BAC Information

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BAC

Clone NameB6Ng01-292M01
Chromosome4 (Build37)
Map Location 145,916,371 - 145,917,550
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012
Downstream geneLOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292M01.bB6Ng01-292M01.g
ACCGA089310GA089311
length1,1671,099
definitionB6Ng01-292M01.b B6Ng01-292M01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtttagatctgttcctcattttttaattggtttatttgtattt
taaaaagtatatggttccttgagttctttatatattttagatactagccc
tctattggatgtggaattggtttaaaaaaatcttttcccattacataggc
tgttacatggtctgattgatggtgccctttgtcttacagaaagttttcaa
atttttgcggtcctgtttattaattcttgatcttagagcctaaactaatg
gtgttctggtcacatagtcttctactgtgccattgactttaagggtagtc
cccattttctattttattatattcagtgtaactagttttatgttgaagtc
tttgaatcatttagagttgaggtttgtgaaaagtactacgtatggatcta
ttttcattcttctacattgagctttctaaatcttctgaatccccacctga
tctttggccatgcagctgcttgctgacatccttgcttaatttgaaaggta
tgactttctctcaatctccctctccctggcaactgctaagatttgcaact
tgcttgactgttattttcctctcaagatctaataaagggccctttctttt
cctaataagtccacttttaattcattttattaataagactaagaactttg
aaaagaaactcagtttctccagtaacatgaacaaccataaagggacatta
aaacgtttctcaggggatacagcaggtgatcttgttccaggactttaggt
gggtaagcacttgctggtgggtcaaacctacagtgaatactctctgaata
agctttctctaggagggattcaatctccaggctttatcactctgtcttgt
ctcagcatataagccttttgaactgactctgtctcctgtgaaggagggaa
aaggttcctattttcgcccatccctgcctccctttagtagcgataagagc
aaactatggagtatatatgcaatgcctccctccaccctaccctctctgct
ctgtcacattccccatgctgcccagtagagcagcacaaagtactgggtaa
tatttcctatctctcatttctcagtgtttccattgcctgatatctcatgt
tcttaaatggtatggaactcattcctcgcgatgatcatgtttctcggatt
cactgcttagcctattt
gaattcacaatgaagcaactgtggaaggttgagaaacttcaaaagaaatg
ttcaaagactttagtaatcagaaacatatacatcaaagcaactctgagat
tccaccttccaccaatcagaatggctaagatcaaaaactcaggtgacagc
acatgctggccaggatgtggagaaagaggagcactcctccattgcttgtg
gaattgaaaactggtcaactattctggaaatcaatctggagattcctcag
aatattggaaatagatataccttaaaacccagctataccactcttgggca
tatacacaaaagatgcccaaccatgacacaggggcttgtgttgcattatg
ttcagagtggccttacttgtgatagccaggatctggaaacaacccagatg
ccccacaatggaagaatcgacactgaaatatggttcatttacacaatgga
gtattattcatctattaagaacaacgacatcaggagctttggaggaaaat
ggattgaactagaaaattccatcctgagtgaggcaactcagacccaaaaa
aggacatgcatagtatgtacacactaacaaatggatatcagccaaaaaaa
gtatataataaaacataaatgacgaaagagggttaaaaagctcaagtttc
caagtgaggatgtctcaataccagttgggagacagaggaaagcatttatg
gggaaagaaggggggagagaactgagtggaagcagggacagagaggggaa
ggggaaacatgatcagtcattgtgagggatgggggaggactgaagccctg
agaaccagtagaaaaaatggaaatagacagcctcaggaggtaggctatgg
aggtccatctcacatgttccaaagacctaggaggtgacagactcccagga
ctcaaaggaagagaccttggaataaagtgctgtccagtggagggacatgc
atcaagtggagttgatggagttggaaatcctattacacaatacttctgat
ccagaatgttcttgtggaagattctcagggaacaaaaactgagaaaaaca
ttatgagaaaagagcctaggtacaggctccaatttgagattcctacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145916371_145917550
seq2: B6Ng01-292M01.b_43_1209

seq1  GAATTCTGTTTAGATCTGTTCCTCATTTTTTAATTGGTTTATTTGTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTAGATCTGTTCCTCATTTTTTAATTGGTTTATTTGTATTT  50

seq1  TAAAAAGTATATGGTTCCTTGAGTTCTTTATATATTTTAGATACTAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTATATGGTTCCTTGAGTTCTTTATATATTTTAGATACTAGCCC  100

seq1  TCTATTGGATGTGGAATTGGTTTAAAAAAATCTTTTCCCATTACATAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGGATGTGGAATTGGTTTAAAAAAATCTTTTCCCATTACATAGGC  150

seq1  TGTTATATGGTCTGATTGATGGTGCCCTTTGTCTTACAGAAAGTTTTCAA  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATGGTCTGATTGATGGTGCCCTTTGTCTTACAGAAAGTTTTCAA  200

seq1  ATTTTTGCGGTCCTGTTTATTAATTCTTGATCTTAGAGCCTAAACTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCGGTCCTGTTTATTAATTCTTGATCTTAGAGCCTAAACTAATG  250

seq1  GTGTTCTGGTCACATAGTCTTCTACTGTGCCATTGACTTTAAGGGTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGGTCACATAGTCTTCTACTGTGCCATTGACTTTAAGGGTAGTC  300

seq1  CCCATTTTCTATTTTATTATATTCAGTGTAACTAGTTTTATGTTGAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTCTATTTTATTATATTCAGTGTAACTAGTTTTATGTTGAAGTC  350

seq1  TTTGAATCATTTAGAGTTAAGGTTTGTGAAAAGTACTACGTATGGATCTA  400
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTGAATCATTTAGAGTTGAGGTTTGTGAAAAGTACTACGTATGGATCTA  400

seq1  TTTTCATTCTTCTACATTGAGCTTTCTAAATCTTCTGAATCCCCACCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCTTCTACATTGAGCTTTCTAAATCTTCTGAATCCCCACCTGA  450

seq1  TCTTTGGCCATGCAGCTGCTTGCTGACATCCTTGCTTAATTTGAAAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCCATGCAGCTGCTTGCTGACATCCTTGCTTAATTTGAAAGGTA  500

seq1  TGACTTTCTCTCAATCTCCCTCTCCCTGGCAACTGCTAAGATTTGTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGACTTTCTCTCAATCTCCCTCTCCCTGGCAACTGCTAAGATTTGCAACT  550

seq1  TGCTTGACTGTTATTTTCCTCTCAAGATCTAATAAAGGGCCCTTTCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGACTGTTATTTTCCTCTCAAGATCTAATAAAGGGCCCTTTCTTTT  600

seq1  CCTAATAAGTCCACTTTTAATTCATTTTATTAATAAGACTAAGAACTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAAGTCCACTTTTAATTCATTTTATTAATAAGACTAAGAACTTTG  650

seq1  AAAAGAAACTCAGTTTCTCCAGTAACATGAACAACCATAAAGGGACATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACTCAGTTTCTCCAGTAACATGAACAACCATAAAGGGACATTA  700

seq1  AAACGTTTCTCAGGGGATACAGCAGGTGATCTTGTTCCAGGACTTTAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTTTCTCAGGGGATACAGCAGGTGATCTTGTTCCAGGACTTTAGGT  750

seq1  GGGTAAGCACTTGCTGGTGGGTCAAACCTACAGTGAATACTCTCTGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGCACTTGCTGGTGGGTCAAACCTACAGTGAATACTCTCTGAATA  800

seq1  AGCTTTCTCTAGGAGGGATTCAATCTCCAGGCTTTATCACTCTGTCTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTCTAGGAGGGATTCAATCTCCAGGCTTTATCACTCTGTCTTGT  850

seq1  CTCAGGCATATAAGCCTTTTGAACTGACTCTGTTTCCTGTGAAGGAGGGA  900
      |||| |||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCA-GCATATAAGCCTTTTGAACTGACTCTGTCTCCTGTGAAGGAGGGA  899

seq1  AAAGGTTCCTATTTTCGCCCATCCCTGCCTCCCTTTAGTAGCGATAAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTCCTATTTTCGCCCATCCCTGCCTCCCTTTAGTAGCGATAAGAG  949

seq1  CAAACTATGGAGTATATATGCAATGCCTCCCTCCACCCTACCCTCTCTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTATGGAGTATATATGCAATGCCTCCCTCCACCCTACCCTCTCTGC  999

seq1  TCTGTCACCATTCCCCATGCTGCCCCAGTAGAGCAGCACAAAGTACTGGG  1050
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  TCTGTCA-CATTCCCCATGCTG-CCCAGTAGAGCAGCACAAAGTACTGGG  1047

seq1  T-ATATTTCCTATTCTTCCTCATTTCCTTCAGTGTTTCCATTGCCTTGGA  1099
      | |||||||||| |||  ||||||||  ||||||||||||||||||  ||
seq2  TAATATTTCCTA-TCT--CTCATTTC--TCAGTGTTTCCATTGCCT--GA  1090

seq1  TTATCTTCATGTTCTT-TATGGTATGGACCTCATT-CTCGTGGATGATTC  1147
       |||| ||||||||||  |||||||||| |||||| ||||  ||||||  
seq2  -TATC-TCATGTTCTTAAATGGTATGGAACTCATTCCTCG-CGATGAT--  1135

seq1  CTTGTTTCCTTCTGATTCACTGCTTAG-CTATTT  1180
      | ||||||  || |||||||||||||| ||||||
seq2  CATGTTTC--TCGGATTCACTGCTTAGCCTATTT  1167