BAC Information

Click to search

BAC

Clone NameB6Ng01-290I02
Chromosome4 (Build37)
Map Location 11,918,774 - 12,076,859
singlet/doubletdoublet
Overlap geneTmem67, C430048L16Rik, LOC230010, LOC623671, LOC100039958, Rbm12b
Upstream genePlekhf2, 2310030N02Rik, LOC546828, LOC666897, Trp53inp1, Ccne2, Ints8, Dpy19l4, Rbm35a, LOC634834, 1110037F02Rik, LOC100039847, E130016E03Rik, LOC100039862, Gem, Cdh17, Ppm2c
Downstream gene6720467C03Rik, LOC545592, OTTMUSG00000004461
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290I02.bB6Ng01-290I02.g
ACCGA087632GA087633
length1,1711,044
definitionB6Ng01-290I02.b B6Ng01-290I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,075,675 - 12,076,859)(11,918,774 - 11,919,805)
sequence
gaattcactttgtagaccaggctggcctcgaactcagaaatctgcctccc
tctgcctcccaagtgctgggattaaaggcgtagttaagtaccataccttt
tattctttaaatgcaactttaaaagcaaatagatactcctaaaaatattt
ttatcgtgatttaagaaagtgacacaacaataaatatttatagacagggt
ataatcagggatgtgctggtattgaaattggttccctaacatagtctgac
ttcaggcaccttgtttgactttctaaacttcatttctcatttataaaata
cagttataataaacattgagatcatacacataaagtgcttattggctaat
ataagtatccactgtcaactatttctattattgtggacaaggaaaatcta
attgagtacaaaaacatgagtatcaaaaaagccaaaattcattcagaaat
ctgtatttagtgagtctgagttaactactgaatacaatgaaccaccacta
agttcttcctagaaaaacccatattcttccctagcctgagagttctcgtt
accctaaacagattagtttactgtcttctgaacgttttgtgttagtcttt
gcaatctacttagggtaacacctagagcccagtgctaagataaaatggtg
ttgaagaaatcatagacctgtacatcattagtacagattagatgtcctgc
tcaggacatactataatatagctgctgagaggctcatactacccagagca
attcttctgtctttcctcttgttacacaaatacaagttagtaagtatttc
aagtgaaattttatttttataaaactttacaaagttgtgaatacaaattt
tgagattttcctgaggcatcacatgagaaaatttcatttcacagtaagtt
catttttggactagttaaagttcataggagacattggcacaatgtctcca
caaacactttttcaggcaagtagcaataaagtgccaacctgattaatcag
ttgtactcatggttttatgtgtcaccttgacacaagctggagtatcacag
agcttcagtggggaagtacctcatgagatccagctgtggggccatttctc
attatgatcgaggggacgccctggcatgtaccatcctagctggtagtctg
tgagttctctataagccaagc
gaattccagcactcagggcccgaattcctcttatttgctagatccctggg
gtccaaagctgaaactgtgaagccttctatctagtgatagaaataggtgc
catgaaaagattcattcctgccacaatggagaacactctttcatacagaa
tggagcataactggggctgtataactttggggatggacatgttgatgaag
tgacacttaagatggatttcaaatgcttgctagcacttatccagccagag
agagaatggggaagggcacagcagagaatggagatggttggtgcaagagg
tacaaatgtctgagggatggggtgtctttagcatggtgatagtggtaaag
aggggactaagaaaaagaagaaagtcaaaccagatgctgaatgcaaattt
caaaaggtctgtagttctaagatacggattgtggatcatggagaagcagg
gactagaagggtctcaagggagttcctggtctgcctagatacttgttgga
aaggcaacttagctagacaggaggcggcattagtttactccagtgcatga
gggttatcctgaagtacaaggagacagaatggtaatgtgttcatgtcttc
tgatgttggagactgctgttccagacccaggagactcagtggtgcagcca
aaggccagagtaccaagagaatggatagtataagctcagaactaagtcag
agtcaacaggcagaagagttgcacccaatttggagacaatcaagcaaaag
gaaagagttcttcttattcattccttttgttctattcaggtctccaacta
gctgatggagtagagtcatctgcactggggtggggggacagcttgcttca
cctctacggagtcacatgttaaccccactgggaaacatttcttgcagagt
tgttcaaattatctggacagctcactgggctgggcccagtcaattgacac
actaaattaactgtcacaggaccagtgagatagcctcagtggggtaagat
tgcttgcccatgcccagcaacctccatgggtgaccttgagtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_12075675_12076859
seq2: B6Ng01-290I02.b_45_1215 (reverse)

seq1  GCTT-GCTTAT--AGAACTCA-AGACTACCAGCCTAGAGATGGTACCATG  46
      |||| ||||||  |||||||| |||||||||| |||| ||||||| ||||
seq2  GCTTGGCTTATAGAGAACTCACAGACTACCAG-CTAG-GATGGTA-CATG  47

seq1  CACAAGGGGCCCTCCCCCCTCGATCACTAATTGAGAAAATGCCCCACAGC  96
      | || || |      ||||||||||| ||| |||||||  ||||||||||
seq2  C-CAGGGCG-----TCCCCTCGATCA-TAA-TGAGAAATGGCCCCACAGC  89

seq1  TGGATCTCATGGAGGTACTTCCCCAACTGAAGCTCTGTGATAACTCCAGC  146
      |||||||||| ||||||||||||| |||||||||||||||| ||||||||
seq2  TGGATCTCAT-GAGGTACTTCCCC-ACTGAAGCTCTGTGAT-ACTCCAGC  136

seq1  TTGTGTCAAGGTGACAACATAAAACCATTGAGTACAACTGATTAATCAGG  196
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TTGTGTCAAGGTGAC-ACATAAAACCA-TGAGTACAACTGATTAATCAGG  184

seq1  TTTGGCACTTTTATTGCTACTTGCCTGAAAAAGTGTTTGTGGAGACATTG  246
       ||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  -TTGGCAC-TTTATTGCTACTTGCCTGAAAAAGTGTTTGTGGAGACATTG  232

seq1  TGCCAATGTCTCCTATGAACTTTAACTAGTCCAAAAATGAACTTACTGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAATGTCTCCTATGAACTTTAACTAGTCCAAAAATGAACTTACTGTG  282

seq1  AAATGAAATTTTCTCATGTGATGCCTCAGGAAAATCTCAAAATTTGTATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATTTTCTCATGTGATGCCTCAGGAAAATCTCAAAATTTGTATT  332

seq1  CACAACTTTGTAAAGTTTTATAAAAATAAAATTTCACTTGAAATACTTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTTGTAAAGTTTTATAAAAATAAAATTTCACTTGAAATACTTAC  382

seq1  TAACTTGTATTTGTGTAACAAGAGGAAAGACAGAAGAATTGCTCTGGGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTATTTGTGTAACAAGAGGAAAGACAGAAGAATTGCTCTGGGTA  432

seq1  GTATGAGCCTCTCAGCAGCTATATTATAGTATGTCCTGAGCAGGACATCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGCCTCTCAGCAGCTATATTATAGTATGTCCTGAGCAGGACATCT  482

seq1  AATCTGTACTAATGATGTACAGGTCTATGATTTCTTCAACACCATTTTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGTACTAATGATGTACAGGTCTATGATTTCTTCAACACCATTTTAT  532

seq1  CTTAGCACTGGGCTCTAGGTGTTACCCTAAGTAGATTGCAAAGACTAACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCACTGGGCTCTAGGTGTTACCCTAAGTAGATTGCAAAGACTAACA  582

seq1  CAAAACGTTCAGAAGACAGTAAACTAATCTGTTTAGGGTAACGAGAACTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACGTTCAGAAGACAGTAAACTAATCTGTTTAGGGTAACGAGAACTC  632

seq1  TCAGGCTAGGGAAGAATATGGGTTTTTCTAGGAAGAACTTAGTGGTGGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTAGGGAAGAATATGGGTTTTTCTAGGAAGAACTTAGTGGTGGTT  682

seq1  CATTGTATTCAGTAGTTAACTCAGACTCACTAAATACAGATTTCTGAATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTATTCAGTAGTTAACTCAGACTCACTAAATACAGATTTCTGAATG  732

seq1  AATTTTGGCTTTTTTGATACTCATGTTTTTGTACTCAATTAGATTTTCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGGCTTTTTTGATACTCATGTTTTTGTACTCAATTAGATTTTCCT  782

seq1  TGTCCACAATAATAGAAATAGTTGACAGTGGATACTTATATTAGCCAATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACAATAATAGAAATAGTTGACAGTGGATACTTATATTAGCCAATA  832

seq1  AGCACTTTATGTGTATGATCTCAATGTTTATTATAACTGTATTTTATAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTATGTGTATGATCTCAATGTTTATTATAACTGTATTTTATAAA  882

seq1  TGAGAAATGAAGTTTAGAAAGTCAAACAAGGTGCCTGAAGTCAGACTATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATGAAGTTTAGAAAGTCAAACAAGGTGCCTGAAGTCAGACTATG  932

seq1  TTAGGGAACCAATTTCAATACCAGCACATCCCTGATTATACCCTGTCTAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAACCAATTTCAATACCAGCACATCCCTGATTATACCCTGTCTAT  982

seq1  AAATATTTATTGTTGTGTCACTTTCTTAAATCACGATAAAAATATTTTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTATTGTTGTGTCACTTTCTTAAATCACGATAAAAATATTTTTA  1032

seq1  GGAGTATCTATTTGCTTTTAAAGTTGCATTTAAAGAATAAAAGGTATGGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATCTATTTGCTTTTAAAGTTGCATTTAAAGAATAAAAGGTATGGT  1082

seq1  ACTTAACTACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGGAGGCAGAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACTACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGGAGGCAGAT  1132

seq1  TTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAATTC  1185
      |||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAATTC  1171

seq1: chr4_11918774_11919805
seq2: B6Ng01-290I02.g_64_1107

seq1  GAATTCCAGCACTCAGGGCCCGAATTCCTCTTATTTGCTAGATCCCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCACTCAGGGCCCGAATTCCTCTTATTTGCTAGATCCCTGGG  50

seq1  GTCCAAAGCTGAAACTGTGAAGCCTTCTATCTAGTGATAGAAATAGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAAGCTGAAACTGTGAAGCCTTCTATCTAGTGATAGAAATAGGTGC  100

seq1  CATGAAAAGATTCATTCCTGCCACAATGGAGAACACTCTTTCATACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAGATTCATTCCTGCCACAATGGAGAACACTCTTTCATACAGAA  150

seq1  TGGAGCATAACTGGGGCTGTATAACTTTGGGGATGGACATGTTGATGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCATAACTGGGGCTGTATAACTTTGGGGATGGACATGTTGATGAAG  200

seq1  TGACACTTAAGATGGATTTCAAATGCTTGCTAGCACTTATCCAGCCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTTAAGATGGATTTCAAATGCTTGCTAGCACTTATCCAGCCAGAG  250

seq1  AGAGAATGGGGAAGGGCACAGCAGAGAATGGAGATGGTTGGTGCAAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGGGGAAGGGCACAGCAGAGAATGGAGATGGTTGGTGCAAGAGG  300

seq1  TACAAATGTCTGAGGGATGGGGTGTCTTTAGCATGGTGATAGTGGTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGTCTGAGGGATGGGGTGTCTTTAGCATGGTGATAGTGGTAAAG  350

seq1  AGGGGACTAAGAAAAAGAAGAAAGTCAAACCAGATGCTGAATGCAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACTAAGAAAAAGAAGAAAGTCAAACCAGATGCTGAATGCAAATTT  400

seq1  CAAAAGGTCTGTAGTTCTAAGATACGGATTGTGGATCATGGAGAAGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGTCTGTAGTTCTAAGATACGGATTGTGGATCATGGAGAAGCAGG  450

seq1  GACTAGAAGGGTCTCAAGGGAGTTCCTGGTCTGCCTAGATACTTGTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAAGGGTCTCAAGGGAGTTCCTGGTCTGCCTAGATACTTGTTGGA  500

seq1  AAGGCAACTTAGCTAGACAGGAGGCGGCATTAGTTTACTCCAGTGCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAACTTAGCTAGACAGGAGGCGGCATTAGTTTACTCCAGTGCATGA  550

seq1  GGGTTATCCTGAAGTACAAGGAGACAGAATGGTAATGTGTTCATGTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTATCCTGAAGTACAAGGAGACAGAATGGTAATGTGTTCATGTCTTC  600

seq1  TGATGTTGGAGACTGCTGTTCCAGACCCAGGAGACTCAGTGGTGCAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGGAGACTGCTGTTCCAGACCCAGGAGACTCAGTGGTGCAGCCA  650

seq1  AAGGCCAGAGTACCAAGAGAATGGATAGTATAAGCTCAGAACTAAGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGAGTACCAAGAGAATGGATAGTATAAGCTCAGAACTAAGTCAG  700

seq1  AGTCAACAGGCAGAAGAGTTGCACCCAATTTGGAGACAATCAAGCAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACAGGCAGAAGAGTTGCACCCAATTTGGAGACAATCAAGCAAAAG  750

seq1  GAAAGAGTTCTTCTTATTCATTCCTTTTGTTCTATTCAGGTCTCCAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTTCTTCTTATTCATTCCTTTTGTTCTATTCAGGTCTCCAACTA  800

seq1  GCTGATGGAGTAGAGTCATCTGCACTGGGGT-GGGGGACAGCTTGCTTCA  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTGATGGAGTAGAGTCATCTGCACTGGGGTGGGGGGACAGCTTGCTTCA  850

seq1  CCTCTACGGAGTCACATGTTAACCCCACTTGGAAACA-TTCTTGCAGAGT  898
      ||||||||||||||||||||||||||||| ||||||| ||||||||||||
seq2  CCTCTACGGAGTCACATGTTAACCCCACTGGGAAACATTTCTTGCAGAGT  900

seq1  TG-TCCAATTATCTGGACAGCTCACT-GGCT-GGCCCAGTCAATTGACAC  945
      || || |||||||||||||||||||| |||| ||||||||||||||||||
seq2  TGTTCAAATTATCTGGACAGCTCACTGGGCTGGGCCCAGTCAATTGACAC  950

seq1  ACTAAATTAACTGTCACAGGACCAGTGAGATAG-CTCAGT-GGGTAAGAT  993
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  ACTAAATTAACTGTCACAGGACCAGTGAGATAGCCTCAGTGGGGTAAGAT  1000

seq1  TGCTTG-CCATG-CCAGCAACCT-CAT-GGTGACC-TGAGTTTG  1032
      |||||| ||||| |||||||||| ||| ||||||| ||||||||
seq2  TGCTTGCCCATGCCCAGCAACCTCCATGGGTGACCTTGAGTTTG  1044