BAC Information

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BAC

Clone NameB6Ng01-287E12
Chromosome4 (Build37)
Map Location 121,603,298 - 121,724,926
singlet/doubletdoublet
Overlap geneLOC666931
Upstream geneZfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921, LOC666927
Downstream geneLOC666937, LOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287E12.bB6Ng01-287E12.g
ACCGA085249GA085250
length1,1281,013
definitionB6Ng01-287E12.b B6Ng01-287E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,603,298 - 121,604,442)(121,723,926 - 121,724,926)
sequence
gaattccagaacatttccccaactgagagtcaagggaagagctgcagaga
agatccaagttgaattgtagagcaacgtttcattcgcgttgcttactcgt
gttggacagcagatggcgcgcccgcctgcctgaacgccgggcaggtagca
ctctaagaacccggtggcgcgcgagggggcgtggcgcagtgcctctcacc
acctcatcggagaaacagcttccaagtgtgcatggaggaaggacgccaga
ttgcaggtggctaggagcagcctcgggggcccccctctgtattccttcct
agcgttgactgtagatgcggcatagcggtggagagatgcgcgtccctcag
ggtgcttggatgcggtgtgcgagcagagctcttggcaataagcacaaacc
acagaaacctgactgcaaatacttccacatgcaaaggaggaaactgaaac
cttcctgcatcatttaaaaggcacgaaagctggagatgtagttcagtggt
aaactcttgtctagcttatgtgagtgaggactaggttcaattccctgtac
tggcaaattcaaataaaataaaaccaaacgaaaagcatccaaatcaatca
atcaatcaatcaatcaatcattcaataacagtgaactccccatcaccagg
gctctaatttctgggccagaattctgcctgattttctgaaggccccatat
gctccatggaccccaggtaagaagtaagcctatatctgccaaatccctta
taagacaacctaataattataaactacactacattctctgggctctttat
tcccgcccaaaatgttggcagaatgtatagttccctggagaccatgccaa
ttattggaccacaaaaagggcattggcactaaaaattccagaggttataa
agtcaataacacctcagaggaaacactggtagaactgaagtctcagtgga
cacaaagtctcaggacctaaagttagagacacaaagaaaacaggaagtgg
tggggggatattgaaaaacatccaggttcagccagatcttaacttggaag
aggatcacttgctctctctggtggctgcagtgagtggtgtgacatccaac
tacttctacaagcatagctaccacagtg
gaattcagaaattcaaaatatttggtggatacaggttagaatagagaaca
gttgggataaagaagtaaaagttggcattggaaagaagtttagttcttca
gtccacatgtcttcagttcaattctaagcattaacttcgaagttcccaac
tatatataactataattacagagattcagacattctcttaaagatgcata
caggaaaaacatacacacacaaatataaataagagcaattgaaaaaagca
ggacctgtcttactaaatttccagaagaaaccaagtcttatctttcatgg
gaggtattgggcatctctgagacactgcactcctggaaaatacaaggtgg
ctgtcagctgtggtggtcagaatagaatatattaacaatcacttcacaga
tgaatctttttaataagtaatatatttcaaatcaacagatttatacgact
ttcctctgaaaaccctgaacattagtcttatcttcataaataagaaatca
agagtggctggggagatgtctcagtcattgaaattttaatgcaaatatgt
agaaatgagcctggattgtatggccttcttttttaaaaaaataaaaaata
aaaacgaaaagaaacagttccaagtagagtagtaatctggaatatcagca
ctgtggaggtacagacagaaggtctctaggactgccaatcattacatgta
gctttatattgagctcaaggttgagagattttcttgtcgtcgtcatcatc
atcatcatcatcatcatcatcatcatcatcatcatgttgtccagcagtac
acattaaacaaataaatatagtttaaaaattttaaatatccagtagttgg
tggcacagggctttaatcacagcacacctgagctaagtgtgacctgtata
tactgccatttccaggacagctagcaccacacagagaaaggttgcagaaa
tacagcaaaacaatacaaagagcctatccacaagttttattatttattta
tttatttattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_121603298_121604442
seq2: B6Ng01-287E12.b_42_1169

seq1  GAATTCCAGAACATTTCCCCAACTGAGAGTCAAGGGAAGAGCTGCAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACATTTCCCCAACTGAGAGTCAAGGGAAGAGCTGCAGAGA  50

seq1  AGATCCAAGTTGAATTGTAGAGCAACGTTTCATTCGCGTTGCTTACTCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAAGTTGAATTGTAGAGCAACGTTTCATTCGCGTTGCTTACTCGT  100

seq1  GTTGGACAGCAGATGGCGCGCCCGCCTGCCTGAACGCCGGGCAGGTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGACAGCAGATGGCGCGCCCGCCTGCCTGAACGCCGGGCAGGTAGCA  150

seq1  CTCTAAGAACCCGGTGGCGCGCGAGGGGGCGTGGCGCAGTGCCTCTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGAACCCGGTGGCGCGCGAGGGGGCGTGGCGCAGTGCCTCTCACC  200

seq1  ACCTCATCGGAGAAACAGCTTCCAAGTGTGCATGGAGGAAGGACGCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATCGGAGAAACAGCTTCCAAGTGTGCATGGAGGAAGGACGCCAGA  250

seq1  TTGCAGGTGGCTAGGAGCAGCCTCGGGGGCCCCCCTCTGTATTCCTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGTGGCTAGGAGCAGCCTCGGGGGCCCCCCTCTGTATTCCTTCCT  300

seq1  AGCGTTGACTGTAGATGCGGCATAGCGGTGGAGAGATGCGCGTCCCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTGACTGTAGATGCGGCATAGCGGTGGAGAGATGCGCGTCCCTCAG  350

seq1  GGTGCTTGGATGCGGTGTGCGAGCAGAGCTCTTGGCAATAAGCACAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTGGATGCGGTGTGCGAGCAGAGCTCTTGGCAATAAGCACAAACC  400

seq1  ACAGAAACCTGACTGCAAATACTTCCACATGCAAAGGAGGAAACTGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAACCTGACTGCAAATACTTCCACATGCAAAGGAGGAAACTGAAAC  450

seq1  CTTCCTGCATCATTTAAAAGGCACGAAAGCTGGAGATGTAGTTCAGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCATCATTTAAAAGGCACGAAAGCTGGAGATGTAGTTCAGTGGT  500

seq1  AAACTCTTGTCTAGCTTATGTGAGTGAGGACTAGGTTCAATTCCCTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTGTCTAGCTTATGTGAGTGAGGACTAGGTTCAATTCCCTGTAC  550

seq1  TGGCAAATTCAAATAAAATAAAACCAAACGAAAAGCATCCAAATCAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAATTCAAATAAAATAAAACCAAACGAAAAGCATCCAAATCAATCA  600

seq1  ATCAATCAATCAATCAATCATTCAATAACAGTGAACTCCCCATCACCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCAATCAATCAATCATTCAATAACAGTGAACTCCCCATCACCAGG  650

seq1  GCTCTAATTTCTGGGCCAGAATTCTGCCTGATTTTCTGAAGGCCCCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAATTTCTGGGCCAGAATTCTGCCTGATTTTCTGAAGGCCCCATAT  700

seq1  GCTCCATGGACCCCAGGTAAGAAGTAAGCCTATATCTGCCAAATCCCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATGGACCCCAGGTAAGAAGTAAGCCTATATCTGCCAAATCCCTTA  750

seq1  TAAGACAACCTAATAATTATAAACTACACTACATTCTCTGGGCTCTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAACCTAATAATTATAAACTACACTACATTCTCTGGGCTCTTTAT  800

seq1  TCCCGCCCAAAATGTTGGCAGAATGTATAGTTCCCTGGAGACCATGCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCCCAAAATGTTGGCAGAATGTATAGTTCCCTGGAGACCATGCCAA  850

seq1  TTATTGGACCACAAAAAGGGCATTGGCACTAAAAATTCCAGAGGTTATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGACCACAAAAAGGGCATTGGCACTAAAAATTCCAGAGGTTATAA  900

seq1  AGTCAATAACACCTCAGAGGAAACACTGGTAGAACTGAAGTCTCAGTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATAACACCTCAGAGGAAACACTGGTAGAACTGAAGTCTCAGTGGA  950

seq1  CACCAAAGTCTCAGGACCCTAAGGTTAGAAGACCACAAAGAAAACA-GAA  999
      || ||||||||||||| ||||| ||||| ||| ||||||||||||| |||
seq2  CA-CAAAGTCTCAGGA-CCTAAAGTTAG-AGA-CACAAAGAAAACAGGAA  996

seq1  GTGGTGGGGGGATA-TGAAAAACATCCAGGGTTCAGGCAGATCTTAAACT  1048
      |||||||||||||| ||||||||||||| ||||||| ||||||||||  |
seq2  GTGGTGGGGGGATATTGAAAAACATCCA-GGTTCAGCCAGATCTTAACTT  1045

seq1  TGAAGAGATCCACCTGCTTCTCCTTCCTGTGAGCTGCAAGGTGAGGTGGG  1098
       ||||||   ||| ||| ||||  ||  ||| ||||||  ||||   | |
seq2  GGAAGAGGATCACTTGC-TCTC--TCTGGTG-GCTGCA--GTGA---GTG  1086

seq1  GTGTGACATCCCAAAACTACTTTCTACAAGCATTAGCTACCACAGTG  1145
      |||||||||||   |||||| ||||||||||| ||||||||||||||
seq2  GTGTGACATCC---AACTAC-TTCTACAAGCA-TAGCTACCACAGTG  1128

seq1: chr4_121723926_121724926
seq2: B6Ng01-287E12.g_63_1053 (reverse)

seq1  AATAAAACCTTGTGGGATAGGGCTCTTTGTA-TGTTTTGCTGTTATTTCC  49
      ||||||| ||||| ||||| ||||||||||| |||||||||| ||||| |
seq2  AATAAAA-CTTGT-GGATA-GGCTCTTTGTATTGTTTTGCTG-TATTT-C  45

seq1  TGCAACCTTTCTCTGTGTGGTGCTAGCTGTCCTGGAAATGGCAGTATATA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGCAACCTTTCTCTGTGTGGTGCTAGCTGTCCTGGAAATGGCAGTATAT-  94

seq1  ACAGGTCACACTTAGCCTCAGGTGTGCTGTGATTAAAGCCCTGTGCCACC  149
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAGGTCACACTTAG-CTCAGGTGTGCTGTGATTAAAGCCCTGTGCCACC  143

seq1  AACTACTGGATATTTAAAATTTTTAAACTATATTTATTTGTTTAATGTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTGGATATTTAAAATTTTTAAACTATATTTATTTGTTTAATGTGT  193

seq1  ACCTGCTGGACAACATGATGATGATGATGATGATGATGATGATGATGATG  249
      | ||||||||||||   |||||||||||||||||||||||||||||||||
seq2  A-CTGCTGGACAAC---ATGATGATGATGATGATGATGATGATGATGATG  239

seq1  ATGATGATGACGACGACAAGAAAATCTCTCAACCTTGAGCTCAATATAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGATGACGACGACAAGAAAATCTCTCAACCTTGAGCTCAATATAAA  289

seq1  GCTACATGTAATGATTGGCAGTCCTAGAGACCTTCTGTCTGTACCTCCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATGTAATGATTGGCAGTCCTAGAGACCTTCTGTCTGTACCTCCAC  339

seq1  AGTGCTGATATTCCAGATTACTACTCTACTTGGAACTGTTTCTTTTCGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGATATTCCAGATTACTACTCTACTTGGAACTGTTTCTTTTCGTT  389

seq1  TTTATTTTTTATTTTTTTAAAAAAGAAGGCCATACAATCCAGGCTCATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTATTTTTTTAAAAAAGAAGGCCATACAATCCAGGCTCATTT  439

seq1  CTACATATTTGCATTAAAATTTCAATGACTGAGACATCTCCCCAGCCACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATTTGCATTAAAATTTCAATGACTGAGACATCTCCCCAGCCACT  489

seq1  CTTGATTTCTTATTTATGAAGATAAGACTAATGTTCAGGGTTTTCAGAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTTCTTATTTATGAAGATAAGACTAATGTTCAGGGTTTTCAGAGG  539

seq1  AAAGTCGTATAAATCTGTTGATTTGAAATATATTACTTATTAAAAAGATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCGTATAAATCTGTTGATTTGAAATATATTACTTATTAAAAAGATT  589

seq1  CATCTGTGAAGTGATTGTTAATATATTCTATTCTGACCACCACAGCTGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGAAGTGATTGTTAATATATTCTATTCTGACCACCACAGCTGAC  639

seq1  AGCCACCTTGTATTTTCCAGGAGTGCAGTGTCTCAGAGATGCCCAATACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCTTGTATTTTCCAGGAGTGCAGTGTCTCAGAGATGCCCAATACC  689

seq1  TCCCATGAAAGATAAGACTTGGTTTCTTCTGGAAATTTAGTAAGACAGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGAAAGATAAGACTTGGTTTCTTCTGGAAATTTAGTAAGACAGGT  739

seq1  CCTGCTTTTTTCAATTGCTCTTATTTATATTTGTGTGTGTATGTTTTTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTTTTCAATTGCTCTTATTTATATTTGTGTGTGTATGTTTTTCC  789

seq1  TGTATGCATCTTTAAGAGAATGTCTGAATCTCTGTAATTATAGTTATATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCATCTTTAAGAGAATGTCTGAATCTCTGTAATTATAGTTATATA  839

seq1  TAGTTGGGAACTTCGAAGTTAATGCTTAGAATTGAACTGAAGACATGTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGGAACTTCGAAGTTAATGCTTAGAATTGAACTGAAGACATGTGG  889

seq1  ACTGAAGAACTAAACTTCTTTCCAATGCCAACTTTTACTTCTTTATCCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGAACTAAACTTCTTTCCAATGCCAACTTTTACTTCTTTATCCCA  939

seq1  ACTGTTCTCTATTCTAACCTGTATCCACCAAATATTTTGAATTTCTGAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTCTCTATTCTAACCTGTATCCACCAAATATTTTGAATTTCTGAAT  989

seq1  TC  1001
      ||
seq2  TC  991