BAC Information

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BAC

Clone NameB6Ng01-291D11
Chromosome4 (Build37)
Map Location 96,790,016 - 96,791,158
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291D11.bB6Ng01-291D11.g
ACCGA088161GA088162
length1,1381,166
definitionB6Ng01-291D11.b B6Ng01-291D11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatggtgtaatgcattttatttataaaacttatacaacaaacctg
gggaaagttaggcatgtggtttcattgaccttactgtgataccttctggg
ctctaatcataagacttattcgcactgggtcataggtagggttggggaat
ttatgttcagaaggccatgaccatgccctgtgtttcaacattcaagaagg
acagtaagaaaaccagaagctgacataaagcattgcagaatctatggtaa
ggccagaagactgtaagaacaaattcctaaaaataaaacaaataccatac
acatggtccttgtcaaatgttctagcacaggttctggtgctaactgcttc
cttggtaatattacttactcatgtagcatatggctgttttgttaagcctc
atagacacatgtctgctgagataaattaatgttcccatctcaactgcacg
atttggcaggaataatatacttgccagccaatgtgtagactgacccacat
gaatccccactggagaatctaaaaggaaatgctgtacatgaagctgacaa
gcagttaaaggcaaaagatttagtagtaatatctgtgtgccttggcctag
cattctctgtagtacagttctgttattagagtttgaaaatacagggaagg
aacctgaaaatgtagataaattcagaaagtgaaagaatcactttttcaaa
ttatcaggtgtccaaaaaggctcctcattattaaccaaggaaggaaaagc
atttccaaaggtgatatgtatccatatgaacaaatgtgtacaagacagac
acatgtacattgccacatacctctttctgaaagtctagttttctctaagg
tatgaaaacctgtctatattatgggaaaaacacagcataacttatgttga
gaaatgtatactgtttgaccctcagctcttcctgctcctcttatggactc
tcgacacaccatacagatttaacattacacttcctcctttatcacagaga
cggtcacaaatttaattgaacttgtgttcagtatacattgccagactaca
cactaaccttattcaacatgtatttctttgtggattacatcaggtgtatt
tggcagaacagcgattatttcagcctcaacttgagcta
gaattctcctctgaggaaacagactgggaggaagaagcagctcattacca
gccagctaatcggtcaagaaaaaagccaaaagcggctggcgaaagccagc
atactgttcagcctccgggcagtcggcttcaaggtccgccctatgcggag
cccccgccctgcgtagtgcgtcagcaatgcgcagagagacaatgcgcaga
gaggcaatgcgcagagaggcaatgcgcagagagacaatgcgcagagaggc
aatgcgcagagaggcaatgcgcagagagacaatgtgcagagagacaatgc
gcagagaggcaatgcgcagagaggcaatgcgcagagagacaatgcgcaga
gaggcaatgtgcagactcattcattcccagagaggaacaaaggaaaatac
aacaggcatttccggtctttgaaggagccgagggtgggcgtgtccacgct
ccggtagaatacgtgcagattaaagaactcgccgagtcggtccgtaaata
cggaaccaatgctaattttaccttggtgcagttagacaggcttgccggca
tggcactaactcctgccgactggcaaacgattgtaaaagccgctctccct
agtatgggcaagtatatggaatggagagcgctttggcacgaagctgcaca
agcgcaggcccgagcaaacgcagctgctttgactccagagcagagagatt
ggacttttgacttgttaacgggtcagggaacttattctgctgatcagaca
aactaccattggggagcttatgcccaaatttcctccacggctattagggc
ctggaaggcgctctcccgagcaggtgaagccactgggcaattaacaaaga
tagtccagggacctcaggagtccttctcagattttgtggccagaatgaca
gaggcagcagagcgttatttttggagagtcagagcaagccgcgcctctga
tagaacagctcatctatgagcaagccacaagggagtgccgagcggccata
gccccaagaaaagaacaaaaggcttacaagaatctggctcaggtttgtcg
ggagctttgggggaacctcttcatgcaatgcagttagccggctgcattct
tcatccctaaccgctcaatgggccagaaatgattcgaggacattgttttt
aaacctgcgcggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_96790016_96791158
seq2: B6Ng01-291D11.b_47_1184 (reverse)

seq1  TAGCTCAAATTTGAGGCTGAAATATCTGCTTGTCTG-CAAATACAACTGG  49
      |||||| || ||||||||||||||   |||  |||| |||||||| || |
seq2  TAGCTC-AAGTTGAGGCTGAAATAATCGCTGTTCTGCCAAATACACCT-G  48

seq1  ATGTAATCCACAAAG-AATACATGGTGAATAAGGTTAGTTGTGTAGTTCT  98
      ||||||||||||||| |||||||| ||||||||||||| ||||||||   
seq2  ATGTAATCCACAAAGAAATACATGTTGAATAAGGTTAG-TGTGTAGT--C  95

seq1  TGGCAATGTATACTGAACAC-AGTTCATTTAAATTTTGTGACCGTTCTCT  147
      |||||||||||||||||||| |||||| ||||| |||||||||| |||||
seq2  TGGCAATGTATACTGAACACAAGTTCAATTAAA-TTTGTGACCG-TCTCT  143

seq1  GTGATAAAGGAGGAAGTGTAATGTTTAAATCTGTATGGTGTGTCGAGAGT  197
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGATAAAGGAGGAAGTGTAATG-TTAAATCTGTATGGTGTGTCGAGAGT  192

seq1  CCATAAGAGGAGCAGGAAGAGCTGAGGGTCAAACAGTATACATTTCTCAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGAGGAGCAGGAAGAGCTGAGGGTCAAACAGTATACATTTCTCAA  242

seq1  CATAAGTTATGCTGTGTTTTTCCCATAATATAGACAGGTTTTCATACCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTTATGCTGTGTTTTTCCCATAATATAGACAGGTTTTCATACCTT  292

seq1  AGAGAAAACTAGACTTTCAGAAAGAGGTATGTGGCAATGTACATGTGTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAACTAGACTTTCAGAAAGAGGTATGTGGCAATGTACATGTGTCT  342

seq1  GTCTTGTACACATTTGTTCATATGGATACATATCACCTTTGGAAATGCTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTACACATTTGTTCATATGGATACATATCACCTTTGGAAATGCTT  392

seq1  TTCCTTCCTTGGTTAATAATGAGGAGCCTTTTTGGACACCTGATAATTTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTGGTTAATAATGAGGAGCCTTTTTGGACACCTGATAATTTG  442

seq1  AAAAAGTGATTCTTTCACTTTCTGAATTTATCTACATTTTCAGGTTCCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGATTCTTTCACTTTCTGAATTTATCTACATTTTCAGGTTCCTT  492

seq1  CCCTGTATTTTCAAACTCTAATAACAGAACTGTACTACAGAGAATGCTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTATTTTCAAACTCTAATAACAGAACTGTACTACAGAGAATGCTAG  542

seq1  GCCAAGGCACACAGATATTACTACTAAATCTTTTGCCTTTAACTGCTTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGCACACAGATATTACTACTAAATCTTTTGCCTTTAACTGCTTGT  592

seq1  CAGCTTCATGTACAGCATTTCCTTTTAGATTCTCCAGTGGGGATTCATGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCATGTACAGCATTTCCTTTTAGATTCTCCAGTGGGGATTCATGT  642

seq1  GGGTCAGTCTACACATTGGCTGGCAAGTATATTATTCCTGCCAAATCGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGTCTACACATTGGCTGGCAAGTATATTATTCCTGCCAAATCGTG  692

seq1  CAGTTGAGATGGGAACATTAATTTATCTCAGCAGACATGTGTCTATGAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGAGATGGGAACATTAATTTATCTCAGCAGACATGTGTCTATGAGG  742

seq1  CTTAACAAAACAGCCATATGCTACATGAGTAAGTAATATTACCAAGGAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACAAAACAGCCATATGCTACATGAGTAAGTAATATTACCAAGGAAG  792

seq1  CAGTTAGCACCAGAACCTGTGCTAGAACATTTGACAAGGACCATGTGTAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGCACCAGAACCTGTGCTAGAACATTTGACAAGGACCATGTGTAT  842

seq1  GGTATTTGTTTTATTTTTAGGAATTTGTTCTTACAGTCTTCTGGCCTTAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTGTTTTATTTTTAGGAATTTGTTCTTACAGTCTTCTGGCCTTAC  892

seq1  CATAGATTCTGCAATGCTTTATGTCAGCTTCTGGTTTTCTTACTGTCCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATTCTGCAATGCTTTATGTCAGCTTCTGGTTTTCTTACTGTCCTT  942

seq1  CTTGAATGTTGAAACACAGGGCATGGTCATGGCCTTCTGAACATAAATTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATGTTGAAACACAGGGCATGGTCATGGCCTTCTGAACATAAATTC  992

seq1  CCCAACCCTACCTATGACCCAGTGCGAATAAGTCTTATGATTAGAGCCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCCTACCTATGACCCAGTGCGAATAAGTCTTATGATTAGAGCCCA  1042

seq1  GAAGGTATCACAGTAAGGTCAATGAAACCACATGCCTAACTTTCCCCAGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTATCACAGTAAGGTCAATGAAACCACATGCCTAACTTTCCCCAGG  1092

seq1  TTTGTTGTATAAGTTTTATAAATAAAATGCATTACACCATGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTATAAGTTTTATAAATAAAATGCATTACACCATGAATTC  1138