BAC Information

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BAC

Clone NameB6Ng01-292O17
Chromosome4 (Build37)
Map Location 18,688,951 - 18,819,976
singlet/doubletdoublet
Overlap geneLOC667251, LOC435772
Upstream geneMmp16
Downstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292O17.bB6Ng01-292O17.g
ACCGA089431GA089432
length1,1641,064
definitionB6Ng01-292O17.b B6Ng01-292O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,688,951 - 18,690,043)(18,818,914 - 18,819,976)
sequence
gaattcatcctgtctaaaagaactgaagagtcaaaaatggagaagatatt
gagggaagggcccaacttggatccatctcctgctggagtgggggagggga
gcataccaaggcctgaaactattactgatgttgtgatgtgcttacaattg
ggaacctggcatggttgtcctctaagaggccctaccagcagttaactgag
acagactcatatattttcacggaaccaatggacaaaagaaaggggcccct
atgtttgaattgggacaagttttgaagaaactgaaggggggaagactcca
tgagaagaccagaagtctcaactaacccagaccccagggtgttcccagag
ctaagtcgccaaacaggagcatacatgagcctgtccgaggcctctggcac
atatatagtagaggtctggctggtctgacttcagtaagagaagatgtgct
taatccttgagagacttgaggcccggggaatggaggagtcctagcaaggg
gaagcaccctcttgtagcaaggggaaggaggaataggataaggaactctg
ggaggggagatgactgaaatgtaaataagtaaaataaattcagaaaaaaa
agagagagaatagaagggcctatatgaatgatagactatttcaactaggt
tttgtgcagaatcactaatgcacaatggctgagcaatactattgcattat
gacagtactacacaaaaatcatttactgtattttaacttttggctattgt
atcttcaaattacttataaaattaaaaaagacaattaagatatcatgaaa
agaacaatgaaacctttaaaagaaacatggaagtatttatgattttctag
aagaaatagttaccattcaagggaactaaatacaaatttggttatatata
atttaagagatttatttcttggtaaaactcaaatcatttccaaaaggatc
tcgggagtttactgcttggttattatttagactaaaaaaaaaaaagagag
agagaagagaaaaaggaaatgctttcacaagcattccacacattgacagc
ttgagggccaagagcttgacagaatttctaagcttctataaacgtcctgt
tatttacctctaaatgcttcatgaatgataacacttacatcatccgttct
tcacatttgtaatc

gaattcatctggcagacacatctctgagcctgcctttgaaggatcatctt
tactagattgaggtagaaaggcactctcatggtaactggccccattattt
ctgatggaacctgaaataaacaggagaaaaatgagctgagcacatgaata
caactctcctttgattcccagttgtaaatctagtgtgaccagggtgtctc
aagcttctgcaacactgacagtaatttcactatgggttctactacattga
acttaattttccattttcagaatttttttccaacaacagaaaagtaacta
aggcaggagtctatacttgatcacatacatgttaaatgctttggaagagt
gtcaagttactaacacaaagtttgatgagatgttagagatgggaagtttt
ctcctgggagaggaggaagctgaaatgaagtctaatgaagtctaaggaaa
agtagtaactgtctttggtacaagaacagaaggagttaaaatattattat
aaaacttaatgattcaaataggtatttaagaaggaaagtggctgcattag
tttaggcaaaccttacacctcatggcttagaagatttcattcaaaggctc
ccttgacttctgggttaaaatttagtccttgattcctccagctcgagaca
gaaaaataatggacagtttaattcaggacccctactagtgtcagtgtcaa
gctcccaaaaaatcctcctgtgtgttctttgtaaatctagaggagttacc
ggcatcctgcccatcttatgagatattccatctgatgactacatgaccac
aaagaagagttcttccagggttttactctcttaccacccaaggtattttt
tcctttgagtgggatcttgaataataaaaagaataaaatcaaaacaaatg
ctttataattagtatcatgtcaagacatactaaaagatttaaaaagagaa
ctaagaaaagaacccaatgaacagaaatgggttatgtaaaggcaaatgag
atttttattttaaaaaatgaagtgtagctatcatgggacgaataatccct
aaaaggtcacaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_18688951_18690043
seq2: B6Ng01-292O17.b_134_1212

seq1  GAGTGGGGGAGGGGAGCATACCAAGGCCTGAAACTATTACTGATGTTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGGGGAGGGGAGCATACCAAGGCCTGAAACTATTACTGATGTTGTG  50

seq1  ATGTGCTTACAATTGGGAACCTGGCATGGTTGTCCTCTAAGAGGCCCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTTACAATTGGGAACCTGGCATGGTTGTCCTCTAAGAGGCCCTAC  100

seq1  CAGCAGTTAACTGAGACAGACTCATATATTTTCACGGAACCAATGGACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTAACTGAGACAGACTCATATATTTTCACGGAACCAATGGACAA  150

seq1  AAGAAAGGGGCCCCTATGTTTGAATTGGGACAAGTTTTGAAGAAACTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGGGCCCCTATGTTTGAATTGGGACAAGTTTTGAAGAAACTGAA  200

seq1  GGGGGGAAGACTCCATGAGAAGACCAGAAGTCTCAACTAACCCAGACCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGAAGACTCCATGAGAAGACCAGAAGTCTCAACTAACCCAGACCCC  250

seq1  AGGGTGTTCCCAGAGCTAAGTCGCCAAACAGGAGCATACATGAGCCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGTTCCCAGAGCTAAGTCGCCAAACAGGAGCATACATGAGCCTGTC  300

seq1  CGAGGCCTCTGGCACATATATAGTAGAGGTCTGGCTGGTCTGACTTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCCTCTGGCACATATATAGTAGAGGTCTGGCTGGTCTGACTTCAGT  350

seq1  AAGAGAAGATGTGCTTAATCCTTGAGAGACTTGAGGCCCGGGGAATGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGATGTGCTTAATCCTTGAGAGACTTGAGGCCCGGGGAATGGAG  400

seq1  GAGTCCTAGCAAGGGGAAGCACCCTCTTGTAGCAAGGGGAAGGAGGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTAGCAAGGGGAAGCACCCTCTTGTAGCAAGGGGAAGGAGGAATA  450

seq1  GGATAAGGAACTCTGGGAGGGGAGATGACTGAAATGTAAATAAGTAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGGAACTCTGGGAGGGGAGATGACTGAAATGTAAATAAGTAAAAT  500

seq1  AAATTCAGAAAAAAAAGAGAGAGAATAGAAGGGCCTATATGAATGATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGAAAAAAAAGAGAGAGAATAGAAGGGCCTATATGAATGATAGA  550

seq1  CTATTTCAACTAGGTTTTGTGCAGAATCACTAATGCACAATGGCTGAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCAACTAGGTTTTGTGCAGAATCACTAATGCACAATGGCTGAGCA  600

seq1  ATACTATTGCATTATGACAGTACTACACAAAAATCATTTACTGTATTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATTGCATTATGACAGTACTACACAAAAATCATTTACTGTATTTTA  650

seq1  ACTTTTGGCTATTGTATCTTCAAATTACTTATAAAATTAAAAAAGACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGGCTATTGTATCTTCAAATTACTTATAAAATTAAAAAAGACAAT  700

seq1  TAAGATATCATGAAAAGAACAATGAAACCTTTAAAAGAAACATGGAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATCATGAAAAGAACAATGAAACCTTTAAAAGAAACATGGAAGTA  750

seq1  TTTATGATTTTCTAGAAGAAATAGTTACCATTCAA-GGAACTAAATACAA  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTATGATTTTCTAGAAGAAATAGTTACCATTCAAGGGAACTAAATACAA  800

seq1  ATTTGGTTATATATAA-TTAAGAGATTTATTTCTTGGTAAAACTCAAATC  848
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTTGGTTATATATAATTTAAGAGATTTATTTCTTGGTAAAACTCAAATC  850

seq1  ATTTCAAAAAGGATCTCGGGAGTTTACTGCTTGGTTA-TATTTAGACTAA  897
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTTCCAAAAGGATCTCGGGAGTTTACTGCTTGGTTATTATTTAGACTAA  900

seq1  AAAAAAAAAAAAAGAAGAAGAAGAAGAAAGA-AAGAAAAAAAGAAAAATG  946
      ||||||||||              ||| ||| |||| ||||||  |||||
seq2  AAAAAAAAAA-------------GAGAGAGAGAAGAGAAAAAG-GAAATG  936

seq1  CTTTCACAAGCATTCCACACATTTGACAGCTTGAGGGCAAAGAGCTTGGA  996
      ||||||||||||||||||||| |||||||||||||||| |||||||| ||
seq2  CTTTCACAAGCATTCCACACA-TTGACAGCTTGAGGGCCAAGAGCTT-GA  984

seq1  CAG-ATTTCTAAGGCTCCTATAGACGT-CTGTATTTTAACTCTATATGC-  1043
      ||| |||||||| ||| ||||| |||| ||||  |||| ||||| |||| 
seq2  CAGAATTTCTAA-GCTTCTATAAACGTCCTGTTATTTACCTCTAAATGCT  1033

seq1  TCATGATAGTATAAACCACTTTACCATCATCC-TTCTTCACATTTGTAAT  1092
      |||||| |  ||||  |||||   |||||||| |||||||||||||||||
seq2  TCATGA-ATGATAA--CACTT--ACATCATCCGTTCTTCACATTTGTAAT  1078

seq1  C  1093
      |
seq2  C  1079


seq1: chr4_18818914_18819976
seq2: B6Ng01-292O17.g_65_1128 (reverse)

seq1  CATTGTGA-CTTTTAGTGATTATTCGTCCAATGATAGCTACACTTCATTT  49
      |||||||| ||||||| |||||||||||| ||||||||||||||||||||
seq2  CATTGTGACCTTTTAGGGATTATTCGTCCCATGATAGCTACACTTCATTT  50

seq1  TTT-AAATAAAAATCTCAATTTTGCCTTTACAT-ACCCATTTCTGTTCAT  97
      ||| ||||||||||||||  ||||||||||||| ||||||||||||||||
seq2  TTTAAAATAAAAATCTCA--TTTGCCTTTACATAACCCATTTCTGTTCAT  98

seq1  T-GGTTCTTTTCTTAGTTCTCTTTTTAAATCTTTTAGTATGTCTTTGACA  146
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGGTTCTTTTCTTAGTTCTCTTTTTAAATCTTTTAGTATGTC-TTGACA  147

seq1  TGATACTAATTATAAAGCATTTGTTTTGATTTTATTCTTTTTATTATTCA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTAATTATAAAGCATTTGTTTTGATTTTATTCTTTTTATTATTCA  197

seq1  AGATCCCACTCAAAGGAAAAAATACCTTGGGTGGTAAGAGAGTAAAACCC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCACTCAAAGGAAAAAATACCTTGGGTGGTAAGAGAGTAAAACCC  247

seq1  TGGAAGAACTCTTCTTTGTGGTCATGTAGTCATCAGATGGAATATCTCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAACTCTTCTTTGTGGTCATGTAGTCATCAGATGGAATATCTCAT  297

seq1  AAGATGGGCAGGATGCCGGTAACTCCTCTAGATTTACAAAGAACACACAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGGCAGGATGCCGGTAACTCCTCTAGATTTACAAAGAACACACAG  347

seq1  GAGGATTTTTTGGGAGCTTGACACTGACACTAGTAGGGGTCCTGAATTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTTTTGGGAGCTTGACACTGACACTAGTAGGGGTCCTGAATTAA  397

seq1  ACTGTCCATTATTTTTCTGTCTCGAGCTGGAGGAATCAAGGACTAAATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCATTATTTTTCTGTCTCGAGCTGGAGGAATCAAGGACTAAATTT  447

seq1  TAACCCAGAAGTCAAGGGAGCCTTTGAATGAAATCTTCTAAGCCATGAGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAGAAGTCAAGGGAGCCTTTGAATGAAATCTTCTAAGCCATGAGG  497

seq1  TGTAAGGTTTGCCTAAACTAATGCAGCCACTTTCCTTCTTAAATACCTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGTTTGCCTAAACTAATGCAGCCACTTTCCTTCTTAAATACCTAT  547

seq1  TTGAATCATTAAGTTTTATAATAATATTTTAACTCCTTCTGTTCTTGTAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCATTAAGTTTTATAATAATATTTTAACTCCTTCTGTTCTTGTAC  597

seq1  CAAAGACAGTTACTACTTTTCCTTAGACTTCATTAGACTTCATTTCAGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACAGTTACTACTTTTCCTTAGACTTCATTAGACTTCATTTCAGCT  647

seq1  TCCTCCTCTCCCAGGAGAAAACTTCCCATCTCTAACATCTCATCAAACTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTCCCAGGAGAAAACTTCCCATCTCTAACATCTCATCAAACTT  697

seq1  TGTGTTAGTAACTTGACACTCTTCCAAAGCATTTAACATGTATGTGATCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTAGTAACTTGACACTCTTCCAAAGCATTTAACATGTATGTGATCA  747

seq1  AGTATAGACTCCTGCCTTAGTTACTTTTCTGTTGTTGGAAAAAAATTCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGACTCCTGCCTTAGTTACTTTTCTGTTGTTGGAAAAAAATTCTG  797

seq1  AAAATGGAAAATTAAGTTCAATGTAGTAGAACCCATAGTGAAATTACTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAAAATTAAGTTCAATGTAGTAGAACCCATAGTGAAATTACTGT  847

seq1  CAGTGTTGCAGAAGCTTGAGACACCCTGGTCACACTAGATTTACAACTGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTGCAGAAGCTTGAGACACCCTGGTCACACTAGATTTACAACTGG  897

seq1  GAATCAAAGGAGAGTTGTATTCATGTGCTCAGCTCATTTTTCTCCTGTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAAGGAGAGTTGTATTCATGTGCTCAGCTCATTTTTCTCCTGTTT  947

seq1  ATTTCAGGTTCCATCAGAAATAATGGGGCCAGTTACCATGAGAGTGCCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGTTCCATCAGAAATAATGGGGCCAGTTACCATGAGAGTGCCTT  997

seq1  TCTACCTCAATCTAGTAAAGATGATCCTTCAAAGGCAGGCTCAGAGATGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCAATCTAGTAAAGATGATCCTTCAAAGGCAGGCTCAGAGATGT  1047

seq1  GTCTGCCAGATGAATTC  1063
      |||||||||||||||||
seq2  GTCTGCCAGATGAATTC  1064


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