BAC Information

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BAC

Clone NameB6Ng01-292K21
Chromosome4 (Build37)
Map Location 146,627,429 - 146,628,573
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546
Downstream geneLOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292K21.bB6Ng01-292K21.g
ACCGA089254GA089255
length1,2111,143
definitionB6Ng01-292K21.b B6Ng01-292K21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgatgaattatcagactgcatttttgaataaaacatttgtca
cattcactacatttgtaaggtttctctcctgtatgaaatctctgatgaat
cctcaaactggattttttagtaaagcatttgtcacattcactacatttgt
aaggtttctctcctgtatgaattctctgatgaattctcagacagccattt
tcagtaaaggatttgtcacattcattacatttgtaaggtttctctcctgt
atgaattatctgatgccttctcagactgtgtttgtcagtaaagcatttgt
cacattcattgcatttgtaaggttctctcctgaatgaattttctgatgaa
tactaagatggcattgttgggtaaagcatttgtcacattcactgcatttg
tacagtttctctcctgtatgaattctctgatgaatactaagatgtgattt
tcgggtaaagcatttgtcacattcactgcatttataaggtttctctcctg
catgaattctatgatgaactctcagagagcctttgtgagtaaagcatttg
tcacattcactacatttgtaagatttctctcctgcatgaattctatgatg
aactctcagatagcctttgtcagtaaagcatttgtcgcattcactacatt
tgtaaggtttctctcctgcatgaattctatgatgaactctaagactgctt
ttgtcagtaaagcatttgtcacactcactgcattggtacggtttctctcc
tgtatgaattctctgatgaactctcagactgcctttgtcagtaaagcatt
tgtcgcattcactacatttgtaaggtttctctcctgaatgaattctacga
tgaatactaagatgggatgtttgggtaaagcatttgtcacactcactgca
tttgtaaggtttctctcctgtatgaattctctgatgactctcagactgcc
ttgtcagtaaagcatttgtcacattcatacatttgtagtttctctcctgt
atgaattctctgatgctttctcagagtgcatttgtcagtaaagcatttgt
cgcattcactacatttgtaagtttctctctgatgaatgttgatggatact
aagaatggaaagtttggatagcaatggtcactcacatatattggagatct
tcctggataattctctggcgtgaccttgcagactgtcacctctggagatt
aaaaggcacag
gaattcaaactttgctcttcacagagaccctgggagaaggaaaacaacaa
gaatgagtgtgtctctggtaaatacaccacaggtcagtgtcctttccaca
tttctttttaaaaaaatctctttttattcaagtcatccaaaactttttat
ctctatatgtttaatggtatctaaagggcttattttctatgatctatatc
ttttgtaataatgagaatttaatgtttttccctttcatgcatataatggc
tttatagtttaacttgatttttatattgtgaggatatataattcccttgg
aatagagacctgcatgtctcaaataggatctattagaatgatgctcaaag
aatagattgatggacattttctatgttgaataagttctgtccttttgtat
tagtgtaaagtaaggtctcttgtgccacataaattgcatttcagggatgg
tcatgtttctaaacacaagcttgtgaatgagggtatagaaataagtataa
attcatatcactaaagaacatatataaaagagtataatttgtagaaggta
aaagtataagagatccactgtcttgaatcctgatagtaactatattatta
gctcctagggtcacagataatggaaggaaaatgtctttcttttaccatta
gtgtaattgtgagctgatacagatttcagtattctgacaacatttttttc
acacctcataacacacagtaatcactgttgacacctgaaatctatttatc
tcaagagagacactgtccctgtggaaaattcacaatatatagatattttt
ccctccttttggtttcagaaataattttaagtcctgttttcttcaccttt
gtatttcatcacatgaactatattagtaaaatttttctagagaggatagc
tatggtgttgtgcatataccatcaattttcgaaataaatgaatgtccttt
cttatttttttgtctcttttccttagagggaaaggcttgaatcagtctat
gctaatcctctcagtcaagctgtgcatacatagggaaaactgaaaggtgg
tggcaatgtttctatttttcattacgaatactatttccttaacgttacat
aagtgttatatctgacgtttacgttcacctgaatggatacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146627429_146628573
seq2: B6Ng01-292K21.g_61_1203

seq1  GAATTCAAACTTTGCTCTTCACAGAGACCCTGGGAGAAGGAAAACAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTTTGCTCTTCACAGAGACCCTGGGAGAAGGAAAACAACAA  50

seq1  GAATGAGTGTGTCTCTGGTAAATACACCACAGGTCAGTGTCCTTTCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGTGTGTCTCTGGTAAATACACCACAGGTCAGTGTCCTTTCCACA  100

seq1  TTTCTTTTTAAAAAAATCTCTTTTTATTCAAGTCATCCAAAACTTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTAAAAAAATCTCTTTTTATTCAAGTCATCCAAAACTTTTTAT  150

seq1  CTCTATATGTTTAATGGTATCTAAAGGGCTTATTTTCTATGATCTATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATATGTTTAATGGTATCTAAAGGGCTTATTTTCTATGATCTATATC  200

seq1  TTTTGTAATAATGAGAATTTAATGTTTTTCCCTTTCATGCATATAATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAATAATGAGAATTTAATGTTTTTCCCTTTCATGCATATAATGGC  250

seq1  TTTATAGTTTAACTTGATTTTTATATTGTGAGGATATATAATTCCCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTTTAACTTGATTTTTATATTGTGAGGATATATAATTCCCTTGG  300

seq1  AATAGAGACCTGCATGTCTCAAATAGGATCTATTAGAATGATGCTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGACCTGCATGTCTCAAATAGGATCTATTAGAATGATGCTCAAAG  350

seq1  AATAGATTGATGGACATTTTCTATGTTGAATAAGTTCTGTCCTTTTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATTGATGGACATTTTCTATGTTGAATAAGTTCTGTCCTTTTGTAT  400

seq1  TAGTGTAAAGTAAGGTCTCTTGTGCCACATAAATTGCATTTCAGGGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTAAAGTAAGGTCTCTTGTGCCACATAAATTGCATTTCAGGGATGG  450

seq1  TCATGTTTCTAAACACAAGCTTGTGAATGAGGGTATAGAAATAAGTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTCTAAACACAAGCTTGTGAATGAGGGTATAGAAATAAGTATAA  500

seq1  ATTCATATCACTAAAGAACATATATAAAAGAGTATAATTTGTAGAAGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATATCACTAAAGAACATATATAAAAGAGTATAATTTGTAGAAGGTA  550

seq1  AAAGTATAAGAGATCCACTGTCTTGAATCCTGATAGTAACTATATTATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATAAGAGATCCACTGTCTTGAATCCTGATAGTAACTATATTATTA  600

seq1  GCTCCTAGGGTCACAGATAATGGAAGGAAAATGTCTTTCTTTTACCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAGGGTCACAGATAATGGAAGGAAAATGTCTTTCTTTTACCATTA  650

seq1  GTGTAATTGTGAGCTGATACAGATTTCAGTATTCTGACAACATTTTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTGTGAGCTGATACAGATTTCAGTATTCTGACAACATTTTTTTC  700

seq1  ACACCTCATAACACACAGTAATCACTGTTGACACCTGAAATCTATTTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCATAACACACAGTAATCACTGTTGACACCTGAAATCTATTTATC  750

seq1  TCAAGAGAGACACTGTCCCTGTGGAAAATTCACAATATATAGATATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGAGACACTGTCCCTGTGGAAAATTCACAATATATAGATATTTTT  800

seq1  CCCTCCTTTTGGTTTCAGAAATAATTTTAAGTCCTGTTTTCTTCACCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTTTGGTTTCAGAAATAATTTTAAGTCCTGTTTTCTTCACCTTT  850

seq1  GTATTTCATCACATGAACTATATTAGTAAAATTTTTCTAGAGAGGATAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTCATCACATGAACTATATTAGTAAAATTTTTCTAGAGAGGATAGC  900

seq1  TATGGTGTTGTGCATATACCATCAATTTTCGAAAATAAATGAATGTCCTT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATGGTGTTGTGCATATACCATCAATTTTCG-AAATAAATGAATGTCCTT  949

seq1  TCTTATTTTTTTGTCTCTTTTCCTTAGAAGGGAAAGGCTTGAATCAGTCT  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTTATTTTTTTGTCTCTTTTCCTTAG-AGGGAAAGGCTTGAATCAGTCT  998

seq1  ATGCTAATCCTCTTCAGTCAAGCTGTGCATTACATAGGGAAAACTGAAGG  1050
      |||||||||||| |||||||||||||||| |||||||||||||||||| |
seq2  ATGCTAATCCTC-TCAGTCAAGCTGTGCA-TACATAGGGAAAACTGAAAG  1046

seq1  GTTGTGGCAATGTTTCTATTTTTCATTACG-ATACTATTTTCTTTACG-T  1098
      || ||||||||||||||||||||||||||| ||||||||| ||| ||| |
seq2  GTGGTGGCAATGTTTCTATTTTTCATTACGAATACTATTTCCTTAACGTT  1096

seq1  ACATAAGTG-TATATCTGAAGGTTTTTACGTACA-CTGAAT-GATACATT  1145
      ||||||||| ||||||||| |   ||||||| || |||||| ||||||||
seq2  ACATAAGTGTTATATCTGACG---TTTACGTTCACCTGAATGGATACATT  1143