BAC Information

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BAC

Clone NameB6Ng01-286C18
Chromosome4 (Build37)
Map Location 3,143,563 - 3,144,521
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039124, LOC100039141, EG666464
Downstream geneLOC100039044, LOC631371, LOC666513, Tmem68, Tgs1, Lyn, LOC621858, Rps20, Mos, Plag1, Chchd7, LOC666586, Rdhe2, 4833413O15Rik, Penk1, A830012C17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286C18.bB6Ng01-286C18.g
ACCGA084436GA084437
length1,224964
definitionB6Ng01-286C18.b B6Ng01-286C18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgtgaatcaaaacaaccttgatat
tccatctcacaccagtcagaatgactaagataaaaaaattcaggtgacag
cagatgctggtgaggaagtggagaaagaggaacactcctccattgttggt
ggaattgtaagctgtacaaccactctggaaatcagtctggaggttcctca
gaaaattggacatagtactactggaggatcctgcaatacctctcctgggt
gtatatccagaagatgttccaactggtaagaaagacacacgcttcactat
gttcatagcagccttatttataatagacagaagttggaaagaacacagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacataatg
gaatactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggaatgcatcatcctgagtgaggtaacccaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagcccagaaac
ttagaatacccaagatataagatacaatttgtgaaacacatggatctcaa
gaagaacgaagaccaaagtgtggacactttgccccttcttagaattggga
acaaaatacccatggaaggagttacagagacaaagtttggagctgagtca
aaaggatggaccatctagagactgccatgtccagggatccatctcataat
ctgccttcaaacgctgacaccattgcatacactagcaagattttgctgaa
aggaccctgatatagctgtctcctgtgagactatgcccggggcctagcaa
acacagaagtggatgctcacagtcagctattggatgaatcacagggcccc
caatggaagagctagtgaaagtgaaagaatcctgggtagaatgtaaaagg
tcataagaagccctgaaattggtaaaatagattttattgtagtagaactg
ctcattgatttagaaaatagaggtgcacaatgctttggccactcctcgaa
cctgtgtgttctggcatgtcttgaaccagtgtggtgccatgcaatcaata
gaatctcatggtaccctccatagccatttcttgaggaaatcaatccattt
tgcagaatggacacatttgtccta
gaattctatagacagccaaaggtggtgttaccataaatgtcggagatgca
actttttcaaatgcatgtgagtaaaagtagccatctaggacagaggtgat
gtatacatggagctgaaattagagctgttgtgagtcaccctgtgtaccag
gagttaaacttatcagcaaaggccaggaaatcgagtggggggggggggtc
cagtagagggattggaactacaggagatagtcagaggtgggagatttact
ctggacaaactccaaggaagattgacacaggaaatcaaggagaggtaatt
tgcctcttgtcagacatagtatagtttaagtgggttaaatatgttacaag
ctagacaggaaataagcctaagttgtggcctaggccttttacattaataa
taagcctccaagtaattattcaggaaatggtgtgtaggtgggaaagccca
tagttattttgtacttttaagactgcccccttacctcaacaaatcactag
catccatgctcaggggtttggtggcaatgtagctactgtcttagagaaaa
atccaatcctgtcttccctcctaagtggagtccttcaaagttggactaca
tgctgacagcagaagacagtgtcctgaggctgggcaagggtgctagaaaa
gggtgtgtgaatggagcaatggattactctggaagaatcagccagaaggc
ctgtgccagcacagaccagcatgggtcctgtagatttctcctaacagggc
ccttccttttgtgtgtttccagtgctcttgtaggcactgtggtccctgga
ggaggataccagagagtggagagcagtgtgctgaagatacagaccagacc
agaagagcacagagccaggtaggaattccaggtgactttgccatttggga
ggctctgttttaaattcacaggtttgaaagtagaggaaaagttgcttgat
ggcttttattctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_3143563_3144521
seq2: B6Ng01-286C18.g_66_1029

seq1  GAATTCTATAGACAGCCAAAGGTGGTGTTACCATAAATGTCGGAGATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGACAGCCAAAGGTGGTGTTACCATAAATGTCGGAGATGCA  50

seq1  ACTTTTTCAAATGCATGTGAGTAAAAGTAGCCATTGAGGACAGAGGTGAT  100
      ||||||||||||||||||||||||||||||||||  ||||||||||||||
seq2  ACTTTTTCAAATGCATGTGAGTAAAAGTAGCCATCTAGGACAGAGGTGAT  100

seq1  GTATACATGGAGCTGAAATTAGAGCTGTTGTGAGTCACCCTGTGTACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATGGAGCTGAAATTAGAGCTGTTGTGAGTCACCCTGTGTACCAG  150

seq1  GAGTTAAACTTATCAGCAAAGGCCAGGAAATCGAGTGGGGGAGGGGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||  ||||||| 
seq2  GAGTTAAACTTATCAGCAAAGGCCAGGAAATCGAGTGGGG--GGGGGGGG  198

seq1  TCCAGTAGAGGGATTGTAACTACAGGAGATAGTCAGAGGTGGGAGATTTA  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCAGTAGAGGGATTGGAACTACAGGAGATAGTCAGAGGTGGGAGATTTA  248

seq1  CTCTGGACAAACTCCAAGGAAGATTGACACAGGAAATCAAGGAGAGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGACAAACTCCAAGGAAGATTGACACAGGAAATCAAGGAGAGGTAA  298

seq1  TTTGCCTCTTGTCAGACATATTATAGTTTAAGTGGGTTAAATATGTTACA  350
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTTGCCTCTTGTCAGACATAGTATAGTTTAAGTGGGTTAAATATGTTACA  348

seq1  AGCTAGACAGGAAACAAGCCTAAGTTGTGGCCTAGGCCTTTTACATTAAT  400
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGCTAGACAGGAAATAAGCCTAAGTTGTGGCCTAGGCCTTTTACATTAAT  398

seq1  AATAAGCCTCCAAGTAATTATTCAGGAAATGGTGTGTAGGTGGGAAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATAAGCCTCCAAGTAATTATTCAGGAAATGGTGTGTAGGTGGGAAAGCC  448

seq1  CATAGTTATTTTGTACTTTTAAGACTGCCCCCTTACCTCAACAAATTACT  500
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATAGTTATTTTGTACTTTTAAGACTGCCCCCTTACCTCAACAAATCACT  498

seq1  AGCATCCATGCTCAGGGGTTTGGTGGCAATGTAGCTACTGTCTTAGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCATGCTCAGGGGTTTGGTGGCAATGTAGCTACTGTCTTAGAGAA  548

seq1  AAATCCAATCCTGTCTTCCCTCCTAAGTGGAGTCCTTCAAAGTTGGACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCAATCCTGTCTTCCCTCCTAAGTGGAGTCCTTCAAAGTTGGACTA  598

seq1  CATGCTGACAGCAGAAGACAGTGTCCTGAGGCTGGGCAAGGGTGCTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGACAGCAGAAGACAGTGTCCTGAGGCTGGGCAAGGGTGCTAGAA  648

seq1  AAGGGTGTGTGAACGGAGCAATGGATTACTCTGGCAGAATCAGCCTGAAG  700
      ||||||||||||| |||||||||||||||||||| |||||||||| ||||
seq2  AAGGGTGTGTGAATGGAGCAATGGATTACTCTGGAAGAATCAGCCAGAAG  698

seq1  GCCTGTGCCAGCACAGACCAGCATGGGTCCTGTAGATTTCTCCTAACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCCAGCACAGACCAGCATGGGTCCTGTAGATTTCTCCTAACAGG  748

seq1  GCCTTTCTTTTTGTGTGTTTCCAGTGCTTTTGTAGGCACTGTGGTCCCTG  800
      ||| ||| |||||||||||||||||||| |||||||||||||||||||||
seq2  GCCCTTCCTTTTGTGTGTTTCCAGTGCTCTTGTAGGCACTGTGGTCCCTG  798

seq1  GAGGATGATACCAGAGAGTGGAGAGCAGTGTGCTGAAGATACAGACCAGA  850
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGATACCAGAGAGTGGAGAGCAGTGTGCTGAAGATACAGACCAGA  848

seq1  CCAGAAGAGCACAGAGCCAGGTAGGAATTCCAGGTGACTTTGCCA-TTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCAGAAGAGCACAGAGCCAGGTAGGAATTCCAGGTGACTTTGCCATTTGG  898

seq1  GAGGCTCTGTTT--AAATCACAGG-TTGAAAGTAGAGGAAAAGTTGC-TG  945
      ||||||||||||  || ||||||| |||||||||||||||||||||| ||
seq2  GAGGCTCTGTTTTAAATTCACAGGTTTGAAAGTAGAGGAAAAGTTGCTTG  948

seq1  ATG--CTTTATTCTGC  959
      |||   ||||||||||
seq2  ATGGCTTTTATTCTGC  964