BAC Information

Click to search

BAC

Clone NameB6Ng01-288M23
Chromosome4 (Build37)
Map Location 81,881,604 - 82,037,152
singlet/doubletdoublet
Overlap geneNfib
Upstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164, EG545641
Downstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288M23.bB6Ng01-288M23.g
ACCGA086378GA086379
length1,1611,084
definitionB6Ng01-288M23.b B6Ng01-288M23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,035,986 - 82,037,152)(81,881,604 - 81,882,685)
sequence
gaattctatcacaaagcagcagtgctagcgtagtatagattgtcagctaa
attgtgcagtgatgggactcctaatagaaaatgtgatatggcgatgagat
agagagagacctggggagagaggggtttgaacttcaaatggaatgtccct
ttgggaagagacagggagggggtttcctggcagcggggaggtgagataga
gagacagaagcctaaagggagacctaaaaggggaagggagaaagacagat
tccccccatatccatgaggattttagaagtgggaaaacactctgtttatg
caagtatctttgcattgctttaacaaacatttaataagagggaaagaaaa
tattgtaaagtcatagttgtgtaccacctctgctaacaaaacagctgtcc
tctaaaactgaagagtgttttaactgtgctagagggcaaaagattcctgg
cccatgttatataatggagactgtgattatgtaaagccaatttactgtca
gccttcccgggagtcagtcttctggagtcaccacagacttaggggtgggg
caagatgaccaggggctttgttctcaggacagttctcttcttgtcctgga
aaacagccacaatatatatctcatatataagtgtttataatgagcgatat
tttaaagagaagagacccctatggtctcagatccctatgaaattccctgg
tattctatggctgacaatggacttttttttcccttcacctgcttaaagca
aagggctatgataaaggggcctttatcatgcaatgactaattttagttct
agctggaagctatctgtaagttaacaggttaaagtttgggtttcatttac
ttttctgatatcgctcaatataaagctatattgttgtagaatcatataat
tttagagccggaagagtgcccataatttactcgcttggtctgtctcctct
ttttgccaaaatgaccttaattgaagttgtccttctcaaatccactctct
acattcttgttttcattctttttcatttttaaaaaatagatggagttatt
tattggtattttattgcatatgagcattgcctgtatgcatgttttattgc
ctcatcctatctctctggacagaacttgggtgctcatccagcctggcctg
gacctgttctg
gaattcagtgtcctcttctctgtatagctggcatcttctccataaccaga
tttaaacattgcttccgtaagaactttttaatggcttcattgaaatagtc
aaaacttatgttctcattgtaattggactatctctctatcctgctttatt
tcacactcatattctcaaaatcaaactctaaccagagctcaaattttagt
aaaaaacaccgtgaaccaatccatactaaacatgtaatcgaatcaagcat
gataagtattctggagacaaagtaatgcaataaataaatctagaaaatat
ggagggtgcagtggttatgttgcaatttatatagcacgtccagggaaggc
cttactgagcaaagggaaacagtgctttggggaacatcaggtaaaagtta
tcccgcatgcaaactctgtgagcatttgagctggggagtggctcaatgtg
caaagcacataccccacaaacatgagaaccccattcagatttccagcacc
tagggaaaatcaggttttatttatgtatttaaagaattgttctcagcatc
tggataataggacttcaaggcaggcacagtgggaattgactaaaagtagt
gcagaccagtaggagacaggatggcacagaagatgggaagtgatgaagaa
gcagaatgcctgatgggtacatgctgaagacagggctgcctctgctaaag
tgacaacaataaggaaggaactgaactgagcaattgggagagtcgtggca
acaccagttagctcaaaatatcagacaagaaagaactacctgtggctaag
atagaagtactgttttgaaattcactttacaaatagccctttggcccttt
ataaactgggaacatatagcatgagcatgctgggaataaaatgcttttta
aattctgttcatgtaagactctgacgaggccttagctactgtgaacactt
tggagatcgatgcaaaagcaaaaagaatttattgttccagcatgctgggg
ccatctgcatccaaaagagaggtgacgacttctgagcagccattcagcca
gtttttattacagttttcaggttagaaatagagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_82035986_82037152
seq2: B6Ng01-288M23.b_50_1210 (reverse)

seq1  CAGAACAAGTTCAAGGCCAGCCTGGGATGAGCACCAAGGTCCTGT-CAGA  49
      |||||| || || ||||||| || ||||||||||| | || |||| ||||
seq2  CAGAAC-AGGTCCAGGCCAGGCT-GGATGAGCACCCAAGTTCTGTCCAGA  48

seq1  GAGAATGAGAAAGAGGCATACAAACATGCATACAGGCAAATGCTCATATG  99
      ||||   || | ||||||   |||||||||||||||| ||||||||||||
seq2  GAGA--TAGGATGAGGCAATAAAACATGCATACAGGC-AATGCTCATATG  95

seq1  C-ATAAAATA-CAATAAATAACT-CATCTATTTTTTAAAAAATTAAAAAG  146
      | |||||||| |||||||||||| |||||||||||| |||||| ||||||
seq2  CAATAAAATACCAATAAATAACTCCATCTATTTTTT-AAAAATGAAAAAG  144

seq1  AATGAAAAACAAGAATGTAGAGAGTGGATTTGAGAAGGACAACTTCAATT  196
      |||| ||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATG-AAAACAAGAATGTAGAGAGTGGATTTGAGAAGGACAACTTCAA-T  192

seq1  TAAGGTCATTTTGGCAAAAAGAGGAGACAGACCAAGCGAGGTAAATTATG  246
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAGGTCATTTTGGCAAAAAGAGGAGACAGACCAAGCGA-GTAAATTATG  241

seq1  GGCACTCTTCCGGCTCTAAAATTATATGATTCTACAACAATATAGCTTTT  296
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGCACTCTTCCGGCTCTAAAATTATATGATTCTACAACAATATAGC-TTT  290

seq1  ATATTGAGCGATATCAGAAAAGTAAATGAAACCCAAACTTTAACCTGTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAGCGATATCAGAAAAGTAAATGAAACCCAAACTTTAACCTGTTA  340

seq1  ACTTACAGATAGCTTCCAGCTAGAACTAAAATTAGTCATTGCATGATAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAGATAGCTTCCAGCTAGAACTAAAATTAGTCATTGCATGATAAA  390

seq1  GGCCCCTTTATCATAGCCCTTTGCTTTAAGCAGGTGAAGGGAAAAAAAAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTTTATCATAGCCCTTTGCTTTAAGCAGGTGAAGGGAAAAAAAAG  440

seq1  TCCATTGTCAGCCATAGAATACCAGGGAATTTCATAGGGATCTGAGACCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGTCAGCCATAGAATACCAGGGAATTTCATAGGGATCTGAGACCA  490

seq1  TAGGGGTCTCTTCTCTTTAAAATATCGCTCATTATAAACACTTATATATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGTCTCTTCTCTTTAAAATATCGCTCATTATAAACACTTATATATG  540

seq1  AGATATATATTGTGGCTGTTTTCCAGGACAAGAAGAGAACTGTCCTGAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATATTGTGGCTGTTTTCCAGGACAAGAAGAGAACTGTCCTGAGA  590

seq1  ACAAAGCCCCTGGTCATCTTGCCCCACCCCTAAGTCTGTGGTGACTCCAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGCCCCTGGTCATCTTGCCCCACCCCTAAGTCTGTGGTGACTCCAG  640

seq1  AAGACTGACTCCCGGGAAGGCTGACAGTAAATTGGCTTTACATAATCACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGACTCCCGGGAAGGCTGACAGTAAATTGGCTTTACATAATCACA  690

seq1  GTCTCCATTATATAACATGGGCCAGGAATCTTTTGCCCTCTAGCACAGTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATTATATAACATGGGCCAGGAATCTTTTGCCCTCTAGCACAGTT  740

seq1  AAAACACTCTTCAGTTTTAGAGGACAGCTGTTTTGTTAGCAGAGGTGGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTCTTCAGTTTTAGAGGACAGCTGTTTTGTTAGCAGAGGTGGTA  790

seq1  CACAACTATGACTTTACAATATTTTCTTTCCCTCTTATTAAATGTTTGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTATGACTTTACAATATTTTCTTTCCCTCTTATTAAATGTTTGTT  840

seq1  AAAGCAATGCAAAGATACTTGCATAAACAGAGTGTTTTCCCACTTCTAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATGCAAAGATACTTGCATAAACAGAGTGTTTTCCCACTTCTAAA  890

seq1  ATCCTCATGGATATGGGGGGAATCTGTCTTTCTCCCTTCCCCTTTTAGGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCATGGATATGGGGGGAATCTGTCTTTCTCCCTTCCCCTTTTAGGT  940

seq1  CTCCCTTTAGGCTTCTGTCTCTCTATCTCACCTCCCCGCTGCCAGGAAAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTTAGGCTTCTGTCTCTCTATCTCACCTCCCCGCTGCCAGGAAAC  990

seq1  CCCCTCCCTGTCTCTTCCCAAAGGGACATTCCATTTGAAGTTCAAACCCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCTGTCTCTTCCCAAAGGGACATTCCATTTGAAGTTCAAACCCC  1040

seq1  TCTCTCCCCAGGTCTCTCTCTATCTCATCGCCATATCACATTTTCTATTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCCAGGTCTCTCTCTATCTCATCGCCATATCACATTTTCTATTA  1090

seq1  GGAGTCCCATCACTGCACAATTTAGCTGACAATCTATACTACGCTAGCAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCCATCACTGCACAATTTAGCTGACAATCTATACTACGCTAGCAC  1140

seq1  TGCTGCTTTGTGATAGAATTC  1167
      |||||||||||||||||||||
seq2  TGCTGCTTTGTGATAGAATTC  1161

seq1: chr4_81881604_81882685
seq2: B6Ng01-288M23.g_69_1152

seq1  GAATTCAGTGTCCTCTTCTCTGTATAGCTGGCATCTTCTCCATAACCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTCCTCTTCTCTGTATAGCTGGCATCTTCTCCATAACCAGA  50

seq1  TTTAAACATTGCTTCCGTAAGAACTTTTTAATGGCTTCATTGAAATAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACATTGCTTCCGTAAGAACTTTTTAATGGCTTCATTGAAATAGTC  100

seq1  AAAACTTATGTTCTCATTGTAATTGGACTATCTCTCTATCCTGCTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTATGTTCTCATTGTAATTGGACTATCTCTCTATCCTGCTTTATT  150

seq1  TCACACTCATATTCTCAAAATCAAACTCTAACCAGAGCTCAAATTTTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTCATATTCTCAAAATCAAACTCTAACCAGAGCTCAAATTTTAGT  200

seq1  AAAAAACACCGTGAACCAATCCATACTAAACATGTAATCGAATCAAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACACCGTGAACCAATCCATACTAAACATGTAATCGAATCAAGCAT  250

seq1  GATAAGTATTCTGGAGACAAAGTAATGCAATAAATAAATCTAGAAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTATTCTGGAGACAAAGTAATGCAATAAATAAATCTAGAAAATAT  300

seq1  GGAGGGTGCAGTGGTTATGTTGCAATTTATATAGCACGTCCAGGGAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTGCAGTGGTTATGTTGCAATTTATATAGCACGTCCAGGGAAGGC  350

seq1  CTTACTGAGCAAAGGGAAACAGTGCTTTGGGGAACATCAGGTAAAAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGAGCAAAGGGAAACAGTGCTTTGGGGAACATCAGGTAAAAGTTA  400

seq1  TCCCGCATGCAAACTCTGTGAGCATTTGAGCTGGGGAGTGGCTCAATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCATGCAAACTCTGTGAGCATTTGAGCTGGGGAGTGGCTCAATGTG  450

seq1  CAAAGCACATACCCCACAAACATGAGAACCCCATTCAGATTTCCAGCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCACATACCCCACAAACATGAGAACCCCATTCAGATTTCCAGCACC  500

seq1  TAGGGAAAATCAGGTTTTATTTATGTATTTAAAGAATTGTTCTCAGCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAAATCAGGTTTTATTTATGTATTTAAAGAATTGTTCTCAGCATC  550

seq1  TGGATAATAGGACTTCAAGGCAGGCACAGTGGGAATTGACTAAAAGTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAATAGGACTTCAAGGCAGGCACAGTGGGAATTGACTAAAAGTAGT  600

seq1  GCAGACCAGTAGGAGACAGGATGGCACAGAAGATGGGAAGTGATGAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCAGTAGGAGACAGGATGGCACAGAAGATGGGAAGTGATGAAGAA  650

seq1  GCAGAATGCCTGATGGGTACATGCTGAAGACAGGGCTGCCTCTGCTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGCCTGATGGGTACATGCTGAAGACAGGGCTGCCTCTGCTAAAG  700

seq1  TGACAACAATAAGGAAGGAACTGAACTGAGCAATTGGGAGAGTCGTGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACAATAAGGAAGGAACTGAACTGAGCAATTGGGAGAGTCGTGGCA  750

seq1  ACACCAGTTAGCTCAAAATATCAGACAAGAAAGAACTACCTGTGGCTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGTTAGCTCAAAATATCAGACAAGAAAGAACTACCTGTGGCTAAG  800

seq1  ATAGAAGTACTGTTTTGAAATTCACTTTACAAATAGCCCTTTGGCCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTACTGTTTTGAAATTCACTTTACAAATAGCCCTTTGGCCCTTT  850

seq1  ATAAACTGGGAACATATAGCATGAGCATGCT-GGAATAAAATGCTTTTTA  899
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATAAACTGGGAACATATAGCATGAGCATGCTGGGAATAAAATGCTTTTTA  900

seq1  AATTCTGTTCATGTAAGACTCTGACGA-GCCTTAGCTACTGTGAACCACT  948
      ||||||||||||||||||||||||||| ||||||||||||||||||   |
seq2  AATTCTGTTCATGTAAGACTCTGACGAGGCCTTAGCTACTGTGAACACTT  950

seq1  TGGAGATCGATGCAAAAGCAAAAGGAATTTATTGTTCCAGCATGCTGGGG  998
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGAGATCGATGCAAAAGCAAAAAGAATTTATTGTTCCAGCATGCTGGGG  1000

seq1  CCATCCTGCATCCAAAGGAGAGGTGACGAC-TCTGAGCAGCCCATTCAGC  1047
      |||| ||||||||||| ||||||||||||| ||||||||| |||||||||
seq2  CCAT-CTGCATCCAAAAGAGAGGTGACGACTTCTGAGCAG-CCATTCAGC  1048

seq1  CAGTTTTTA-TACAGTTTTCAGGGGTAG-AATAGAGC  1082
      ||||||||| ||||||||||| || ||| ||||||||
seq2  CAGTTTTTATTACAGTTTTCA-GGTTAGAAATAGAGC  1084