BAC Information

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BAC

Clone NameB6Ng01-290I14
Chromosome4 (Build37)
Map Location 142,737,656 - 142,802,971
singlet/doubletdoublet
Overlap genePrdm2, LOC666018, EG626575
Upstream geneEG665983, LOC546484, 6330411D24Rik
Downstream geneLOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290I14.bB6Ng01-290I14.g
ACCGA087656GA087657
length1,1011,075
definitionB6Ng01-290I14.b B6Ng01-290I14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,737,656 - 142,738,755)(142,801,916 - 142,802,971)
sequence
gaattccagccaattttctgtatctgtagacttgtaggtcaccaaaagcc
actggaaggagactcaggaagctgagatgacaggattgatggggcccagt
gtctgagatgtggtgcccagagggctctgtaaaggtcaccaaacagcact
atgtccctggaacaaggtcagaagtagctcccagggaagaggccctgtca
gtctacccgcttagcttgacactgctaagaggctgggactcgcttttcat
gttataaaaatgaaagaaacatgctacacacgtctcagaatttttttttt
aacttaacttctaatttacctgagagtaaaaaactggtaagctccttcag
aacaattacacctctttttctacagctaaggtcactaagagctgcctgta
atcactgaggcaaattatcaaaataaaaccttcatgactttaactttgtt
ccacatattaaacagatctctccaacagcctccaactgcctaagctctgc
agctttgctgtgtaaatttctaatgtgcctgctccttccagggtgctgca
gagcctatgtgagacttcaggctcccccacttccacacaagcatacatag
atagatgcttcttcttcttctaccaatcaggataaaggagagtgctgacc
ctaagggtgggaggaagactaggatgaaggcttgccagaccaggtttaga
acacaaggggcctctgaggcccgtgctcatggttgagggaaaggggctct
gtcattctcaacccaggccctcattttacctgttcccagtagatgttcca
tgtacaaggccatacatctttctctttaagaactgagctaaatcaaaggg
gcacacttaatcaaaaggtcttcagaaaaaataacctgcaaacccgaatg
gacatactgcaccgcagctcttgggcatgatgagagaagtaagaactgac
cccattcattgcaagcaaacaggaactacctggtacaggttggtggtcca
gcaatctgaccctgacactgagaggcagtgagacccaagcataacaaagg
aagcctgttccacccttgtaaacagaatcacctgtaagagcagggcagtg
g
gaattcactatgtagctctggctgcttctgcctcgagtttggggattaaa
gtgtgcgccaccacgccagtcagtcgcggtcgtctgaagtagggtggctt
ctctgaccaactcttgagtttctcagccctaactctatagtggtcaggct
ggcccggccatggcgacgcgggcttcccttcgaggtaataacgctctggg
gcgagcggcgagtccgtgattgacagagagggcgacacagtccgccgggg
tcacgcctgaccgtcgtgttgagctcctcggggtcgcaggccacgagcta
cgcgcggggtcggggtcggggtcgggggttgtgggcgccgtgccgacgtc
acttccggccggagccaagatggcggcggcgcggccgcgggcgccagagc
gacggcggcggctgcggctctgggctcgctgaagcgttggcacgtcgcgc
tctggtgaggagcggcggagccggggagggcgggcgggcctcgggggaat
gtcccttggtgtcagtgaggagtgtggccaccgcggcgggggcgaccggg
ccgggcgctaaggggattgcggggcgggctgacgcgcccccttcgagctt
cctccgaacggccgggaaccggtggctggcgctggcgccgacgcgaggcg
gcgcgaaggctcccgctccgcggctcttaagtccccgcggccaagtttcg
ggtccgtttggtgacggcgcggcggactcgggggtgcgcggctgcggggt
cggcggggagcgcacgtgggccccgggcggtccccatccgcagggctgcg
ctgatctctgctcttttgtgtcccgggttgaatgtgcgagcgcatctgca
atcctcgagttgggttctgtgcctcgagccttttgtgttttcacccccgt
atagttccgtgtgctataaaccctgcccagtgggctcctcgagtgtcccc
ccatcgactccactgggtgcattacgttgcatgtgtcaacaggtgttgcg
gcttagccattacataggacctggttgcgttcgtcaaacgaatccaatcc
tactatgtctcccgaggggtgacga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_142737656_142738755
seq2: B6Ng01-290I14.b_44_1144

seq1  GAATTCCAGCCAATTTTCTGTATCTGTAGACTTGTAGGTCACCAAAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCAATTTTCTGTATCTGTAGACTTGTAGGTCACCAAAAGCC  50

seq1  ACTGGAAGGAGACTCAGGAAGCTGAGATGACAGGATTGATGGGGCCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAGGAGACTCAGGAAGCTGAGATGACAGGATTGATGGGGCCCAGT  100

seq1  GTCTGAGATGTGGTGCCCAGAGGGCTCTGTAAAGGTCACCAAACAGCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGATGTGGTGCCCAGAGGGCTCTGTAAAGGTCACCAAACAGCACT  150

seq1  ATGTCCCTGGAACAAGGTCAGAAGTAGCTCCCAGGGAAGAGGCCCTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTGGAACAAGGTCAGAAGTAGCTCCCAGGGAAGAGGCCCTGTCA  200

seq1  GTCTACCCGCTTAGCTTGACACTGCTAAGAGGCTGGGACTCGCTTTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACCCGCTTAGCTTGACACTGCTAAGAGGCTGGGACTCGCTTTTCAT  250

seq1  GTTATAAAAATGAAAGAAACATGCTACACACGTCTCAGAATTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAAAATGAAAGAAACATGCTACACACGTCTCAGAATTTTTTTTTT  300

seq1  AACTTAACTTCTAATTTACCTGAGAGTAAAAAACTGGTAAGCTCCTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAACTTCTAATTTACCTGAGAGTAAAAAACTGGTAAGCTCCTTCAG  350

seq1  AACAATTACACCTCTTTTTCTACAGCTAAGGTCACTAAGAGCTGCCTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTACACCTCTTTTTCTACAGCTAAGGTCACTAAGAGCTGCCTGTA  400

seq1  ATCACTGAGGCAAATTATCAAAATAAAACCTTCATGACTTTAACTTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGAGGCAAATTATCAAAATAAAACCTTCATGACTTTAACTTTGTT  450

seq1  CCACATATTAAACAGATCTCTCCAACAGCCTCCAACTGCCTAAGCTCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATATTAAACAGATCTCTCCAACAGCCTCCAACTGCCTAAGCTCTGC  500

seq1  AGCTTTGCTGTGTAAATTTCTAATGTGCCTGCTCCTTCCAGGGTGCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGCTGTGTAAATTTCTAATGTGCCTGCTCCTTCCAGGGTGCTGCA  550

seq1  GAGCCTATGTGAGACTTCAGGCTCCCCCACTTCCACACAAGCATACATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTATGTGAGACTTCAGGCTCCCCCACTTCCACACAAGCATACATAG  600

seq1  ATAGATGCTTCTTCTTCTTCTACCAATCAGGATAAAGGAGAGTGCTGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGCTTCTTCTTCTTCTACCAATCAGGATAAAGGAGAGTGCTGACC  650

seq1  CTAAGGGTGGGAGGAAGACTAGGATGAAGGCTTGCCAGACCAGGTTTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGTGGGAGGAAGACTAGGATGAAGGCTTGCCAGACCAGGTTTAGA  700

seq1  ACACAAGGGGCCTCTGAGGCCCGTGCTCATGGTTGAGGGAAAGGGGCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGGGCCTCTGAGGCCCGTGCTCATGGTTGAGGGAAAGGGGCTCT  750

seq1  GTCATTCTCAACCCAGGCCCTCATTTTACCTGTTCCCAGTAGATGTTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCTCAACCCAGGCCCTCATTTTACCTGTTCCCAGTAGATGTTCCA  800

seq1  TGTACAAGGCCATACATCTTTCTCTTTAAGAACTGAGCTAAATCAAGGGG  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGTACAAGGCCATACATCTTTCTCTTTAAGAACTGAGCTAAATCAAAGGG  850

seq1  GCACACTTAATCAAAAGGTCTTCAGAAAAAATAACCTGCAAACCCGAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTTAATCAAAAGGTCTTCAGAAAAAATAACCTGCAAACCCGAATG  900

seq1  GACATACTGCACCGCAGCTCTTGGGCATGATGAGAGAAGTAAGAACTGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACTGCACCGCAGCTCTTGGGCATGATGAGAGAAGTAAGAACTGAC  950

seq1  CCCATTCATTGCAAGCAAACAGGAACTACCTGGGTACAGGTTGGTGGTCC  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCCATTCATTGCAAGCAAACAGGAACTACCT-GGTACAGGTTGGTGGTCC  999

seq1  AGCAATCTGACCCTGACACTGAGAGGCAAGTGAGA-CCAAGCAT-ACAAA  1048
      ||||||||||||||||||||||||||| ||||||| |||||||| |||||
seq2  AGCAATCTGACCCTGACACTGAGAGGC-AGTGAGACCCAAGCATAACAAA  1048

seq1  GGAAGCCTGTTCCACCC-TGTAAACAGAATCACCTGTAAGAGCAGGGCAG  1097
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGAAGCCTGTTCCACCCTTGTAAACAGAATCACCTGTAAGAGCAGGGCAG  1098

seq1  TGG  1100
      |||
seq2  TGG  1101

seq1: chr4_142801916_142802971
seq2: B6Ng01-290I14.g_66_1140 (reverse)

seq1  TCGTCA-CCCTC-GGAGACATAGTAG--ATGGA-TCTTTTGACGAACGCA  45
      |||||| ||||| |||||||||||||   |||| || |||||||||||||
seq2  TCGTCACCCCTCGGGAGACATAGTAGGATTGGATTCGTTTGACGAACGCA  50

seq1  AACCAGTCCTATGTA--TGCTA--GCGC-ACACCTG-TGACACATGC-AC  88
      | |  ||||||||||   ||||   ||| ||||||| |||||||||| ||
seq2  ACCAGGTCCTATGTAATGGCTAAGCCGCAACACCTGTTGACACATGCAAC  100

seq1  GT-ATGCA-CCAGTGG-GTCGAT-GGGGGACACTCGAGGAGCCCACT-GG  133
      || ||||| ||||||| |||||| ||||||||||||||||||||||| ||
seq2  GTAATGCACCCAGTGGAGTCGATGGGGGGACACTCGAGGAGCCCACTGGG  150

seq1  CA-GGTTTATAGCACACGGAAACTATACGGGGGTGAAAAACAC-AAAGGC  181
      || |||||||||||||||| ||||||||||||||| ||||||| ||||||
seq2  CAGGGTTTATAGCACACGG-AACTATACGGGGGTG-AAAACACAAAAGGC  198

seq1  TCGAGGCACAGAA-CCAACTCGAGGATTGCAGATGCGCTCGCACATTCAA  230
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCACAGAACCCAACTCGAGGATTGCAGATGCGCTCGCACATTCAA  248

seq1  CCCGGGACACAAAAGAGCAGAGATCAGCGCAGCCCTGCGGATGGGGACCG  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGACACAAAAGAGCAGAGATCAGCGCAGCCCTGCGGATGGGGACCG  298

seq1  CCCGGGGCCCACGTGCGCTCCCCGCCGACCCCGCAGCCGCGCA-CCCCGA  329
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCGGGGCCCACGTGCGCTCCCCGCCGACCCCGCAGCCGCGCACCCCCGA  348

seq1  GTCCGCCGCGCCGTCACCAAACGGACCCGAAACTTGGCCGCGGGGACTTA  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCGCCGCGCCGTCACCAAACGGACCCGAAACTTGGCCGCGGGGACTTA  398

seq1  AGAGCCGCGGAGCGGGAGCCTTCGCGCCGCCTCGCGTCGGCGCCAGCGCC  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCGCGGAGCGGGAGCCTTCGCGCCGCCTCGCGTCGGCGCCAGCGCC  448

seq1  AGCCACCGGTTCCCGGCCGTTCGGAGGAAGCTCGAAGGGGGCGCGTCAGC  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCGGTTCCCGGCCGTTCGGAGGAAGCTCGAAGGGGGCGCGTCAGC  498

seq1  CCGCCCCGCAATCCCCTTAGCGCCCGGCCCGGTCGCCCCCGCCGCGGTGG  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCGCAATCCCCTTAGCGCCCGGCCCGGTCGCCCCCGCCGCGGTGG  548

seq1  CCACACTCCTCACTGACACCAAGGGACATTCCCCCGAGGCCCGCCCGCCC  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTCCTCACTGACACCAAGGGACATTCCCCCGAGGCCCGCCCGCCC  598

seq1  TCCCCGGCTCCGCCGCTCCTCACCAGAGCGCGACGTGCCAACGCTTCAGC  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGGCTCCGCCGCTCCTCACCAGAGCGCGACGTGCCAACGCTTCAGC  648

seq1  GAGCCCAGAGCCGCAGCCGCCGCCGTCGCTCTGGCGCCCGCGGCCGCGCC  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGAGCCGCAGCCGCCGCCGTCGCTCTGGCGCCCGCGGCCGCGCC  698

seq1  GCCGCCATCTTGGCTCCGGCCGGAAGTGACGTCGGCACGGCGCCCACAAC  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCATCTTGGCTCCGGCCGGAAGTGACGTCGGCACGGCGCCCACAAC  748

seq1  CCCCGACCCCGACCCCGACCCCGCGCGTAGCTCGTGGCCTGCGACCCCGA  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGACCCCGACCCCGACCCCGCGCGTAGCTCGTGGCCTGCGACCCCGA  798

seq1  GGAGCTCAACACGACGGTCAGGCGTGACCCCGGCGGACTGTGTCGCCCTC  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCAACACGACGGTCAGGCGTGACCCCGGCGGACTGTGTCGCCCTC  848

seq1  TCTGTCAATCACGGACTCGCCGCTCGCCCCAGAGCGTTATTACCTCGAAG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAATCACGGACTCGCCGCTCGCCCCAGAGCGTTATTACCTCGAAG  898

seq1  GGAAGCCCGCGTCGCCATGGCCGGGCCAGCCTGACCACTATAGAGTTAGG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCCGCGTCGCCATGGCCGGGCCAGCCTGACCACTATAGAGTTAGG  948

seq1  GCTGAGAAACTCAAGAGTTGGTCAGAGAAGCCACCCTACTTCAGACGACC  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGAAACTCAAGAGTTGGTCAGAGAAGCCACCCTACTTCAGACGACC  998

seq1  GCGACTGACTGGCGTGGTGGCGCACACTTTAATCCCCAAACTCGAGGCAG  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGACTGACTGGCGTGGTGGCGCACACTTTAATCCCCAAACTCGAGGCAG  1048

seq1  AAGCAGCCAGAGCTACATAGTGAATTC  1056
      |||||||||||||||||||||||||||
seq2  AAGCAGCCAGAGCTACATAGTGAATTC  1075