BAC Information

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BAC

Clone NameB6Ng01-290E10
Chromosome4 (Build37)
Map Location 55,141,688 - 55,261,538
singlet/doubletdoublet
Overlap geneLOC670211
Upstream geneLOC666901, LOC100041303, LOC384018, EG666920, Zfp462
Downstream geneRad23b, LOC666953, LOC100041348, Klf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290E10.bB6Ng01-290E10.g
ACCGA087456GA087457
length1,080949
definitionB6Ng01-290E10.b B6Ng01-290E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,260,464 - 55,261,538)(55,141,688 - 55,142,508)
sequence
gaattcactaccattgagctttcaaattcctagagatccacttccatctc
cctttgtggcactgagacttaagatgcgcaaacccactgtgagcctttct
ttgctttgtctccttttccctcagcaggtggtaagcacttcattggcagt
gaataggctcttacacagcccacagcctggaagggggaaaggtgcttaaa
gtgtggtgaatgggggcagagacttggctcatcagcaggaggagctgcac
atgtgaagctctggactcaatccttagtgttgcaaaaataaatacagcct
gtgggggttggcaggattgctcactgtcattgtcaaggccaacttaaagg
aagatggtttgactgcaacttaggttggggttcagaaacgcataagaatc
ctgactcttgtgtccagtcagatcccaagtctgtaagagaaaacattttg
cagatgtacttaactaagttaaggtcaccttggattaggaaggtctctat
atgcactataatgatgacctcataaaaagaggagaagacccagagacatg
gatatatcataaacatacataatacatacaaacatacatacatacatacg
aaaaaccaaagcaataatagcaatggatactggaacatggccacaagaaa
ccaggcaataccaaacattcctgacatctgccaggagccaggagatgaat
caggaggggcggtggggggcaggacccatcacagaaccttcagaagggac
aacttggtttcagattccaagctttcaggactcttaaaaagcccattgct
ggtggtgtgtggcattttgggctctccgtgtaaagggagctctattggga
atctagtcccccttttcttcccctgcagctactgagcagagcctgtcagc
ccagggctggagtgctcccgggagtttgctgactggtcttcagtgtttgt
aaatggaatgggtaccaagagcttcagactccaacggattctgtgtttat
ctggctgattaccagagaaaaaattcccccccctcatgacccttaccaac
aagttagctgtaaaaaggaggaggttagct

gaattccaggttcccgctgtagaagcaggagcaatgggaagtcctgagat
ctgagagttattagcatgtgttcagcattgtcctggcaccttattacatt
gtcacacttaatcctaccaacgctgtgcagtatgtgtaacagccccatgt
tagaggagcccaaaggtgatgggtacggttatatatatataaccgtatat
atatatgagaagtgatgaccccataaagacaagaagcattctgctaccag
aagaagaacacagttcagtcgtttccattgtctggcatagatccatataa
tttttcttaagactcccactaaatatagcgaaaacatccaacactaagag
cacacttagatatattctagaggggagaacagatgaaatggatgaccttt
gttaaacattcaatacatgccagtcactataattgttctacttgaattga
cttatgcaatcctataagaatgtgatgaattaggagttgctatttattta
tttatttatttatttatttatttatttatttatttatttattgttttttt
tgagacagggtttctctgtgtagccctggctgtcttggaattcactctgt
agaccaggctggcctcgaactcagtctgcctgcctctgccgcccaagtgc
tggaattaaaggtgtgtgctatcactgcccagctttctttctttctttct
ttctttctttctttctttctttctttctttctttctttccttccttcctt
ctttctttctttctttctttctttctttctttctttctttctttctttct
ttctttcccttccttcttctttcttctttcttcttcttcttcttcttctt
cttcttcttcttcttcttcttccttccttcttggaggaattgctattttg
attcctattccatctccatgtttatgtgtaagaaactgaggcacagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_55260464_55261538
seq2: B6Ng01-290E10.b_47_1126 (reverse)

seq1  AGCTAACTTCTTCTTTTTTACAGCTAACTTTGTTGT-AGGGTCATGA--G  47
      ||||||| || || ||||||||||||||||  | || ||||||||||  |
seq2  AGCTAACCTCCTCCTTTTTACAGCTAACTTGTTGGTAAGGGTCATGAGGG  50

seq1  GGGGGATTTTTTTCTCTGGTAATCAGCCAGATAAACACAGAATCCGTTGG  97
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAATTTTTTCTCTGGTAATCAGCCAGATAAACACAGAATCCGTTGG  100

seq1  AGTCCTGAGCTCTTGGTA-CCATTCCATTTAACAAACACTGAAGACCAGT  146
      ||||   ||||||||||| ||||||||||| |||||||||||||||||||
seq2  AGTCTGAAGCTCTTGGTACCCATTCCATTT-ACAAACACTGAAGACCAGT  149

seq1  CAGCAAACTCCC-GGAGCACTCCAGCCCTGGGCTGACAGGCTCTGCTCAG  195
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACTCCCGGGAGCACTCCAGCCCTGGGCTGACAGGCTCTGCTCAG  199

seq1  TAGCTGCAGGGG-AGGAAAGGGGGACTAGATTCCCAATAGAGCTCCCTTT  244
      |||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  TAGCTGCAGGGGAAGAAAAGGGGGACTAGATTCCCAATAGAGCTCCCTTT  249

seq1  ACACGGAGAGCCCAAAATGCCACACACCACCAGCAATGGGCTTTTTAAGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGAGAGCCCAAAATGCCACACACCACCAGCAATGGGCTTTTTAAGA  299

seq1  GTCCTGAAAGCTTGGAATCTGAAACCAAGTTGTCCCTTCTGAAGGTTCTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAAAGCTTGGAATCTGAAACCAAGTTGTCCCTTCTGAAGGTTCTG  349

seq1  TGATGGGTCCTGCCCCCCACCGCCCCTCCTGATTCATCTCCTGGCTCCTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGTCCTGCCCCCCACCGCCCCTCCTGATTCATCTCCTGGCTCCTG  399

seq1  GCAGATGTCAGGAATGTTTGGTATTGCCTGGTTTCTTGTGGCCATGTTCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTCAGGAATGTTTGGTATTGCCTGGTTTCTTGTGGCCATGTTCC  449

seq1  AGTATCCATTGCTATTATTGCTTTGGTTTTTCGTATGTATGTATGTATGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCCATTGCTATTATTGCTTTGGTTTTTCGTATGTATGTATGTATGT  499

seq1  TTGTATGTATTATGTATGTTTATGATATATCCATGTCTCTGGGTCTTCTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGTATTATGTATGTTTATGATATATCCATGTCTCTGGGTCTTCTC  549

seq1  CTCTTTTTATGAGGTCATCATTATAGTGCATATAGAGACCTTCCTAATCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTATGAGGTCATCATTATAGTGCATATAGAGACCTTCCTAATCC  599

seq1  AAGGTGACCTTAACTTAGTTAAGTACATCTGCAAAATGTTTTCTCTTACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGACCTTAACTTAGTTAAGTACATCTGCAAAATGTTTTCTCTTACA  649

seq1  GACTTGGGATCTGACTGGACACAAGAGTCAGGATTCTTATGCGTTTCTGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGGATCTGACTGGACACAAGAGTCAGGATTCTTATGCGTTTCTGA  699

seq1  ACCCCAACCTAAGTTGCAGTCAAACCATCTTCCTTTAAGTTGGCCTTGAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAACCTAAGTTGCAGTCAAACCATCTTCCTTTAAGTTGGCCTTGAC  749

seq1  AATGACAGTGAGCAATCCTGCCAACCCCCACAGGCTGTATTTATTTTTGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAGTGAGCAATCCTGCCAACCCCCACAGGCTGTATTTATTTTTGC  799

seq1  AACACTAAGGATTGAGTCCAGAGCTTCACATGTGCAGCTCCTCCTGCTGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAAGGATTGAGTCCAGAGCTTCACATGTGCAGCTCCTCCTGCTGA  849

seq1  TGAGCCAAGTCTCTGCCCCCATTCACCACACTTTAAGCACCTTTCCCCCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCAAGTCTCTGCCCCCATTCACCACACTTTAAGCACCTTTCCCCCT  899

seq1  TCCAGGCTGTGGGCTGTGTAAGAGCCTATTCACTGCCAATGAAGTGCTTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCTGTGGGCTGTGTAAGAGCCTATTCACTGCCAATGAAGTGCTTA  949

seq1  CCACCTGCTGAGGGAAAAGGAGACAAAGCAAAGAAAGGCTCACAGTGGGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCTGAGGGAAAAGGAGACAAAGCAAAGAAAGGCTCACAGTGGGT  999

seq1  TTGCGCATCTTAAGTCTCAGTGCCACAAAGGGAGATGGAAGTGGATCTCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGCATCTTAAGTCTCAGTGCCACAAAGGGAGATGGAAGTGGATCTCT  1049

seq1  AGGAATTTGAAAGCTCAATGGTAGTGAATTC  1075
      |||||||||||||||||||||||||||||||
seq2  AGGAATTTGAAAGCTCAATGGTAGTGAATTC  1080


seq1: chr4_55141688_55142508
seq2: B6Ng01-290E10.g_65_946

seq1  GAATTCCAGGTTCCCGCTGTAGAAGCAGGAGCAATGGGAAGTCCTGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTCCCGCTGTAGAAGCAGGAGCAATGGGAAGTCCTGAGAT  50

seq1  CTGAGAGTTATTAGCATGTGTTCAGCATTGTCCTGGCACCTTATTACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGTTATTAGCATGTGTTCAGCATTGTCCTGGCACCTTATTACATT  100

seq1  GTCACACTTAATCCTACCAACGCTGTGCAGTATGTGTAACAGCCCCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACTTAATCCTACCAACGCTGTGCAGTATGTGTAACAGCCCCATGT  150

seq1  TAGAGGAGCCCAAAGGTGATGGGTACGGTTATATATATATAACCGTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGCCCAAAGGTGATGGGTACGGTTATATATATATAACCGTATAT  200

seq1  ATATATGAGAAGTGATGACCCCATAAAGACAAGAAGCATTCTGCTACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAGAAGTGATGACCCCATAAAGACAAGAAGCATTCTGCTACCAG  250

seq1  AAGAAGAACACAGTTCAGTCGTTTCCATTGTCTGGCATAGATCCATATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAACACAGTTCAGTCGTTTCCATTGTCTGGCATAGATCCATATAA  300

seq1  TTTTTCTTAAGACTCCCACTAAATATAGCGAAAACATCCAACACTAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTAAGACTCCCACTAAATATAGCGAAAACATCCAACACTAAGAG  350

seq1  CACACTTAGATATATTCTAGAGGGGAGAACAGATGAAATGGATGACCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTAGATATATTCTAGAGGGGAGAACAGATGAAATGGATGACCTTT  400

seq1  GTTAAACATTCAATACATGCCAGTCACTATAATTGTTCTACTTGAATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACATTCAATACATGCCAGTCACTATAATTGTTCTACTTGAATTGA  450

seq1  CTTATGCAATCCTATAAGAATGTGATGAATTAGGAGTTGCTATTTATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCAATCCTATAAGAATGTGATGAATTAGGAGTTGCTATTTATTTA  500

seq1  TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGTTTTTTT  550

seq1  TGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTGGAATTCACTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCTTGGAATTCACTCTGT  600

seq1  AGACCAGGCTGGCCTCGAACTCAGTCTGCCTGCCTCTGCCGCCCAAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTCGAACTCAGTCTGCCTGCCTCTGCCGCCCAAGTGC  650

seq1  TGGAATTAAAGGTGTGTGCTATCACTGCCCAGCTTTCTTTCTTTCTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTAAAGGTGTGTGCTATCACTGCCCAGCTTTCTTTCTTTCTTTCT  700

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCCTTCCTT  750

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  800

seq1  TTCTTTCTTTCCTTCCTTCTT-----------------------------  821
      |||||||   |||||||||||                             
seq2  TTCTTTC---CCTTCCTTCTTCTTTCTTCTTTCTTCTTCTTCTTCTTCTT  847

seq1  -----------------------------------  821
                                         
seq2  CTTCTTCTTCTTCTTCTTCTTCTTCCTTCCTTCTT  882


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