BAC Information

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BAC

Clone NameB6Ng01-288L04
Chromosome4 (Build37)
Map Location 148,440,175 - 148,589,246
singlet/doubletdoublet
Overlap genePex14, LOC670864, Dffa, Cort, Apitd1, LOC666774, Pgd, Kif1b
Upstream geneLOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1
Downstream geneLOC100041794, Ube4b, Rbp7, LOC627985, Nmnat1, Lzic, Ctnnbip1, Clstn1, Pik3cd, D4Ertd429e, Slc25a33, Spsb1, H6pd, Gpr157, Slc2a5, LOC435818, Car6, LOC100041882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288L04.bB6Ng01-288L04.g
ACCGA086294GA086295
length1,1851,148
definitionB6Ng01-288L04.b B6Ng01-288L04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,440,175 - 148,441,356)(148,588,131 - 148,589,246)
sequence
gaattcactggaaataaagtgatttctaaatactacaaaggaagaagtct
cctataaatgagcctccgaagaggaagatgcaatcttcaaaactctatag
gaataacaataccataatcacttgataaacagaagttataagatcaattc
agtgagatgatttgccactgtttctagtgctcccttctgcacattaacaa
agtctataaccgacatttctagagcacaacaagtagaggagaggctgccg
tgccttgttttgaaggcactgagtggggacactcaggggaagcctaaggg
ggaaggtgaagccacagaagggcacgggccacctgcccgtccacaggggt
caggacagagctcttggctaactctaaacaaccctctcaagggtggtttg
cttctctgcgtgcactaacaccacctggctcatattctccctttagagga
cttaggctctgggccagggtggaaggggcgggcgcttctggaaagggtta
cctggtttattcgcttcccaaaagcccaatctgcgcagtaatcagcctca
gaccccgaagtctaaacaaggggcaagcccggtctttccctcggtgggcc
tccctccaacggaagctttggaattggagagacctctgaagcctgccagg
gttgcgagggaaacaggtaagccaccactcggcagtgtgttctcaccagg
gtttgacaggactcacggggacgttccaaacctcagagcactgctagaat
gggttatcgatggctagcagttggcagcaagaagagctgacagaaagact
acgctcccttaaaggcatctccattctcttatcttcaaagcaggtgtcgg
ctgctgcctgtaactgacagggcaggatgcggggtgctgatgggacggca
gataaaggcttttacctgaggggcagaggaaagggaaccagagcaacctg
gagactgactttcctttccttaggtgggatcccggggactccgggaggac
ctgcacagcacagctctagaagctggggccagagagcaacctgttcactt
gcccaacctgcactctggcagcaggagatgaaataacagcagctgctgcc
ccttagagcttacctgggagttagcagctgcacaggccaccagatggaaa
gatccgatgatctccctccaatcttcataaacctg
gaattcagaggtgaccttaaaaggcccagaagccagttgagtttggggag
gcagaaagccctccgcctcctcctcagatttgctgatgcttgtctctggg
ttctgtctacagggcatttgtgtacttgagcaacctgctgtatccggtgc
ccctgattcacagggtggccattgtcagtgagaagggggaagtccgggga
tttcttcgtgtggctgtgcaggccattgcaggtgagttagaaaaagatga
tcaaagccgggcatggtagtgcacgcctttaatcccagcactcgggaggc
agaggcaggtggatttctgagttccaggccagcctggtctacagagtgag
ttccaggacagccagggctacacagagaaaccctgtctcaaacaaaacaa
aacaaacaaaaaaaaaaagaaagaaaagaaaaagcaggctaagggttgga
gtgatgactcagcagttaagagtactggctgctcttacagaagactcagg
ttcaattcccagcatccacatggcagctcacaactgtgtaactccaattc
caggagatctgactccctcacacagacacatatgcaggcaaaacaccaat
gcacatttaaaaaaaaaaaaaacaaaagaaagaaaaagaaaaaaggcaag
ctagcttcttgatgcaggtgacacttcagtcgcatatgtaggtgggggta
tgcttgttcagcttgggggaggctgccattagcttcctttctgttagctt
tacccccctccccagcactcaagtgtcacttcagttgggggatattgctg
tatcggggaaaactgggtgggttaacataaattaactcttggattgactt
ggttagaagcgaacgaagcagttttagacaggcgttagcggaattgtgtt
tgttttgacgcccaagctgagcgccaggagtagacccctcccccccaacg
cgtacattccaattcgagtcctggctggctttctttctgtttaagcggga
tggaaagacgccctgaattatgggctctggaaatcccggcagtcagacca
gctaaaatatcttttgatatgaattacttgatcaggttagagttaattgg
gggaaagaaggaatgaacacttggaggaaactcaaaaaggcaagtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_148440175_148441356
seq2: B6Ng01-288L04.b_45_1229

seq1  GAATTCACTGGAAATAAAGTGATTTCTAAATACTACAAAGGAAGAAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGAAATAAAGTGATTTCTAAATACTACAAAGGAAGAAGTCT  50

seq1  CCTATAAATGAGCCTCCGAAGAGGAAGATGCAATCTTCAAAACTCTATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAATGAGCCTCCGAAGAGGAAGATGCAATCTTCAAAACTCTATAG  100

seq1  GAATAACAATACCATAATCACTTGATAAACAGAAGTTATAAGATCAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACAATACCATAATCACTTGATAAACAGAAGTTATAAGATCAATTC  150

seq1  AGTGAGATGATTTGCCACTGTTTCTAGTGCTCCCTTCTGCACATTAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGATGATTTGCCACTGTTTCTAGTGCTCCCTTCTGCACATTAACAA  200

seq1  AGTCTATAACCGACATTTCTAGAGCACAACAAGTAGAGGAGAGGCTGCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATAACCGACATTTCTAGAGCACAACAAGTAGAGGAGAGGCTGCCG  250

seq1  TGCCTTGTTTTGAAGGCACTGAGTGGGGACACTCAGGGGAAGCCTAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTTTTGAAGGCACTGAGTGGGGACACTCAGGGGAAGCCTAAGGG  300

seq1  GGAAGGTGAAGCCACAGAAGGGCACGGGCCACCTGCCCGTCCACAGGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGAAGCCACAGAAGGGCACGGGCCACCTGCCCGTCCACAGGGGT  350

seq1  CAGGACAGAGCTCTTGGCTAACTCTAAACAACCCTCTCAAGGGTGGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGAGCTCTTGGCTAACTCTAAACAACCCTCTCAAGGGTGGTTTG  400

seq1  CTTCTCTGCGTGCACTAACACCACCTGGCTCATATTCTCCCTTTAGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGCGTGCACTAACACCACCTGGCTCATATTCTCCCTTTAGAGGA  450

seq1  CTTAGGCTCTGGGCCAGGGTGGAAGGGGCGGGCGCTTCTGGAAAGGGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCTCTGGGCCAGGGTGGAAGGGGCGGGCGCTTCTGGAAAGGGTTA  500

seq1  CCTGGTTTATTCGCTTCCCAAAAGCCCAATCTGCGCAGTAATCAGCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTTATTCGCTTCCCAAAAGCCCAATCTGCGCAGTAATCAGCCTCA  550

seq1  GACCCCGAAGTCTAAACAAGGGGCAAGCCCGGTCTTTCCCTCGGTGGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCGAAGTCTAAACAAGGGGCAAGCCCGGTCTTTCCCTCGGTGGGCC  600

seq1  TCCCTCCAACGGAAGCTTTGGAATTGGAGAGACCTCTGAAGCCTGCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCAACGGAAGCTTTGGAATTGGAGAGACCTCTGAAGCCTGCCAGG  650

seq1  GTTGCGAGGGAAACAGGTAAGCCACCACTCGGCAGTGTGTTCTCACCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCGAGGGAAACAGGTAAGCCACCACTCGGCAGTGTGTTCTCACCAGG  700

seq1  GTTTGACAGGACTCACGGGGACGTTCCAAACCTCAGAGCACTGCTAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACAGGACTCACGGGGACGTTCCAAACCTCAGAGCACTGCTAGAAT  750

seq1  GGGTTATCGATGGCTAGCAGTTGGCAGCAAGAAGAGCTGACAGAAAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATCGATGGCTAGCAGTTGGCAGCAAGAAGAGCTGACAGAAAGACT  800

seq1  ACGCTCCCTTAAAGGCATCTCCATTCTCTTATCTTCAAAGCAGGTGTCGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCCCTTAAAGGCATCTCCATTCTCTTATCTTCAAAGCAGGTGTCGG  850

seq1  CTGCTGCCTGTAACTGACAGGGCAGGATGCGGGGTGCTGATGGGACGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCCTGTAACTGACAGGGCAGGATGCGGGGTGCTGATGGGACGGCA  900

seq1  GATAAAGGC-TTTACCTGAGGGGCAGAGGAAAGGGAACCAGAGCAACCTG  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGGCTTTTACCTGAGGGGCAGAGGAAAGGGAACCAGAGCAACCTG  950

seq1  GAGACTGACTTTCCTTTCCTTAGGT-GGATCCCGGGGACTCCCGGAGGAC  998
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  GAGACTGACTTTCCTTTCCTTAGGTGGGATCCCGGGGACTCCGGGAGGAC  1000

seq1  CTGCACAGCACAGCTCTAAGAGCTGGGGCCAGAGAAGCAAACTGTTCACT  1048
      ||||||||||||||||||  |||||||||||||| ||||| |||||||||
seq2  CTGCACAGCACAGCTCTAGAAGCTGGGGCCAGAG-AGCAACCTGTTCACT  1049

seq1  TGCCCAACCTGCACTCTGCCAGCAGGAGATGAAATAACAGGCAGCTGCTG  1098
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  TGCCCAACCTGCACTCTGGCAGCAGGAGATGAAATAACA-GCAGCTGCTG  1098

seq1  CCCCCTAGAAGCTACCTGAGAGGTAGCAGCCTGCACAGG-CACCAGATGA  1147
      |||| ||||   |||||| ||| |||||| ||||||||| ||||||||| 
seq2  CCCCTTAGAGCTTACCTGGGAGTTAGCAG-CTGCACAGGCCACCAGATGG  1147

seq1  AAAGATTCTATTATCTCCCTCC-ATC-TCAT-AACCTG  1182
      |||||| | || |||||||||| ||| |||| ||||||
seq2  AAAGATCCGATGATCTCCCTCCAATCTTCATAAACCTG  1185

seq1: chr4_148588131_148589246
seq2: B6Ng01-288L04.g_72_1219 (reverse)

seq1  TTTACTT-CCTTTT---GTTTCCTCAAGGTGTTCATTCCTTCTT--CCCC  44
      ||||||| ||||||   |||||||| | ||||||||||||||||  ||||
seq2  TTTACTTGCCTTTTTGAGTTTCCTCCAAGTGTTCATTCCTTCTTTCCCCC  50

seq1  AAATACTTCTTACCTGATTAAAGTATTCATTATCAAAAGATATTTTAGCT  94
      || ||  ||| ||||||| ||   ||||| ||||||||||||||||||||
seq2  AATTAACTCTAACCTGATCAAGTAATTCA-TATCAAAAGATATTTTAGCT  99

seq1  GTTCCCGACTGCCGG--ATTCCAGAG-CCATAATCAGGGGCTTCTT--CA  139
      | | | |||||||||   |||||||| |||||||   |||| ||||  ||
seq2  GGT-CTGACTGCCGGGATTTCCAGAGCCCATAATTCAGGGCGTCTTTCCA  148

seq1  T-CCGC-TAAACAGAAAGAAAGCCAGCAAGGACT-GAA-TGGAA-GTACG  184
      | |||| |||||||||||||||||||| |||||| ||| ||||| |||||
seq2  TCCCGCTTAAACAGAAAGAAAGCCAGCCAGGACTCGAATTGGAATGTACG  198

seq1  CGT--GGGGGGAGGGGCTTACT-CTGGCGCTCAGCTT-GGCGTCAAA--C  228
      |||  |||||||||||  |||| |||||||||||||| |||||||||   
seq2  CGTTGGGGGGGAGGGGTCTACTCCTGGCGCTCAGCTTGGGCGTCAAAACA  248

seq1  AACACAA-TCCGCT-ACGCCTGTCT-AAACTGC-TCG-TCGCTTCT-ACC  272
      ||||||| |||||| |||||||||| ||||||| ||| |||||||| |||
seq2  AACACAATTCCGCTAACGCCTGTCTAAAACTGCTTCGTTCGCTTCTAACC  298

seq1  AAGTCAATCCAAGAGTT-ATTTATGTT-ACCCA-CCAG-TTTCCCCGATA  318
      ||||||||||||||||| ||||||||| ||||| |||| |||||||||||
seq2  AAGTCAATCCAAGAGTTAATTTATGTTAACCCACCCAGTTTTCCCCGATA  348

seq1  CAGCAATATCCCCC-ACTGAAGTGACACTTGAGTGCTGGGGAGGGGGGTA  367
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGCAATATCCCCCAACTGAAGTGACACTTGAGTGCTGGGGAGGGGGGTA  398

seq1  AAGCTAACAGAAAGGAAGCTAATGGCAGCCT-CCCCAAGCTGAACAAGCA  416
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGCTAACAGAAAGGAAGCTAATGGCAGCCTCCCCCAAGCTGAACAAGCA  448

seq1  TACCCCCACCTACATATGCGACTGAAGTGTCACCTGCATCAAGAAGCTAG  466
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCACCTACATATGCGACTGAAGTGTCACCTGCATCAAGAAGCTAG  498

seq1  CTTGCCTTTTTTCTTTTTCTTTCTTTTGTTTTTTTTTTTTTTAAATGTGC  516
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTTTTTCTTTTTCTTTCTTTTGTTTTTTTTTTTTTTAAATGTGC  548

seq1  ATTGGTGTTTTGCCTGCATATGTGTCTGTGTGAGGGAGTCAGATCTCCTG  566
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGTTTTGCCTGCATATGTGTCTGTGTGAGGGAGTCAGATCTCCTG  598

seq1  GAATTGGAGTTACACAGTTGTGAGCTGCCATGTGGATGCTGGGAATTGAA  616
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGAGTTACACAGTTGTGAGCTGCCATGTGGATGCTGGGAATTGAA  648

seq1  CCTGAGTCTTCTGTAAGAGCAGCCAGTACTCTTAACTGCTGAGTCATCAC  666
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTCTTCTGTAAGAGCAGCCAGTACTCTTAACTGCTGAGTCATCAC  698

seq1  TCCAACCCTTAGCCTGCTTTTTCTTTTCTTTCTTTTTTTTTTTGTTTGTT  716
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCCTTAGCCTGCTTTTTCTTTTCTTTCTTTTTTTTTTTGTTTGTT  748

seq1  TTGTTTTGTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA  766
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAA  798

seq1  CTCACTCTGTAGACCAGGCTGGCCTGGAACTCAGAAATCCACCTGCCTCT  816
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCTGTAGACCAGGCTGGCCTGGAACTCAGAAATCCACCTGCCTCT  848

seq1  GCCTCCCGAGTGCTGGGATTAAAGGCGTGCACTACCATGCCCGGCTTTGA  866
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCGAGTGCTGGGATTAAAGGCGTGCACTACCATGCCCGGCTTTGA  898

seq1  TCATCTTTTTCTAACTCACCTGCAATGGCCTGCACAGCCACACGAAGAAA  916
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTTTCTAACTCACCTGCAATGGCCTGCACAGCCACACGAAGAAA  948

seq1  TCCCCGGACTTCCCCCTTCTCACTGACAATGGCCACCCTGTGAATCAGGG  966
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGGACTTCCCCCTTCTCACTGACAATGGCCACCCTGTGAATCAGGG  998

seq1  GCACCGGATACAGCAGGTTGCTCAAGTACACAAATGCCCTGTAGACAGAA  1016
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCGGATACAGCAGGTTGCTCAAGTACACAAATGCCCTGTAGACAGAA  1048

seq1  CCCAGAGACAAGCATCAGCAAATCTGAGGAGGAGGCGGAGGGCTTTCTGC  1066
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGACAAGCATCAGCAAATCTGAGGAGGAGGCGGAGGGCTTTCTGC  1098

seq1  CTCCCCAAACTCAACTGGCTTCTGGGCCTTTTAAGGTCACCTCTGAATTC  1116
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAAACTCAACTGGCTTCTGGGCCTTTTAAGGTCACCTCTGAATTC  1148