BAC Information

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BAC

Clone NameB6Ng01-293F20
Chromosome4 (Build37)
Map Location 42,899,872 - 43,045,220
singlet/doubletdoublet
Overlap geneN28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2
Upstream geneLOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635
Downstream geneB230312A22Rik, Unc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293F20.bB6Ng01-293F20.g
ACCGA089766GA089767
length320974
definitionB6Ng01-293F20.b B6Ng01-293F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,044,903 - 43,045,220)(42,899,872 - 42,900,839)
sequence
tggcaacaagctcaaacccatgagatcttaggctgggatgagctgagtct
tggaccatagtcttagtcctttttgtataaggtgctgggggctgggtggg
taaagtgaagctacagaggctaaactctgagaatctggattcttacactg
attctgtagtttagccccatcagaacctcagtgtctgtatatgtaaaatg
aaggaggaggaggagaatgagaagaaggagatgaggggggatacatgtct
cttaaagctttgtatttgagagagtgtcacaaacctgatttaaggttgat
gtgtttcaaacaaaaatgaa
gaattcagtgaatttggaattttactttgtgcttgtgtagaaaacgaggt
tgtggatgtctgcctgtgagtatattttttcggcatcacatgaacaggct
ctgcggagctgggtcttctgaacctgaccatatgcgtttctaggtataga
catctgtgtgggtgcatttctccagagatttttcggtctttgtgggtgtg
tgcacatgcagtcctgagaggatgacaagaaaagagaaaggggcttaagg
gacgagggaagggactgagcatttgttgaggggagcccctgctcagaagc
ccatggagccccacacattacacttcatgtcatcaataattgaaagagtc
taccatggtggcatgagcttaaaagcccctctgattggtagattcctggg
actcgccagccagccagccagccagccagccagccagccagcctaaccca
gataacaagttcctggccagtgaaaagccctgtctcaagtaaacgatatc
aaaatctaaaaaaggtggcgggcacctgagtgaggaacctacgtttgtcc
tctgagcatcatacgcatcacatgtataaacaaacatacacgtgcaccca
cactgtggacatgagctcacagagttctcaccaaataaatacataagtag
ctttcactagctagtcttcagctttgacctcttttaaaacatgcttacat
gatcaatgcattgtcaattcaaataagtaaatagtttggagtctaaagga
gatgaaagaattatcagacttctcatgtttcttctgtgaacactaaacat
acagttgcacaggggtctctaatctacagtcacgtgctaaggagagacag
attaagttcaaagcccaaagttaaaagtaatgatgccaaatctctaaaaa
attacccttaccttacaaaaataacgacacacagggattttttgttttgt
tttgggtttttgttgttgttgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_43044903_43045220
seq2: B6Ng01-293F20.b_51_370 (reverse)

seq1  TTCATTTTTGTCTGAAACACATCAACCTT-GCTCAGGTCTCTGACACTCT  49
      ||||||||||| |||||||||||||||||   |||||| | |||||||||
seq2  TTCATTTTTGTTTGAAACACATCAACCTTAAATCAGGTTTGTGACACTCT  50

seq1  CTCAAATAC-AAGCTTTAAGAGGCCTGTATCCCCCCTCATCTCCTTCTTC  98
      ||||||||| |||||||||||| | |||||||||||||||||||||||||
seq2  CTCAAATACAAAGCTTTAAGAGACATGTATCCCCCCTCATCTCCTTCTTC  100

seq1  TCATTCTCCTCCTCCTCCTTCATTTTACATATACAGACACTGAGGTTCTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTCCTCCTCCTCCTTCATTTTACATATACAGACACTGAGGTTCTG  150

seq1  ATGGGGCTAAACTACAGAATCAGTGTAAGAATCCAGATTCTCAGAGTTTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCTAAACTACAGAATCAGTGTAAGAATCCAGATTCTCAGAGTTTA  200

seq1  GCCTCTGTAGCTTCACTTTACCCACCCAGCCCCCAGCACCTTATACAAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTAGCTTCACTTTACCCACCCAGCCCCCAGCACCTTATACAAAA  250

seq1  AGGACTAAGACTATGGTCCAAGACTCAGCTCATCCCAGCCTAAGATCTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAAGACTATGGTCCAAGACTCAGCTCATCCCAGCCTAAGATCTCA  300

seq1  TGGGTTTGAGCTTGTTGCCA  318
      ||||||||||||||||||||
seq2  TGGGTTTGAGCTTGTTGCCA  320

seq1: chr4_42899872_42900839
seq2: B6Ng01-293F20.g_67_1040

seq1  GAATTCAGTGAATTTGGAATTTTACTTTGTGCTTGTGTAGAAAACGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAATTTGGAATTTTACTTTGTGCTTGTGTAGAAAACGAGGT  50

seq1  TGTGGATGTCTGCCTGTGAGTATATTTTTTCGGCATCACATGAACAGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATGTCTGCCTGTGAGTATATTTTTTCGGCATCACATGAACAGGCT  100

seq1  CTGCGGAGCTGGGTCTTCTGAACCTGACCATATGCGTTTCTAGGTATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGAGCTGGGTCTTCTGAACCTGACCATATGCGTTTCTAGGTATAGA  150

seq1  CATCTGTGTGGGTGCATTTCTCCAGAGATTTTTCGGTCTTTGTGGGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGTGGGTGCATTTCTCCAGAGATTTTTCGGTCTTTGTGGGTGTG  200

seq1  TGCACATGCAGTCCTGAGAGGATGACAAGAAAAGAGAAAGGGGCTTAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGCAGTCCTGAGAGGATGACAAGAAAAGAGAAAGGGGCTTAAGG  250

seq1  GACGAGGGAAGGGACTGAGCATTTGTTGAGGGGAGCCCCTGCTCAGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAGGGAAGGGACTGAGCATTTGTTGAGGGGAGCCCCTGCTCAGAAGC  300

seq1  CCATGGAGCCCCACACATTACACTTCATGTCATCAATAATTGAAAGAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGCCCCACACATTACACTTCATGTCATCAATAATTGAAAGAGTC  350

seq1  TACCATGGTGGCATGAGCTTAAAAGCCCCTCTGATTGGTAGATTCCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGGTGGCATGAGCTTAAAAGCCCCTCTGATTGGTAGATTCCTGGG  400

seq1  ACTCGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCTAACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCTAACCCA  450

seq1  GATAACAAGTTCCTGGCCAGTGAAAAGCCCTGTCTCAAGTAAACGATATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAAGTTCCTGGCCAGTGAAAAGCCCTGTCTCAAGTAAACGATATC  500

seq1  AAAATCTAAAAAAGGTGGCGGGCACCTGAGTGAGGAACCTACGTTTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTAAAAAAGGTGGCGGGCACCTGAGTGAGGAACCTACGTTTGTCC  550

seq1  TCTGAGCATCATACGCATCACATGTATAAACAAACATACACGTGCACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCATCATACGCATCACATGTATAAACAAACATACACGTGCACCCA  600

seq1  CACTGTGGACATGAGCTCACAGAGTTCTCACCAAATAAATACATAAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGACATGAGCTCACAGAGTTCTCACCAAATAAATACATAAGTAG  650

seq1  CTTTCACTAGCTAGTCTTCAGCTTTGACCTCTTTTAAAACATGCTTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTAGCTAGTCTTCAGCTTTGACCTCTTTTAAAACATGCTTACAT  700

seq1  GATCAATGCATTGTCAATTCAAATAAGTAAATAGTTTGGAGTCTAAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATGCATTGTCAATTCAAATAAGTAAATAGTTTGGAGTCTAAAGGA  750

seq1  GATGAAAGAATTATCAGACTTCTCATGTTTCTTCTGTGAACACTAAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAGAATTATCAGACTTCTCATGTTTCTTCTGTGAACACTAAACAT  800

seq1  ACAGTTGCACAGGGGTCTCTAATCTACAGTCACGTGCTAAGGAGAGACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGCACAGGGGTCTCTAATCTACAGTCACGTGCTAAGGAGAGACAG  850

seq1  ATTAAGTTCAAAG-CCAAAGTTAAAAGT-ATGATGCCAAATCTCTAAAAA  898
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  ATTAAGTTCAAAGCCCAAAGTTAAAAGTAATGATGCCAAATCTCTAAAAA  900

seq1  ATTA-CCTTACCTTACAAAAATAACGACACACAGG--ATTTTTGTTTTGT  945
      |||| ||||||||||||||||||||||||||||||   ||||||||||||
seq2  ATTACCCTTACCTTACAAAAATAACGACACACAGGGATTTTTTGTTTTGT  950

seq1  TTT-GGTTTTTGTTGTTGTTGTGG  968
      ||| ||||||||||||||||||||
seq2  TTTGGGTTTTTGTTGTTGTTGTGG  974