BAC Information

Click to search

BAC

Clone NameB6Ng01-290E22
Chromosome14 (Build37)4 (Build37)
Map Location 71,199,129 - 71,199,59151,990,532 - 51,991,543
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRhobtb2, LOC100043701, 1700081D17Rik, LOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2
Downstream geneGfra2, LOC100043132, LOC100043136
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290E22.bB6Ng01-290E22.g
ACCGA087480GA087481
length1,0001,007
definitionB6Ng01-290E22.b B6Ng01-290E22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,199,129 - 71,199,591)(51,990,532 - 51,991,543)
sequence
gaattctcttctcaaaagtctgaaatttaacatattactgttttggctgt
taaatttcttgacaatatattttgaactttgtgggttttttttttattac
gtattttcctcaattacatttataatgctatcccaaaagtcctccatacc
ctccccaccacttccctacccacccattcccatttttttggccctggcat
tcccctgtactggggcatataaagtttgcgtgtccaatgggcctctcttt
gcagtgatggccgactaggccatcttttgatacatatgcagctagagtca
agagctctggggtactggttagttcattttcaaacttttttttttaaact
tcttaggacaaatcacttctggcactttttaaattttttttattattagg
tattcatttcatttacattcccaatgctatcccaaaagtcccccacccac
tcccccaccccctcccacttcttggccctggcattcccctgtactggggc
atataaagtttgcacaaccaatggacctctcttcccattgatggccgatt
aggtcatcatctgatacatatgcagctagagacacgagctcctggcggta
ctggttagttcatattgttgttccacctatagggttgcagatccccccag
ctccttgggtactttctctagctcctccattgggggccctgtgatccatc
caatagctaactgtaagcatgcacttctgtgtttgcaaggccccagcata
gtctcacaagagacagctatatcagggtcctttcagcaaaatcttgctag
tgtgtgcaatggtgtcagcctttggaggctgattatggtatggattcccg
gaaatggcagtctccagaatggtccatcctttcgtctcagctccaaactt
ttgcctctgtaactccttccatgggtgttttcttcccaatttctaagaag
aggcaaagtatccaccactttgggttttgttcttctgagtttcatggtgt

gaattcactgccgggcagtggtggtgcatgcctttaatcccagcactaag
gaggcagaggcaagtggatttctgagttcttgtccagcctggtctacaaa
gtgagttccaggacagcaagagctttacagagaaaccctgtcttgaaaaa
ccaaaaacaccaaaaacaccaaaaaaaaaaaaaaaaaaaaattcatacag
tgagtttggtcccttcctcaatcctcccagattcacctcttaattttcct
ctcccctcctcctccttcttcctcttctctttcctttcccctctccctct
cctcctcctgctcccaatcgctcatcaggggtggggcctcatgagcgtct
cccatctccatgcttgcattttaactggcttgatattgtgcaggtgttta
gcagacagccacaactgctgtaagttccggagtgtcaaagttcacaatgt
tcagaaggttccatctctagtccttcccaacctctagctattacagtctt
tctgatcctattctgcaacaatccttgaaactggaaggagctatggtata
ggtgtcacaattatgggtaagcactctatagagacttattttgtgcttat
gaaaccagtagtgagcttccacattaaccatcattcacttcaattctctg
atgagttcccgagctgcactaatctctgggtaaagagatgggaattcaga
aagcaacttacaatgctctttttagcaaaagaaaattagaaggttcacct
tgagaaacctgtgaccttgacactcatgggttcttggctagagttaaagt
aacaagcatatgattctccctggattcattctcttttctttaagtatttt
ctacaagcctactttgttttctgttatcaaatgagaatcctgatgaattc
tctctgttctcttaaattgtctgatttccagtgttccatatgagactatg
aacagctggctaactattatttgatattatttattatattatttattatt
atttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_71199129_71199591
seq2: B6Ng01-290E22.b_421_889

seq1  -TTTTAATTTATTTTA--ATTAGGTATTTTCTTCATTTACATTTCCAATG  47
       ||| ||||| |||||  ||||||||||   |||||||||||| ||||||
seq2  TTTTAAATTTTTTTTATTATTAGGTATTCATTTCATTTACATTCCCAATG  50

seq1  CTATCCCAAAAGTCCCCCATACCCTCCCCCCCCCCCAACTCCCCTACCCA  97
      |||||||||||||||||||               || |||||    ||||
seq2  CTATCCCAAAAGTCCCCCA---------------CCCACTCC----CCCA  81

seq1  CCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATATAAA  147
      ||| ||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCCCCTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAA  131

seq1  GTTTGCAAGACCAATGGGCCTCTCTTTCCACTGATGGCCGACTAGGCCAT  197
      |||||||  |||||||| |||||||| ||| |||||||||| |||| |||
seq2  GTTTGCACAACCAATGGACCTCTCTTCCCATTGATGGCCGATTAGGTCAT  181

seq1  CTTCTGATACATATGCAGCTAGAGACACGAGCTCCGGGGGTTACTGGTTA  247
      | ||||||||||||||||||||||||||||||||| || | |||||||||
seq2  CATCTGATACATATGCAGCTAGAGACACGAGCTCCTGGCGGTACTGGTTA  231

seq1  GTTCATATTGTTGTTCCACCTATAGGGTTGCAGATCCTTTTAGCTCCTTG  297
      |||||||||||||||||||||||||||||||||||||    |||||||||
seq2  GTTCATATTGTTGTTCCACCTATAGGGTTGCAGATCCCCCCAGCTCCTTG  281

seq1  GGTACGTTCTCTAGCTTCTCCATTGGGGGCCCTGTG--------------  333
      ||||| |||||||||| |||||||||||||||||||              
seq2  GGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGC  331

seq1  --------AGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGCCTCAC  375
              ||||| ||||||||||||||| ||||||| |||||| |||||
seq2  TAACTGTAAGCATGCACTTCTGTGTTTGCAAGGCCCCAGCATAGTCTCAC  381

seq1  AAGAGACAGCTATATCAGGGTCATTTCAGCAAAATCTTGCTAGTGTGTGC  425
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTAGTGTGTGC  431

seq1  AATGGTGTCAGCATTTGGAGGCTGATAATGGGATGGAT  463
      |||||||||||| ||||||||||||| |||| ||||||
seq2  AATGGTGTCAGCCTTTGGAGGCTGATTATGGTATGGAT  469

seq1: chr4_51990532_51991543
seq2: B6Ng01-290E22.g_65_1071

seq1  GAATTCACTGCCGGGCAGTGGTGGTGCATGCCTTTAATCCCAGCACTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCCGGGCAGTGGTGGTGCATGCCTTTAATCCCAGCACTAAG  50

seq1  GAGGCAGAGGCAAGTGGATTTCTGAGTTCTTGTCCAGCCTGGTCTACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAAGTGGATTTCTGAGTTCTTGTCCAGCCTGGTCTACAAA  100

seq1  GTGAGTTCCAGGACAGCAAGAGCTTTACAGAGAAACCCTGTCTTGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCAGGACAGCAAGAGCTTTACAGAGAAACCCTGTCTTGAAAAA  150

seq1  CCAAAAACACCAAAAACACCAAAAAAAAAAAAAAAAAAAAATTCATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACACCAAAAACACCAAAAAAAAAAAAAAAAAAAAATTCATACAG  200

seq1  TGAGTTTGGTCCCTTCCTCAATCCTCCCAGATTCACCTCTTAATTTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGGTCCCTTCCTCAATCCTCCCAGATTCACCTCTTAATTTTCCT  250

seq1  CTCCCCTCCTCCTCCTTCTTCCTCTTCTCTTTCCTTTCCCCTCTCCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTCCTCCTCCTTCTTCCTCTTCTCTTTCCTTTCCCCTCTCCCTCT  300

seq1  CCTCCTCCTGCTCCCAATCGCTCATCAGGGGTGGGGCCTCATGAGCGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTGCTCCCAATCGCTCATCAGGGGTGGGGCCTCATGAGCGTCT  350

seq1  CCCATCTCCATGCTTGCATTTTAACTGGCTTGATATTGTGCAGGTGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTCCATGCTTGCATTTTAACTGGCTTGATATTGTGCAGGTGTTTA  400

seq1  GCAGACAGCCACAACTGCTGTAAGTTCCGGAGTGTCAAAGTTCACAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGCCACAACTGCTGTAAGTTCCGGAGTGTCAAAGTTCACAATGT  450

seq1  TCAGAAGGTTCCATCTCTAGTCCTTCCCAACCTCTAGCTATTACAGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGTTCCATCTCTAGTCCTTCCCAACCTCTAGCTATTACAGTCTT  500

seq1  TCTGATCCTATTCTGCAACAATCCTTGAAACTGGAAGGAGCTATGGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCCTATTCTGCAACAATCCTTGAAACTGGAAGGAGCTATGGTATA  550

seq1  GGTGTCACAATTATGGGTAAGCACTCTATAGAGACTTATTTTGTGCTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCACAATTATGGGTAAGCACTCTATAGAGACTTATTTTGTGCTTAT  600

seq1  GAAACCAGTAGTGAGCTTCCACATTAACCATCATTCACTTCAATTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGTAGTGAGCTTCCACATTAACCATCATTCACTTCAATTCTCTG  650

seq1  ATGAGTTCCCGAGCTGCACTAATCTCTGGGTAAAGAGATGGGAATTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCCCGAGCTGCACTAATCTCTGGGTAAAGAGATGGGAATTCAGA  700

seq1  AAGCAACTTACAATGCTCTTTTTAGCAAAAGAAAATTAGAAGGTTCACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTTACAATGCTCTTTTTAGCAAAAGAAAATTAGAAGGTTCACCT  750

seq1  TGAGAAACCTGTGACCTTGACACTCATGGGTTCTTGGCTAGAGTTAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACCTGTGACCTTGACACTCATGGGTTCTTGGCTAGAGTTAAAGT  800

seq1  AACAAGCATATGATTCTCCCTGGATTCATTCTCTTTTCTTTAAGTATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCATATGATTCTCCCTGGATTCATTCTCTTTTCTTTAAGTATTTT  850

seq1  CTACAAGCCTACTTTGTTTTCTGTTATCAAATGAGAATCCTGATGAATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGCCTACTTTGTTTTCTGTTATCAAATGAGAATCCTGATGAATTC  900

seq1  TCTCTTGTTTCTCTTAAATTGTCTGATTTCCAGTGTTTCCATATTGAGAA  950
      |||||   ||||||||||||||||||||||||||| ||||||| |||| |
seq2  TCTCT--GTTCTCTTAAATTGTCTGATTTCCAGTG-TTCCATA-TGAG-A  945

seq1  CTATGAAACAAGCTGGCTAAACTATTTATTTG--ATTATTTATTTATTTA  998
      |||||||   |||||||| ||||| |||||||  ||||||||||   |||
seq2  CTATGAA--CAGCTGGCT-AACTA-TTATTTGATATTATTTATTATATTA  991

seq1  TTTAT--TTATTTATT  1012
      |||||  |||||||||
seq2  TTTATTATTATTTATT  1007