BAC Information

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BAC

Clone NameB6Ng01-287M05
Chromosome4 (Build37)
Map Location 144,468,246 - 144,468,820
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844
Downstream geneDhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287M05.bB6Ng01-287M05.g
ACCGA085599GA085600
length1,001568
definitionB6Ng01-287M05.b B6Ng01-287M05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaagcccatggtctgctcaaggactttctaggacattggaacat
tggaataggcttagctatgtcagaattcaatcttaaaaggcacttataat
aagataatactaagagagcacgtggatccatacaccagactaatgtggga
atagggtttgagtatatgagttaaagagaacgccagacatcgggaggtga
gttttcatgaaactctctgcctcgtgagtagcttccaggcctctcggcct
gtcaagctgactcaaccagagtgtgtagcattattgaaaaaatatttttt
ttcgtttgcaaatcttttttttcttttttttattacgtattttcttcaat
tacatttccaatgctatcccaaaagtccccccccccgactcccctaccca
cccattcccattttttggccctggcattcccctgtactggggcatataac
gtttgcctgaccaatgggcctctctttccagtgatggccgactaggtcat
cttttgatacatatgcagctagagacaagagctccggggtactggttagt
tcataacgttgttcctccgatagggttgcagatctctttagctccttgga
tactttctctagctcctccattgggggccctgtgatccatccaatagttg
actgtgagcatccacttctgtgtttgctaggccccggcctagtctcacaa
gggacagctatatcaccgtccttgcaacaaaggcttgctagtgtatgcaa
tggtgtcatcccttggaggctaattatgggatggatacctggatatggca
gtctctagatggaccatccttttgtctcagctccaaactttgtctctgta
actcctccatgagtgattgtttccaattctaagaatgagcaaagtgtcca
cttcccctttcccaattcccccccaaagaaaactctatccatttccctcc
tctacttctatgaggatggacccccacccaccaacccatttctgcctccc
t
aggccctctggaagagcagccagtgctctttaccactgagccatctctcc
agccccctctagaggtatcttggatggacctacaatctgataagataaaa
ctctggtcacaaggggctaagacatatcttgatctttaaatggctttcct
gttaagtttgatggtatagagatactacttctgttttcctgtgtgtgtat
gtgtgtgtgtgtgtgtgtgtgtgtttggcacatgtatgtttaggtgtgct
tgccctcaaaagcacatgtggaggccagaggttggcttcaggatagcttt
ctttaccacttctccacgttaaattttgagatagggtctcttcagtggac
ttggagtatgccatttcagctaggctggctggcccctagagtcctcctat
gtcctcagtgctaggattatcggatgtgcccactataccttggtagctca
cagctttacagccgtgtgtcctccagctcctgtgtatttgatatatgtgt
caggcctccatgaacacttgcactcatgcatgtgtgcaatgtatccatgt
tctgccacaccgctgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144468246_144468820
seq2: B6Ng01-287M05.g_68_641 (reverse)

seq1  CCCCAGCGGTGTGGCAGAACATGGATACATTGCACACATGCATGAGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCGGTGTGGCAGAACATGGATACATTGCACACATGCATGAGTGCA  50

seq1  AGTGTTCATGGAGGCCTGACACATATATCAAATACACAGGAGCTGGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCATGGAGGCCTGACACATATATCAAATACACAGGAGCTGGAGGA  100

seq1  CACACGGCTGTAAAGCTGTGAGCTACCAAGGTATAGTGGGCACAT-CGAT  149
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACACGGCTGTAAAGCTGTGAGCTACCAAGGTATAGTGGGCACATCCGAT  150

seq1  AATCCTAGCACTGAGGACATAGGAGGACTCTAGGGGCCAGCCAGCCTAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAGCACTGAGGACATAGGAGGACTCTAGGGGCCAGCCAGCCTAGC  200

seq1  TGAAATGGCATACTCCAAGTCCACTGAAGAGACCCTATCTCAAAATTTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGGCATACTCCAAGTCCACTGAAGAGACCCTATCTCAAAATTTAA  250

seq1  CGTGGAGAAGTGGTAAAGAAAGCTATCCTGAAGCCAACCTCTGGCCTCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAGAAGTGGTAAAGAAAGCTATCCTGAAGCCAACCTCTGGCCTCCA  300

seq1  CATGTGCTTTTGAGGGCAAGCACACCTAAACATACATGTGCCAAACACAC  349
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  CATGTGCTTTTGAGGGCAAGCACACCTAAACATACATGTGCCAA--ACAC  348

seq1  ACACACACACACACACACACATACACACACAGGAAAACAGAAGTAGTATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACATACACACACAGGAAAACAGAAGTAGTATC  398

seq1  TCTATACCATCAAACTTAACAGGAAAGCCATTTAAAGATCAAGATATGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACCATCAAACTTAACAGGAAAGCCATTTAAAGATCAAGATATGTC  448

seq1  TTAGCCCCTTGTGACCAGAGTTTTATCTTATCAGATTGTAGGTCCATCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCCTTGTGACCAGAGTTTTATCTTATCAGATTGTAGGTCCATCCA  498

seq1  AGATACCTCTAGAGGGGGCTGGAGAGATGGCTCAGTGGTAAAGAGCACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCTCTAGAGGGGGCTGGAGAGATGGCTCAGTGGTAAAGAGCACTG  548

seq1  GCTGCTCTTCCAGAGGGCCTGAATTC  575
      ||||||||||||||||||||||||||
seq2  GCTGCTCTTCCAGAGGGCCTGAATTC  574