BAC Information

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BAC

Clone NameB6Ng01-290H18
Chromosome4 (Build37)
Map Location 52,501,043 - 52,501,442
singlet/doubletsinglet
Overlap geneSmc2
Upstream geneLOC384015, LOC100041026, LOC100041038, LOC666724
Downstream geneLOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1, Olfr270, 1700054F22Rik, Nipsnap3a, Abca1, 4930522O17Rik, AI427809, LOC100041197, Slc44a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290H18.bB6Ng01-290H18.g
ACCGA087616GA087617
length1,181996
definitionB6Ng01-290H18.b B6Ng01-290H18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctatttagatctgtatctgcagaagttattttattagatagga
ttgctttaactatcttgatttttttgtttagccatatgaggttctttcat
gtaatgtgaagaattctattggaattttgatgggaattagattgaatctg
aagattgcttttggtaagatcgacattttcactatgttaatccatttgat
ccatgagtatgggagatcattccatcctttgatatcttcttcagtttctt
tcttaagaggcttaaattttgtttatataggtctttcatttgtttgacaa
aagtgacaaaaatatatttcatattatttatggctgttgtgaagtgccct
ttccctaatttctttctcagcctgattatcatttgtatataggaggccta
ctgatatttttagttaatttagtattcagctactttgctgaagatatctg
tcagatttaggagttctttagtagaatttttggggccacttatgtattct
atcaaatcatatgcaaacagtgatacttcaacttctttctttccaattgg
tatccccttgatcacctttagatgcttctccatatatgctgactgagagt
tttgctgatatagtagcctgaactggcatttatgttctcttagagtcttc
atgacctctaactaggatcatctggctttcatagtctctgctgagaagtc
tcctgtaattctgataggtctgcctttgttacttgtcccttttcccttgc
agtttttaatattctttctttattctgtgcatttaatgttttgattatta
tgtgacaagaggatattcttttctgttcccattatttggtgtgttctata
ggcttcttgttcctttatgaccatcactttctttttcttttattagatat
tttcttcatttacatttcaaatgctatccccaaagtccattatatcaccc
cctagaccatttttctgctacatatgcacctagagacaccagctctggga
gtactgggttagttcatattgttgttccacctatagggttgcagatcctt
agttcttgggtactttctctagctcttcattggggcctgtgttcattctg
gtcaatcaatagaatgacttgtgagcattcacgttctgtatttccaagtc
acttgcattagccctctctcaggaagagagt
gaattctgttttgttttcttttgttttgtttttttcgagacagggtttct
ctgtgtagccctcgctgtcctggaactcactctgtagaccaggctggcct
tgaactcagtaatctgcctgcctctgccacctgagtgctgggattaaagg
catgtgccaccactgcctggctaagaattctttgtttagctctgtacccc
attttaaatagtttttattggttctctggagtctaactttttgatttata
tatatatatatatataaatatatatttatatatatatataagtataattg
atattagccctctatcagatgtagagttggtaaagatcttttcccaatct
gttggttgccgttttatcctattaacattatcttttgccttatcgaagct
ttgcaattttatgaggtcccatttgtcaatacatgatcttaaagcatacg
ttattggtgttctgttcagcaaaatttcccctttgcccatgcactagagg
gcctttaccactttattttctattggtttaagtggatctggttttatgtc
taagttcttgatccactaggacttgaccattgtacaaggagataagaatg
gatcgatttgcgttcttctacatgctaactgccagttgaaccagcaccat
ttgttgaaaattatgtttttattttcactggatggttttaggtcccttct
caaatatcaagtgatcataggtgtgagggtacatttctgtgtcttcaatt
ctattccattgatctctctgcctgtcatggtaccaataccatgcagtttt
tatcattgctctgtagtacagcttgaggtcagggatggtgattctcccac
aactttttttttttttaaattggtgagagtagttttttgatatcctgggt
tttttgctattcccaaagaattggcaaattgttatttctaactcgatgaa
aaatttgagttggggagttttaatgggggattgtattgatctatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_52501043_52501442
seq2: B6Ng01-290H18.g_69_228

seq1  TTCTGTTTTGTTTTCTTTTGTTTTTGTATTTTATATATAGTTTCACTCAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATTTTTGTGCATATATTAAATTTCTGTGAGACATGCTAAATTTTTGTAGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  ACTACAGTTTTTATTTCAATATAGAAAAGTTGTTAAATAGTGACTTTTCA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TATATTCATAAGAAGGTGGGTTAACTAACATTAATAACTTAAGCCAAACA  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTTCTTTTGTTTGTTTGTTTGTTTGTTTGGTTTTGGTTTGGGTTTTTTTT  250
                                           ||  ||||| |||
seq2  -------------------------------------TTCTGTTTTGTTT  13

seq1  TTTTTTGGTTTTGGGTTTTTTTCAAGACAAGGTTTCTCTGTGTAGCCCTG  300
      | ||||| |||   ||||||||| ||||| ||||||||||||||||||| 
seq2  TCTTTTGTTTT---GTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTC  60

seq1  GCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  350
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  GCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGTAAT  110

seq1  CCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCGCCACCAC  400
      | ||||||||||||| ||  ||||||||||||||||||||| ||||||||
seq2  CTGCCTGCCTCTGCCACCTGAGTGCTGGGATTAAAGGCATGTGCCACCAC  160