BAC Information

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BAC

Clone NameB6Ng01-292N09
Chromosome4 (Build37)
Map Location 74,974,285 - 74,975,402
singlet/doubletsinglet
Overlap genenone
Upstream geneJmjd2c, LOC100040258, LOC100039814, LOC636847, 3110001D03Rik, LOC623529
Downstream geneLOC100039833, LOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292N09.bB6Ng01-292N09.g
ACCGA089372GA089373
length1,114951
definitionB6Ng01-292N09.b B6Ng01-292N09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtttttgctctctaggacacatgaagtttgttattccttcctg
tgctcccatttttcatggtgttttttgatcttcttattttcagtcctaaa
ctaagaatatgtgagctcaccagaaaagagcctagcattcacaagtcatt
tgtaacatgattggattctctgcctagtgacagtgaaacccagccagtgt
tttagcgaccataaaaaaataaaaaattgcgtaaacactttccaaagaac
caatgggaaaaaaatggattacctcacttctaaactgagacaactataaa
gaggcacttaggaaatgtttaaaaaccaagaatcagagatacagaattga
aaattaaatctatgtgatgagaaagcaatcctgtttttgcacgatggggc
acaggagacaggaccccaaaatattaatagttggtttttctaacttcata
ctatagagttttccaaagtaaatagtctctatcatgaataactgtctcca
aaactatcagactttatatttagtactgtggtagctgctgttcctagtga
gttcatgtaaagaatagaaaattaaaatttgcatggaacctttcaatagt
caacgaattagagtgtaagctctacaaaagccttttcaagtaatgataat
ttatttttatcattccctttccctcctgtattcttagaaactattggaat
tatattgatattcatttttaactcagatgtttatgatttgcctgacaact
acaattctcaactatttaaatagagaagacagatgaatatagaatatacc
atgagttgatgttgctgagtacagaacttcaagactttgtgactattctt
tatccataatagtcattcatttgtcacacaagtatttactctggacacat
tgcattaattaagataattttaaaactagaaagaaacctccaatgattaa
tattattatattctaaaattctaagtgttaaaattcttgagatgaaatca
tgaaggataacagtgtcagatgtcgatattctggaagctatatttcccaa
acacaaagtatatagagaaaatctagactatgtaggagaggcctagaagt
tgattttaaaaaaa

gaattcaaggcagttctccactttctcttctattcgatgtaatgcgtctg
attttatgttgatgtctttaatccacttggacttgagttttctgtatggt
gataaatacaggttctgttttcattcttctacatgcagatattcagttag
accagtgctatttactaaaacactttttcccaatttgagcatctttgtca
aaaatcaagtgttgctaggtatgtggctttatttctgagtctttaactct
attccattgatcaacttgcctgtttttatgtcagtactgtgcagttactg
aagaaacgtaaaacaaaaggactctgaagttccatcttgcacctttcaga
atagctaagcccaaaaattcaagtgataaatcatgctcgtgagactacag
agaaaggggaaccctcctcaattgctggtgagagtgaaaatttgtacaat
cactttggaaatcaatttgaaagtttctcagaaaattttgaatagttcta
cctcaagatccagctatattgctcaaggcaatatacctaaaaaatgttcc
accacttgctcaactatgtttgtagcagctttatttgtaacagacagaaa
ctggaaaaattagatgtctctcaactgaagaatggattaaaaaaaatgtg
gtgcatttacaaaatggagtactacatagctcttaaaaactatttgcagg
caaatggatggaagtagaaaatatcatcctgatggaggtagcccagacat
agaaagacacatgttatgtactcacttaaaagttataacataacaggtat
agcatacccatgtgacaatccacagacccaaagaagataagtaacaagga
gggcccaagaaaggatgtttgaatctcagtaggaagcggatataaaagag
gcattgaaagtggaggcacctgggaaggtgagggtggtgggtaaggtaac
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_74974285_74975402
seq2: B6Ng01-292N09.b_47_1160 (reverse)

seq1  TTTTTTCAAAATTCAACTTCTA-GCCTCTCTTACATAGTCTAGATTTTCT  49
      |||||| |||| |||||||||| ||||||| |||||||||||||||||||
seq2  TTTTTTTAAAA-TCAACTTCTAGGCCTCTCCTACATAGTCTAGATTTTCT  49

seq1  CCTATATACTTTGTGTTTTGGGAAATTATAGCTTCCAGAATATCGACATC  99
       |||||||||||||| ||||||||| ||||||||||||||||||||||||
seq2  -CTATATACTTTGTG-TTTGGGAAA-TATAGCTTCCAGAATATCGACATC  96

seq1  TGACACTGTTATCCTTCATGATTTTCATCTTCAAGAA-TTTAACACTTAG  148
      ||||||||||||||||||||| ||||||| ||||||| ||||||||||||
seq2  TGACACTGTTATCCTTCATGA-TTTCATC-TCAAGAATTTTAACACTTAG  144

seq1  AATTTTAGAATATAATAATATTAATCATTGGAGGTTTCTTTCTAGTTTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAGAATATAATAATATTAATCATTGGAGGTTTCTTTCTAGTTTTA  194

seq1  AAATTATCTTAATTAATGCAATGTGTCCAGAGTAAATACTTGTGTGACAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATCTTAATTAATGCAATGTGTCCAGAGTAAATACTTGTGTGACAA  244

seq1  ATGAATGACTATTATGGATAAAGAATAGTCACAAAGTCTTGAAGTTCTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGACTATTATGGATAAAGAATAGTCACAAAGTCTTGAAGTTCTGT  294

seq1  ACTCAGCAACATCAACTCATGGTATATTCTATATTCATCTGTCTTCTCTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCAACATCAACTCATGGTATATTCTATATTCATCTGTCTTCTCTA  344

seq1  TTTAAATAGTTGAGAATTGTAGTTGTCAGGCAAATCATAAACATCTGAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAGTTGAGAATTGTAGTTGTCAGGCAAATCATAAACATCTGAGT  394

seq1  TAAAAATGAATATCAATATAATTCCAATAGTTTCTAAGAATACAGGAGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGAATATCAATATAATTCCAATAGTTTCTAAGAATACAGGAGGG  444

seq1  AAAGGGAATGATAAAAATAAATTATCATTACTTGAAAAGGCTTTTGTAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAATGATAAAAATAAATTATCATTACTTGAAAAGGCTTTTGTAGA  494

seq1  GCTTACACTCTAATTCGTTGACTATTGAAAGGTTCCATGCAAATTTTAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACACTCTAATTCGTTGACTATTGAAAGGTTCCATGCAAATTTTAAT  544

seq1  TTTCTATTCTTTACATGAACTCACTAGGAACAGCAGCTACCACAGTACTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTCTTTACATGAACTCACTAGGAACAGCAGCTACCACAGTACTA  594

seq1  AATATAAAGTCTGATAGTTTTGGAGACAGTTATTCATGATAGAGACTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAAAGTCTGATAGTTTTGGAGACAGTTATTCATGATAGAGACTATT  644

seq1  TACTTTGGAAAACTCTATAGTATGAAGTTAGAAAAACCAACTATTAATAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGGAAAACTCTATAGTATGAAGTTAGAAAAACCAACTATTAATAT  694

seq1  TTTGGGGTCCTGTCTCCTGTGCCCCATCGTGCAAAAACAGGATTGCTTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTCCTGTCTCCTGTGCCCCATCGTGCAAAAACAGGATTGCTTTC  744

seq1  TCATCACATAGATTTAATTTTCAATTCTGTATCTCTGATTCTTGGTTTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACATAGATTTAATTTTCAATTCTGTATCTCTGATTCTTGGTTTTT  794

seq1  AAACATTTCCTAAGTGCCTCTTTATAGTTGTCTCAGTTTAGAAGTGAGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTCCTAAGTGCCTCTTTATAGTTGTCTCAGTTTAGAAGTGAGGT  844

seq1  AATCCATTTTTTTCCCATTGGTTCTTTGGAAAGTGTTTACGCAATTTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTTTTTTCCCATTGGTTCTTTGGAAAGTGTTTACGCAATTTTTT  894

seq1  ATTTTTTTATGGTCGCTAAAACACTGGCTGGGTTTCACTGTCACTAGGCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTATGGTCGCTAAAACACTGGCTGGGTTTCACTGTCACTAGGCA  944

seq1  GAGAATCCAATCATGTTACAAATGACTTGTGAATGCTAGGCTCTTTTCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCCAATCATGTTACAAATGACTTGTGAATGCTAGGCTCTTTTCTG  994

seq1  GTGAGCTCACATATTCTTAGTTTAGGACTGAAAATAAGAAGATCAAAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTCACATATTCTTAGTTTAGGACTGAAAATAAGAAGATCAAAAAA  1044

seq1  CACCATGAAAAATGGGAGCACAGGAAGGAATAACAAACTTCATGTGTCCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGAAAAATGGGAGCACAGGAAGGAATAACAAACTTCATGTGTCCT  1094

seq1  AGAGAGCAAAAACTGAATTC  1118
      ||||||||||||||||||||
seq2  AGAGAGCAAAAACTGAATTC  1114


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