BAC Information

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BAC

Clone NameB6Ng01-292J24
Chromosome4 (Build37)
Map Location 34,544,032 - 34,697,013
singlet/doubletdoublet
Overlap geneOrc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136
Upstream geneRngtt, LOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik
Downstream gene1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292J24.bB6Ng01-292J24.g
ACCGA089216GA089217
length1,1091,110
definitionB6Ng01-292J24.b B6Ng01-292J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,695,908 - 34,697,013)(34,544,032 - 34,545,140)
sequence
gaattcaatatctctgtcacaaaacctgttcagaggaccagagtccagaa
ccgtcttcacatttgtacggaactgtctccaagggataggcaggaggact
agatacataggcagagcaggaaagtggcagagatcccaataacatgatgg
ataagaagcttaggaaacttcaggcctacaaacgaaacattcatgattcc
acaaggagcacctcgaatatactaagtgtgtgcagataaggttaaatgaa
ctgcctttgtcctaggaccaacaggaaaagggagctctgcccccacagtt
cctgtcacggagcaggataatccctgcttcgccttagcagcccactccag
ccgtgtttggcatggttactggtcagagttggctctgtgagcttactgcc
caacttcagtacaaacaggaaattataaatcaacatgcccatagagaaaa
caagccaagaactcgagagcatgatacaaatattagaacattttattgta
ctctttttttctgaaataggctaagcattaaagacatttataaatattag
ctttcaaaatgttttactattgaaaatgtgattcttaagtgacaaagcct
tctgcagtgaaaaccaaggtaaaatttctaaacaaccattttttttttct
ataactgttttcaaaatttgccactggaaaccattctgtaaagattctta
aagttggagtctagtgtttctttctcttttctgtttctgttgtttgtttc
tcttttgattttggggtgtgtgtgtgcgtgtgttgtgcattgtgtgtgtg
aagatagacgtgcacacatgtttagtatgtagacatagagactagaggac
aatttgctagagtcatttctttccctttctactatgtgggcccaggggtt
gaactcatcctgtcaagcttggtagcttactccttttgtcagctaagcta
tcatcttcctgaacctgggttgtcttctttattatcatatgcctttaaga
caaagtttctccctgaactggaaactagctgaatttgagcaagtgactgg
ctcagcgaacagtccaagggttgacctgtcttgtgtctcccaatactggg
gtacaagaa
gaattcagattttgaatttcattaagttggtcttaaaatgaacactattt
ttttctaagataaaagtaatgtcttaagaaaaaggaagccgggcagtggt
ggtgcacacctttaatcccagcactcgggaggcagaggcaggtggatttc
tgagtttgaggccagcctggtctacagagtgagttccaggacagccaggg
ctatgcagagagaccctgtctcgaaaaaccaaacaagaaaaaggaaattt
tgcctaaaagccaacagtcacgtgttaggaagcgtttaagcagggatgga
ggcagggagtgagagaaagggaaaggtcaggcaaaaccaaatgtatgaaa
tgccttatgggtatctgctcctaaatttgattggaggcctacaaagctga
cctctaacctccacacatataccatggcacaaacaccagcacatccacag
ccacttccatacacacaggaataaatgaaaatgaaaaagaagacgactgc
actataaatgggccggccgagctacctgctgatagttatgaagtcttgga
ggactttgctggtgaaactctccatgctctttaagataagcaccacagga
ggggaccgccaatggccagatgctgtcctctttttgattgtcactttgtg
gtctgctttcttttaaaccaatgtgaaacggagggattaaaagtaagcct
tcccagtcaaacatactacaatgccacttgttaacgtagttctttatatt
ttacagtaactgttatttttcccaaatgaaaatagtagttcattctaaca
gttactttagcaaaatctgtttctagacatggttaacactaagaaaaagg
ttcagaaagacctatacaacaaatatcaaagggattttctactgaaaaac
atagaaaaaagacacttttctatacaactaaattttttcagttgatacac
atttatgcactaacataagttgtatcgtcgatgtaaaacacactgaatgt
actattacatattacaaactttcatcttgaatggacctttaaatacttga
tcaaatcaactttaaagaataatgggacttaatggccaagacctttaatt
cctaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_34695908_34697013
seq2: B6Ng01-292J24.b_49_1157 (reverse)

seq1  TTCTTGTAACCCCAGTATTGGGAGACAC-AGACAGGTCAACCC-TGGACT  48
      ||||||| |||||||||||||||||||| |||||||||||||| ||||||
seq2  TTCTTGT-ACCCCAGTATTGGGAGACACAAGACAGGTCAACCCTTGGACT  49

seq1  G-TCGCTGAGCCAGTCAACCTGCTCAAA-TCAGCTAGTTTCCAGTTCAGG  96
      | |||||||||||||| || |||||||| |||||||||||||||||||||
seq2  GTTCGCTGAGCCAGTC-ACTTGCTCAAATTCAGCTAGTTTCCAGTTCAGG  98

seq1  GAGAAACCTTGTC-TAAAGGCAATATGATAATAAAGAAAGACAACCCAGG  145
      ||||||| ||||| ||||||| |||||||||||||| |||||||||||||
seq2  GAGAAACTTTGTCTTAAAGGC-ATATGATAATAAAG-AAGACAACCCAGG  146

seq1  TTCAGGAAGATGATAGCTTAGCTGAC-AAAGGAGTAAGCTACCAAGCTTG  194
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTCAGGAAGATGATAGCTTAGCTGACAAAAGGAGTAAGCTACCAAGCTTG  196

seq1  ACAGGATGAGTTCAACCCCTGGGCCCACATAGTAG-AAGGGAAAGAAATG  243
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACAGGATGAGTTCAACCCCTGGGCCCACATAGTAGAAAGGGAAAGAAATG  246

seq1  ACTCTAGCAAATTGTCCTCTAGTCTCTATGTCTACATACTAAACATGTGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGCAAATTGTCCTCTAGTCTCTATGTCTACATACTAAACATGTGT  296

seq1  GCACGTCTATCTTCACACACACAATGCACAACACACGCACACACACACCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTCTATCTTCACACACACAATGCACAACACACGCACACACACACCC  346

seq1  CAAAATCAAAAGAGAAACAAACAACAGAAACAGAAAAGAGAAAGAAACAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCAAAAGAGAAACAAACAACAGAAACAGAAAAGAGAAAGAAACAC  396

seq1  TAGACTCCAACTTTAAGAATCTTTACAGAATGGTTTCCAGTGGCAAATTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCCAACTTTAAGAATCTTTACAGAATGGTTTCCAGTGGCAAATTT  446

seq1  TGAAAACAGTTATAGAAAAAAAAAATGGTTGTTTAGAAATTTTACCTTGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAGTTATAGAAAAAAAAAATGGTTGTTTAGAAATTTTACCTTGG  496

seq1  TTTTCACTGCAGAAGGCTTTGTCACTTAAGAATCACATTTTCAATAGTAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTGCAGAAGGCTTTGTCACTTAAGAATCACATTTTCAATAGTAA  546

seq1  AACATTTTGAAAGCTAATATTTATAAATGTCTTTAATGCTTAGCCTATTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTGAAAGCTAATATTTATAAATGTCTTTAATGCTTAGCCTATTT  596

seq1  CAGAAAAAAAGAGTACAATAAAATGTTCTAATATTTGTATCATGCTCTCG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAAAGAGTACAATAAAATGTTCTAATATTTGTATCATGCTCTCG  646

seq1  AGTTCTTGGCTTGTTTTCTCTATGGGCATGTTGATTTATAATTTCCTGTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGGCTTGTTTTCTCTATGGGCATGTTGATTTATAATTTCCTGTT  696

seq1  TGTACTGAAGTTGGGCAGTAAGCTCACAGAGCCAACTCTGACCAGTAACC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGAAGTTGGGCAGTAAGCTCACAGAGCCAACTCTGACCAGTAACC  746

seq1  ATGCCAAACACGGCTGGAGTGGGCTGCTAAGGCGAAGCAGGGATTATCCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAACACGGCTGGAGTGGGCTGCTAAGGCGAAGCAGGGATTATCCT  796

seq1  GCTCCGTGACAGGAACTGTGGGGGCAGAGCTCCCTTTTCCTGTTGGTCCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCGTGACAGGAACTGTGGGGGCAGAGCTCCCTTTTCCTGTTGGTCCT  846

seq1  AGGACAAAGGCAGTTCATTTAACCTTATCTGCACACACTTAGTATATTCG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAAGGCAGTTCATTTAACCTTATCTGCACACACTTAGTATATTCG  896

seq1  AGGTGCTCCTTGTGGAATCATGAATGTTTCGTTTGTAGGCCTGAAGTTTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTCCTTGTGGAATCATGAATGTTTCGTTTGTAGGCCTGAAGTTTC  946

seq1  CTAAGCTTCTTATCCATCATGTTATTGGGATCTCTGCCACTTTCCTGCTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTTCTTATCCATCATGTTATTGGGATCTCTGCCACTTTCCTGCTC  996

seq1  TGCCTATGTATCTAGTCCTCCTGCCTATCCCTTGGAGACAGTTCCGTACA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATGTATCTAGTCCTCCTGCCTATCCCTTGGAGACAGTTCCGTACA  1046

seq1  AATGTGAAGACGGTTCTGGACTCTGGTCCTCTGAACAGGTTTTGTGACAG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAAGACGGTTCTGGACTCTGGTCCTCTGAACAGGTTTTGTGACAG  1096

seq1  AGATATTGAATTC  1106
      |||||||||||||
seq2  AGATATTGAATTC  1109

seq1: chr4_34544032_34545140
seq2: B6Ng01-292J24.g_62_1171

seq1  GAATTCAGATTTTGAATTTCATTAAGTTGGTCTTAAAATGAACACTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTTTGAATTTCATTAAGTTGGTCTTAAAATGAACACTATTT  50

seq1  TTTTCTAAGATAAAAGTAATGTCTTAAGAAAAAGGAAGCCGGGCAGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAAGATAAAAGTAATGTCTTAAGAAAAAGGAAGCCGGGCAGTGGT  100

seq1  GGTGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTC  150

seq1  TGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGG  200

seq1  CTATGCAGAGAGACCCTGTCTCGAAAAACCAAACAAGAAAAAGGAAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAGAGAGACCCTGTCTCGAAAAACCAAACAAGAAAAAGGAAATTT  250

seq1  TGCCTAAAAGCCAACAGTCACGTGTTAGGAAGCGTTTAAGCAGGGATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAAAAGCCAACAGTCACGTGTTAGGAAGCGTTTAAGCAGGGATGGA  300

seq1  GGCAGGGAGTGAGAGAAAGGGAAAGGTCAGGCAAAACCAAATGTATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGAGTGAGAGAAAGGGAAAGGTCAGGCAAAACCAAATGTATGAAA  350

seq1  TGCCTTATGGGTATCTGCTCCTAAATTTGATTGGAGGCCTACAAAGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTATGGGTATCTGCTCCTAAATTTGATTGGAGGCCTACAAAGCTGA  400

seq1  CCTCTAACCTCCACACATATACCATGGCACAAACACCAGCACATCCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAACCTCCACACATATACCATGGCACAAACACCAGCACATCCACAG  450

seq1  CCACTTCCATACACACAGGAATAAATGAAAATGAAAAAGAAGACGACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCATACACACAGGAATAAATGAAAATGAAAAAGAAGACGACTGC  500

seq1  ACTATAAATGGGCCGGCCGAGCTACCTGCTGATAGTTATGAAGTCTTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAATGGGCCGGCCGAGCTACCTGCTGATAGTTATGAAGTCTTGGA  550

seq1  GGACTTTGCTGGTGAAACTCTCCATGCTCTTTAAGATAAGCACCACAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGCTGGTGAAACTCTCCATGCTCTTTAAGATAAGCACCACAGGA  600

seq1  GGGGACCGCCAATGGCCAGATGCTGTCCTCTTTTTGATTGTCACTTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACCGCCAATGGCCAGATGCTGTCCTCTTTTTGATTGTCACTTTGTG  650

seq1  GTCTGCTTTCTTTTAAACCAATGTGAAACGGAGGGATTAAAAGTAAGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTTTCTTTTAAACCAATGTGAAACGGAGGGATTAAAAGTAAGCCT  700

seq1  TCCCAGTCAAACATACTACAATGCCACTTGTTAACGTAGTTCTTTATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTCAAACATACTACAATGCCACTTGTTAACGTAGTTCTTTATATT  750

seq1  TTACAGTAACTGTTATTTTTCCCAAATGAAAATAGTAGTTCATTCTAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTAACTGTTATTTTTCCCAAATGAAAATAGTAGTTCATTCTAACA  800

seq1  GTTACTTTAGCAAAATCTGTTTCTAGACATGGTTAACACTAAGAAAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTTAGCAAAATCTGTTTCTAGACATGGTTAACACTAAGAAAAAGG  850

seq1  TTCAGAAAGACCTATACAACAAATATCAAAGGGATTTTCTACTGAAAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAGACCTATACAACAAATATCAAAGGGATTTTCTACTGAAAAAC  900

seq1  ATAGAAAAAAGACACTTTTCTATACAACT-AATTTTTTCAGTTGATACAC  949
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATAGAAAAAAGACACTTTTCTATACAACTAAATTTTTTCAGTTGATACAC  950

seq1  ATTTATGCACTAACATAAGTTGTATCGTCGATGTAAAAACACACTGAATG  999
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTTATGCACTAACATAAGTTGTATCGTCGATGT-AAAACACACTGAATG  999

seq1  TACTATTACATATTACAAACTTTCAATCTTGAAATGGACC-TTAAATACT  1048
      |||||||||||||||||||||||| |||||| |||||||| |||||||||
seq2  TACTATTACATATTACAAACTTTC-ATCTTG-AATGGACCTTTAAATACT  1047

seq1  TGATCAAATCAAACTTAAAG-ATAAT-GGACTTAAATTGCAAAGA-CTTT  1095
      ||||||||||||  |||||| ||||| |||||| ||| || |||| ||||
seq2  TGATCAAATCAACTTTAAAGAATAATGGGACTT-AATGGCCAAGACCTTT  1096

seq1  AATTCCTAAAAAAA  1109
      ||||||||||||||
seq2  AATTCCTAAAAAAA  1110