BAC Information

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BAC

Clone NameB6Ng01-292O02
Chromosome4 (Build37)
Map Location 42,727,824 - 42,863,289
singlet/doubletdoublet
Overlap geneLOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698
Upstream geneLOC100039789, LOC623085, LOC100042466, LOC100042472, LOC100042493, Ccl19-ps1, LOC621580, LOC545611, LOC100042524, LOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962
Downstream geneBC049635, N28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292O02.bB6Ng01-292O02.g
ACCGA089402GA089403
length1,1541,136
definitionB6Ng01-292O02.b B6Ng01-292O02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,727,824 - 42,728,977)(42,862,171 - 42,863,289)
sequence
gaattccagcagccttcctgcgtgctctgggaagatgtccctggtgggat
gtaaaaagggcttccttgccaaggaagtttttactgtcttagcctcactg
ggtgcttcacacagcattcagcgctggttttggaggaggagagctggcag
gccccactgaagcttgctgagttgtttctttaggaggtggcgttccagtg
cttcacactcagccagcgacaggaacgggacagtaatctgtgctccttca
cgctcacagggagtcttgccattcagagaggtcggggaagagggaaaggc
tgacttacatggtgttttgggtaagaaaaggcccgagagtacccctgagg
gctgagcatctgtggagggcttggacatatcccttttcttgcaggtacct
tgagaactcaaggaagtaacatccaaggactcactgtgaagagatggaag
gccacagaataactggctataatattcactctgaagattgtcccctgagt
cattagcttttgccctggggagtggatagaaattccttagatgttcacct
tcatgagagggcaagcaagtatgaatttggtgccagggccttccttgttg
caggtttataacaggccatttggaaacccagaaggtctggacgggctggc
ctgccgaatacaagctgctggtcttgtgggaaacgatcccagttctgtcc
tcaatgaccttagaactgctgctcagagtgcaggaagatggattttctcg
agatcgacgaaataatgttgggtctggcatgagctgcctcagggactcct
ccacacgtctcggaagaccccacttctggaaatgtatgcatttttttacc
tgtagtcaagaagcccacggactttaggactaagtaatggcagatgggaa
gacagcattgagtccatatgtaaggacatagtatgttgtcaagcttgggt
ccaggggttagtaaagacacagagggcttccatgtgatgaaggtcttggc
tttcctgtcaagcttgccttgcttgcacctattgtttcctcaatcataaa
accattaggtttcctttgagcctggaagactcacaggtctctgagaccat
gggccatgttggcagatgaattttggtctagcctggaacgatcagtccag
catt
gaattccacctgcagaagcggctgattcaccttcgctgggggctgcccca
gaggatccagcgctccataaatatgctgctctcctcaacagacccgcagt
ccctgccctgcggtggcagtaggctacctaatgtgagcatctcacagcca
gggaaaccagaggcctatgggtctggtgatacgttcttacccacagcggg
caaaggaacaacccccatgccacacttgtttgccaaggcacaggaaatgt
tgaaaagccattttgataccaaatgtgaacagatccgggagggcaaggtc
ccggcctgtgtccaaagcgcctggaaaggcagaattcctggggatttggc
agcagggactttattcccaaacattccacaaggtcagcccctggagcttc
aggcagaaaacaaccctgacctacatcaagaagctgtttcctggaaacca
atggaccttgaccaggaggctcaggccttttcaggtgttttcattgaaca
ctgtaggcgaccccaagccctgtctgaggaaaccattaagaaactggaga
caactctgagacataagtatttggccttcctgtcaggcctgcaggccctt
tactgcatggccccaactaaagcaacatccccaactgttgaccaatctgt
aatcacaactatgccctggtctgtcaaaagcccacagaagcccctatctc
agaagtctccacttgaagccctatgcctgagtgggcttgagccctgtact
caagatgacaaggagacttctgcaaacattgcagaagagttccagcatgg
agctcaggggcatggaaggacagagtaaggtgcctccagagagacagcct
ctcctgaatagaccctactcattaggacacagagatcatggagagagtga
gtttctacctgaaaaggaaaggctctgggatataaagttgggaaattttc
tcttaaaaagagaagtgtgttccaaggagccaactgcacaagaacttggg
agagttgaattcttgttcaggagcctctcaggagttccacggtaagcaca
ctgctacaggaccggcccaactttatgtcacgtcctgtagccccagattc
agaataagtcttgcctaaaacagcccagctactgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_42727824_42728977
seq2: B6Ng01-292O02.b_45_1198

seq1  GAATTCCAGCAGCCTTCCTGCGTGCTCTGGGAAGATGTCCCTGGTGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAGCCTTCCTGCGTGCTCTGGGAAGATGTCCCTGGTGGGAT  50

seq1  GTAAAAAGGGCTTCCTTGCCAAGGAAGTTTTTACTGTCTTAGCCTCACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGGGCTTCCTTGCCAAGGAAGTTTTTACTGTCTTAGCCTCACTG  100

seq1  GGTGCTTCACACAGCATTCAGCGCTGGTTTTGGAGGAGGAGAGCTGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTCACACAGCATTCAGCGCTGGTTTTGGAGGAGGAGAGCTGGCAG  150

seq1  GCCCCACTGAAGCTTGCTGAGTTGTTTCTTTAGGAGGTGGCGTTCCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACTGAAGCTTGCTGAGTTGTTTCTTTAGGAGGTGGCGTTCCAGTG  200

seq1  CTTCACACTCAGCCAGCGACAGGAACGGGACAGTAATCTGTGCTCCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACACTCAGCCAGCGACAGGAACGGGACAGTAATCTGTGCTCCTTCA  250

seq1  CGCTCACAGGGAGTCTTGCCATTCAGAGAGGTCGGGGAAGAGGGAAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCACAGGGAGTCTTGCCATTCAGAGAGGTCGGGGAAGAGGGAAAGGC  300

seq1  TGACTTACATGGTGTTTTGGGTAAGAAAAGGCCCGAGAGTACCCCTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACATGGTGTTTTGGGTAAGAAAAGGCCCGAGAGTACCCCTGAGG  350

seq1  GCTGAGCATCTGTGGAGGGCTTGGACATATCCCTTTTCTTGCAGGTACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGCATCTGTGGAGGGCTTGGACATATCCCTTTTCTTGCAGGTACCT  400

seq1  TGAGAACTCAAGGAAGTAACATCCAAGGACTCACTGTGAAGAGATGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACTCAAGGAAGTAACATCCAAGGACTCACTGTGAAGAGATGGAAG  450

seq1  GCCACAGAATAACTGGCTATAATATTCACTCTGAAGATTGTCCCCTGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGAATAACTGGCTATAATATTCACTCTGAAGATTGTCCCCTGAGT  500

seq1  CATTAGCTTTTGCCCTGGGGAGTGGATAGAAATTCCTTAGATGTTCACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGCTTTTGCCCTGGGGAGTGGATAGAAATTCCTTAGATGTTCACCT  550

seq1  TCATGAGAGGGCAAGCAAGTATGAATTTGGTGCCAGGGCCTTCCTTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGAGGGCAAGCAAGTATGAATTTGGTGCCAGGGCCTTCCTTGTTG  600

seq1  CAGGTTTATAACAGGCCATTTGGAAACCCAGAAGGTCTGGACGGGCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTATAACAGGCCATTTGGAAACCCAGAAGGTCTGGACGGGCTGGC  650

seq1  CTGCCGAATACAAGCTGCTGGTCTTGTGGGAAACGATCCCAGTTCTGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGAATACAAGCTGCTGGTCTTGTGGGAAACGATCCCAGTTCTGTCC  700

seq1  TCAATGACCTTAGAACTGCTGCTCAGAGTGCAGGAAGATGGATTTTCTCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGACCTTAGAACTGCTGCTCAGAGTGCAGGAAGATGGATTTTCTCG  750

seq1  AGATCGACGAAATAATGTTGGGTCTGGCATGAGCTGCCTCAGGGACTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGACGAAATAATGTTGGGTCTGGCATGAGCTGCCTCAGGGACTCCT  800

seq1  CCACACGTCTCGGAAGACCCCACTTCTGGAAATGTATGCATTTTTTTACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACGTCTCGGAAGACCCCACTTCTGGAAATGTATGCATTTTTTTACC  850

seq1  TGTAGTTCAAGAAGCCCACGGACTTTAGGACTAAGTAATGGCAGATGGGA  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAG-TCAAGAAGCCCACGGACTTTAGGACTAAGTAATGGCAGATGGGA  899

seq1  AGACAGCATTGAGTCCATATGTAAGGACATAGTATG-TGTCAAGCTTGGG  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGACAGCATTGAGTCCATATGTAAGGACATAGTATGTTGTCAAGCTTGGG  949

seq1  TCCAGGGG-TAGTAAAGACACAGAGGGCTT-CATGTGATGAAGGTCTTGG  997
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  TCCAGGGGTTAGTAAAGACACAGAGGGCTTCCATGTGATGAAGGTCTTGG  999

seq1  CTTTCCTGGTCAAGCTTTGCTTTGCTTTGCA-CTATTGTTTCCTCAATCA  1046
      ||||||| ||||||| |||| |||| ||||| ||||||||||||||||||
seq2  CTTTCCT-GTCAAGC-TTGCCTTGC-TTGCACCTATTGTTTCCTCAATCA  1046

seq1  TTAAAACCA-TAGGTT--CCTTGAGCCTTGAAGAACTCACA-GTCTCTGA  1092
       |||||||| ||||||  | |||||||| |||| ||||||| ||||||||
seq2  -TAAAACCATTAGGTTTCCTTTGAGCCTGGAAG-ACTCACAGGTCTCTGA  1094

seq1  GACCATGGG-CATGTTGGCGAGATGAAAATTTTGGTCTAG-CTGGAGACG  1140
      ||||||||| ||||||||| |||||  ||||||||||||| ||||| |||
seq2  GACCATGGGCCATGTTGGC-AGATG--AATTTTGGTCTAGCCTGGA-ACG  1140

seq1  ATCAGTCCAGCATT  1154
      ||||||||||||||
seq2  ATCAGTCCAGCATT  1154

seq1: chr4_42862171_42863289
seq2: B6Ng01-292O02.g_68_1203 (reverse)

seq1  TGCAGTAGCT-GGCTGTTTAAGGC-AGACCTTATCTGGATCTGGGGCTAC  48
      |||||||||| |||||||| |||| |||| |  |||| ||||||||||||
seq2  TGCAGTAGCTGGGCTGTTTTAGGCAAGACTTATTCTGAATCTGGGGCTAC  50

seq1  AGGAACGTGACAT-AAGGTGGGCGGTCCCTGTAGCAGTGTGCTTTCCCGT  97
      ||| ||||||||| ||| ||||| |  ||||||||||||||| || ||||
seq2  AGG-ACGTGACATAAAGTTGGGCCGGTCCTGTAGCAGTGTGC-TTACCGT  98

seq1  GG-ACTCCTGAGAGGCTCCTGAACA--GATTC-ACTCT-CCAAG-TCTGT  141
      || ||||||||||||||||||||||   |||| ||||| ||||| |||  
seq2  GGAACTCCTGAGAGGCTCCTGAACAAGAATTCAACTCTCCCAAGTTCTTG  148

seq1  TGCAGTTGGCT-CTTGGAACACAC-TCTCTTTT--AGAGAAA--TTCCCA  185
      ||||||||||| |||||||||||| ||||||||  |||||||  ||||||
seq2  TGCAGTTGGCTCCTTGGAACACACTTCTCTTTTTAAGAGAAAATTTCCCA  198

seq1  ACTTTATAT-CCAGAGCC-TTCCTTTTCAGGTAGAAACTCACTCTCTCCA  233
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  ACTTTATATCCCAGAGCCTTTCCTTTTCAGGTAGAAACTCACTCTCTCCA  248

seq1  TGATCTCTGTGT-CTAATGAGTAGGGTCTATTCAGGAGAGGCTGTCTCTC  282
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGATCTCTGTGTCCTAATGAGTAGGGTCTATTCAGGAGAGGCTGTCTCTC  298

seq1  TGGAGGCACCTT-CTCTGTCCTTCCATGCCCCTGAGCTCCATGCTGGAAC  331
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGGAGGCACCTTACTCTGTCCTTCCATGCCCCTGAGCTCCATGCTGGAAC  348

seq1  TCTTCTGCAATGTTTGCAGAAGTCTCCTTGTCATCTTGAGTACAGGGCTC  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCAATGTTTGCAGAAGTCTCCTTGTCATCTTGAGTACAGGGCTC  398

seq1  AAGCCCACTCAGGCATAGGGCTTCAAGTGGAGACTTCTGAGATAGGGGCT  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCACTCAGGCATAGGGCTTCAAGTGGAGACTTCTGAGATAGGGGCT  448

seq1  TCTGTGGGCTTTTGACAGACCAGGGCATAGTTGTGATTACAGATTGGTCA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGCTTTTGACAGACCAGGGCATAGTTGTGATTACAGATTGGTCA  498

seq1  ACAGTTGGGGATGTTGCTTTAGTTGGGGCCATGCAGTAAAGGGCCTGCAG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGGGGATGTTGCTTTAGTTGGGGCCATGCAGTAAAGGGCCTGCAG  548

seq1  GCCTGACAGGAAGGCCAAATACTTATGTCTCAGAGTTGTCTCCAGTTTCT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACAGGAAGGCCAAATACTTATGTCTCAGAGTTGTCTCCAGTTTCT  598

seq1  TAATGGTTTCCTCAGACAGGGCTTGGGGTCGCCTACAGTGTTCAATGAAA  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTTTCCTCAGACAGGGCTTGGGGTCGCCTACAGTGTTCAATGAAA  648

seq1  ACACCTGAAAAGGCCTGAGCCTCCTGGTCAAGGTCCATTGGTTTCCAGGA  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGAAAAGGCCTGAGCCTCCTGGTCAAGGTCCATTGGTTTCCAGGA  698

seq1  AACAGCTTCTTGATGTAGGTCAGGGTTGTTTTCTGCCTGAAGCTCCAGGG  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCTTCTTGATGTAGGTCAGGGTTGTTTTCTGCCTGAAGCTCCAGGG  748

seq1  GCTGACCTTGTGGAATGTTTGGGAATAAAGTCCCTGCTGCCAAATCCCCA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCTTGTGGAATGTTTGGGAATAAAGTCCCTGCTGCCAAATCCCCA  798

seq1  GGAATTCTGCCTTTCCAGGCGCTTTGGACACAGGCCGGGACCTTGCCCTC  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTGCCTTTCCAGGCGCTTTGGACACAGGCCGGGACCTTGCCCTC  848

seq1  CCGGATCTGTTCACATTTGGTATCAAAATGGCTTTTCAACATTTCCTGTG  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGATCTGTTCACATTTGGTATCAAAATGGCTTTTCAACATTTCCTGTG  898

seq1  CCTTGGCAAACAAGTGTGGCATGGGGGTTGTTCCTTTGCCCGCTGTGGGT  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGCAAACAAGTGTGGCATGGGGGTTGTTCCTTTGCCCGCTGTGGGT  948

seq1  AAGAACGTATCACCAGACCCATAGGCCTCTGGTTTCCCTGGCTGTGAGAT  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACGTATCACCAGACCCATAGGCCTCTGGTTTCCCTGGCTGTGAGAT  998

seq1  GCTCACATTAGGTAGCCTACTGCCACCGCAGGGCAGGGACTGCGGGTCTG  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACATTAGGTAGCCTACTGCCACCGCAGGGCAGGGACTGCGGGTCTG  1048

seq1  TTGAGGAGAGCAGCATATTTATGGAGCGCTGGATCCTCTGGGGCAGCCCC  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAGAGCAGCATATTTATGGAGCGCTGGATCCTCTGGGGCAGCCCC  1098

seq1  CAGCGAAGGTGAATCAGCCGCTTCTGCAGGTGGAATTC  1119
      ||||||||||||||||||||||||||||||||||||||
seq2  CAGCGAAGGTGAATCAGCCGCTTCTGCAGGTGGAATTC  1136