagagaaactgtacaa
atgcagtgaatgtgacaaatgctttacccaacaatgccatcttagtattc
atcagaaaattcattcaggagagaaccttacaaatgcaatgaatgcgaca
aatgctttagtgacaaacacagtctgagaaggcatcagagaattcataca
ggagagacaccttacaaatgtaatgaatgtgacaaatgcttttacctgaa
aatcacatcttagtattcatcagataattcatacaggagagaaaccttac
aaatgtaatgaatgttgacaaatccttttactgaaaatggctgtctgaga
atttcatcagaagaattcatacaggagagaaacctttacaatgtaatgaa
tgtgacaaatgcttacctgaaaatcacatcttagttattcatcagaatgt
catacaggaagagaaacctacgatgtatggatggtgaacaaatccttact
gaaaaatgtctcgtgctctgggagaaaaattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145959732_145960715
seq2: B6Ng01-285E08.b_47_1044 (reverse)

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTCCTTTC-------------CTTACT  37
      ||||||||||||||| |||||  || |||||             ||||||
seq2  TTCTTTCTTTCTTTCGTTCTTCGTTACTTTCTTCTTCTCCCTTTCTTACT  50

seq1  TTTTTTTTTGTGACAAAGATCAGGACAGTTTTCCAAAGGAGTTTCTCTTT  87
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGTGACAAAGATCAGGACAGTTTTCCAAAGGAGTTTCTCTTT  100

seq1  ATTGCCTCATCC-TTCAAGCAGTAAATAATATTGTCCCTTGACCTAACAT  136
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTCATCCTTTCAAGCAGTAAATAATATTGTCCCTTGACCTAACAT  150

seq1  CATTTTAATTCACCATTTTCTTTGATTGAGGCATCCACCTCCTCTACTTT  186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATTCACCATTTTCTTTGATTGAGGCATCCACCTCCTCTACTTT  200

seq1  TTCTTTAAGTCTGATAATCTGTCTCCCACAGGTTCTCTATGTATCATTTT  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAGTCTGATAATCTGTCTCCCACAGGTTCTCTATGTATCATTTT  250

seq1  TATTCGCCTCACTGCATTTTCTCTTCAGGATTTTTTTTGTGGCATTTCTA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGCCTCACTGCATTTTCTCTTCAGGATTTTTTTTGTGGCATTTCTA  300

seq1  TGCACCTATTGAACATAATTTTAATATTTTATATTGTCCTTATTTCCTTC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTATTGAACATAATTTTAATATTTTATATTGTCCTTATTTCCTTC  350

seq1  AGGCATCTGGTGTTATTTTCTTGACCAAGATTCATTTTGTTCCTGTCTGA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCTGGTGTTATTTTCTTGACCAAGATTCATTTTGTTCCTGTCTGA  400

seq1  GTGGATTCACAGGTTTACAAACTTTAATGTCCTTGATCATGACTGTGGGT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATTCACAGGTTTACAAACTTTAATGTCCTTGATCATGACTGTGGGT  450

seq1  TTTCCATCCTTTGTCTTGGATATCACATAAATTGTGCTCCTTATAAGATA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCCTTTGTCTTGGATATCACATAAATTGTGCTCCTTATAAGATA  500

seq1  CCTCTATGGTTTGTGGTTTGAGCCAAGGACATTTTATCTACGTTTTTGTT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATGGTTTGTGGTTTGAGCCAAGGACATTTTATCTACGTTTTTGTT  550

seq1  TGTTTTGGGTATCTGTTCTGAGCATCAGAATTCAAAGGGACTGCTTAATT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGGTATCTGTTCTGAGCATCAGAATTCAAAGGGACTGCTTAATT  600

seq1  TTGTGCATTTATAGTCCAGAGGGCTACACGCACAATATGAGAAGTTAGAC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATTTATAGTCCAGAGGGCTACACGCACAATATGAGAAGTTAGAC  650

seq1  AGGATCCATTGTATCTGAAGGGTTCAGAACCCAGGTGCAGTGTCCTACTA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCATTGTATCTGAAGGGTTCAGAACCCAGGTGCAGTGTCCTACTA  700

seq1  CATCCAGCTCTGGTCTAGTCTGGCAGCAACTTTGTGAAGAAGCTTTGCAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGCTCTGGTCTAGTCTGGCAGCAACTTTGTGAAGAAGCTTTGCAG  750

seq1  AGTAGGTCCTGGGAAGTTGTGTGGAAGGCAGCCTGCAACAGAGTTGGAGG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTCCTGGGAAGTTGTGTGGAAGGCAGCCTGCAACAGAGTTGGAGG  800

seq1  AGTGGTTCCTGATGGGGAGTGTGGGATTCCTGCACGATTAGATGAGTTTA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTCCTGATGGGGAGTGTGGGATTCCTGCACGATTAGATGAGTTTA  850

seq1  AGAAAAAGACAAATTAAAAGCAAAGAAACGAATAAGCAAGCAAGCAAGCA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGACAAATTAAAAGCAAAGAAACGAATAAGCAAGCAAGCAAGCA  900

seq1  AGCAAGCAAGCAAAAATTCAAAACACCAAACATTGCTGTGAAGAAGTGGG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAAGCAAAAATTCAAAACACCAAACATTGCTGTGAAGAAGTGGG  950

seq1  AAGCTAATTAATTAAAAGGCCCATAAGTAGGTGGGCTTAGAAGAATTC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAATTAATTAAAAGGCCCATAAGTAGGTGGGCTTAGAAGAATTC  998