BAC Information

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BAC

Clone NameB6Ng01-293K12
Chromosome4 (Build37)
Map Location 146,958,134 - 146,994,241
singlet/doubletdoublet
Overlap geneOTTMUSG00000010673, 2610305D13Rik
Upstream geneOTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718
Downstream geneLOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293K12.bB6Ng01-293K12.g
ACCGA089984GA089985
length1,1511,202
definitionB6Ng01-293K12.b B6Ng01-293K12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,993,085 - 146,994,241)(146,958,134 - 146,959,306)
sequence
gaattccaggatagccagggctatacagagaaaccttgtctccaaaacaa
caacaacaacaacaacaaaaacaaaaagcaagtgatagtaaattaactgg
aaggctaaaaagtgcagagttatgcctattcagaaaaaggtgtgtattgg
aggaaatgtcagtttcaagttttaaagtagaagctgtattttttctggtg
acttcatggaggaagcatgtaaaaccatgggtgcactggtagacatacac
tgtcagacagacagtttggtatttcagaacacaggataagcatgtaggga
gagcgatcgactccttacgtctagcagacaagagaggtcttttattagtt
tttatgttacagcagcatatccaagacctttttagacactaaggggtctt
ctgatatctcagattattctttaggaatgtataaaaccaagtgatatttt
cttgtattttcagtagcttattaagtgtattatcagattggagtgttctc
tttaaatatttgtagttcttgagttgaagaattatattccttgtaatttg
agaaaatgtaccttctctgtatccttatttgacacattgaaaatattcca
ggtcttatttgctctttgtaagcactactgtactgtgaaaaggtattgtg
gtggctttgcacatccttgtctctctttagaaaaaaggagtagaatgatg
acagctgtctttatcttttgtagtgagaggtgtaggatgttggctattat
cttccttagactgaggaatattccttttgttctcaaaatacccagagctt
tcacagtgatcccctgtgatatttttccctaggctttttgtaactatatc
atggttatgagccctctctcactgtacatacattgtgctgtgacttgttt
tgtttgtgcctgttgaaatagtcttgcatctctggcatgaaattaagtag
agtttcctttctgcatccacagaaaaagtctttgtttaatgtactttggt
gcacttgttacttttttcattgtacatattttatggtcattttttgggaa
tacaaataaagtcatttttttgtgaggaggtctacaacataccccttttt
tccgttttctgcatataactttatgcaaattatttggggttttctaagca
a
gaattcatcagagaatgcatacaggagagaaaccttacaagtgtagtgaa
tgtgacaaatgctttacccaaaaatcccatcttaatattcatcagggaat
tcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgcttta
cccacaaatcccatcttattaatcatcagaaaattcatacaggagagaaa
ccttacaaatagtttacatgtgacaaatacaatactcacaatgtcagtct
gagaaatcatgaattttttcatacagtagagaatatttataaatgaagtg
aacgagacaatcctttaccaagatatatcatcttaaaattcattagagaa
tagttagagaagacaaacttttcaaatatattgtaggtatgaatcctttt
tttttttttttttttggcctatttcctagactgtaacagtgaatacttac
aggctagaaacttaactcatgcattgtatgaagaaatatctttgacttca
cttcaggatagagagaacatctaagaactttttagggtaaagtatttctg
ttggggaaaatgtggcatatgttttattcatggtgtcctggcaacacttg
aggctccacactagagaattagtgtgattatgaaaatcttgtcaaaacat
tcatgcaatgttcaaatcttagataatgttaactatttatgctgtgagaa
actctgaaaatgtgaaaatgtagaaagcttttcatgacacctttttactt
gttcaccctcaaatgttaccagatgaagacaagttgggaagtcagaagat
agtattgtgtaacactttcattgaggactgaaataatccatttcaaagga
aaactattttaaagtctttaatgcaatcctcaaaataatctaataaaaac
cgataacatttctgtatatttaattttaaatgattccaattaagaaaagt
tattacttaaaaaaagaagtacctggcaaactggagccacccagacaagc
aatattctttaatccctataaataatgcttacagaatggtgaagtgtggc
tttcgaagtatctactaatcagaattcttctcaattgcttgtttgttcaa
ttataggataaacaaaatgacttctgagtttcttgtggaatctgatcaaa
cacttcttctattgtctgtacttactccaataagcctgaaaggattccaa
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146993085_146994241
seq2: B6Ng01-293K12.b_46_1196 (reverse)

seq1  TTGCTTTAGAAAACACCAAAATAATATTGCATAAAGTATAT-TGCAGAAA  49
      |||| ||||||||| || ||||||| ||||||||||| ||| ||||||||
seq2  TTGC-TTAGAAAAC-CCCAAATAAT-TTGCATAAAGT-TATATGCAGAAA  46

seq1  ACAGAAAAAGGGGGTATGTTGTAGACTCCTCCCCCCCAAAAAAATTGGCT  99
      || |||||| |||||||||||||||  ||||| | |  |||||| || ||
seq2  ACGGAAAAAAGGGGTATGTTGTAGA--CCTCCTCAC--AAAAAAATGACT  92

seq1  TTATTTGGATCCCCCAAAAATGACCATAAAATATGTACAATGAAAAAAGT  149
      ||||||| || ||| |||||||||||||||||||||||||||||||||||
seq2  TTATTTGTATTCCCAAAAAATGACCATAAAATATGTACAATGAAAAAAGT  142

seq1  AACAAAGTGCACCAAAGTACATTAAACAAACACCTTTTTCTGTGGATGCA  199
      ||| |||||||||||||||||||||||||| | |||||||||||||||||
seq2  AAC-AAGTGCACCAAAGTACATTAAACAAAGA-CTTTTTCTGTGGATGCA  190

seq1  GAAAGGAAACTCTACTTAATTTCATGCCAGAGATGCAAGACTATTTCAAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAAAGGAAACTCTACTTAATTTCATGCCAGAGATGCAAGACTATTTCAAC  240

seq1  AGGCACAAACAAAACAAGTCACAGCACAATGTATGTACAGTGAGAGAAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||| | 
seq2  AGGCACAAACAAAACAAGTCACAGCACAATGTATGTACAGTGAGAGAGGG  290

seq1  CTCATAACCATGACGATATAGTTACAAAAAGCCTGGGGAAAAATATCACA  349
      |||||||||||   |||||||||||||||||||| |||||||||||||||
seq2  CTCATAACCAT---GATATAGTTACAAAAAGCCTAGGGAAAAATATCACA  337

seq1  GGGGATCACTGTGAAAGCTCTGGATATTTTGAGAACAACAGGAATATTCC  399
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  GGGGATCACTGTGAAAGCTCTGGGTATTTTGAGAACAAAAGGAATATTCC  387

seq1  TCAGTCTAAGGAAGATAATAGCCAACATCCTACACCTCTCACTACAAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTAAGGAAGATAATAGCCAACATCCTACACCTCTCACTACAAAAG  437

seq1  ATAAAGACAACTGTCATCATTCTACTCCTTTTTTCTAAAGAAAGACAAGG  499
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  ATAAAGACAGCTGTCATCATTCTACTCCTTTTTTCTAAAGAGAGACAAGG  487

seq1  ATGTGCAAAGCCACCACAATACCTTTTCACAGTGCAGTAGTGCATACAAA  549
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  ATGTGCAAAGCCACCACAATACCTTTTCACAGTACAGTAGTGCTTACAAA  537

seq1  GAGCAAATAAGACCTGGAATATTTTCAATGTGCCAAATGAGGATACAGAG  599
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  GAGCAAATAAGACCTGGAATATTTTCAATGTGTCAAATAAGGATACAGAG  587

seq1  AAGGTATGTTTTCTCAAATTACAAGGAACATATTTCTTCAACTCAAGAAC  649
      ||||||  |||||||||||||||||||| ||| |||||||||||||||||
seq2  AAGGTACATTTTCTCAAATTACAAGGAATATAATTCTTCAACTCAAGAAC  637

seq1  TACAAATATTTAAAGAGAACACTCCAATCTGATAATACACCTAATAAGCT  699
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TACAAATATTTAAAGAGAACACTCCAATCTGATAATACACTTAATAAGCT  687

seq1  ACTGAAAATACAAGAAAATATCACTTGGTTTTATACATTCCTAAAGAATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAATACAAGAAAATATCACTTGGTTTTATACATTCCTAAAGAATA  737

seq1  ATCTGAGATATCAGAAGACCCCTTAGTGTCTAAAAAGGTCTTGGATATGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGATATCAGAAGACCCCTTAGTGTCTAAAAAGGTCTTGGATATGC  787

seq1  TGCTGTAACATAAAAACTAATAAAAGACCTCTCTTGTCTGCTAGACGTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTAACATAAAAACTAATAAAAGACCTCTCTTGTCTGCTAGACGTAA  837

seq1  GGAGTGGATCGCTCTCCCTACATGCTTATTCTGTGTTCTGAAATACCAAA  899
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAGTCGATCGCTCTCCCTACATGCTTATCCTGTGTTCTGAAATACCAAA  887

seq1  CTGTCTGTCTGACAGTGTATGTCTACCAGTGCACCCATGGTTTTACATGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCTGACAGTGTATGTCTACCAGTGCACCCATGGTTTTACATGC  937

seq1  TGCCTCCATGAAGTCACCAGAAAAAATACAGCTTCTACTTTAAAACTTGA  999
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCATGAAGTCACCAGAAAAAATACAGCTTCTACTTTAAAACTTGA  987

seq1  AACTGACATTTCCTCCAATACACACCTTTTTCTGAATAGGCATAAGTCTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACTGACATTTCCTCCAATACACACCTTTTTCTGAATAGGCATAACTCTG  1037

seq1  CACTTTTTAGCCTTCCAGTTAATTTACTATCACTTGCTTTTTGTTT----  1095
      ||||||||||||||||||||||||||||||||||||||||||||||    
seq2  CACTTTTTAGCCTTCCAGTTAATTTACTATCACTTGCTTTTTGTTTTTGT  1087

seq1  --TTGTTGTTGTTGTTGTTTTGGAGACAAGGTTTCTCTGTATAGCCCTGG  1143
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGTTGTTGTTTTGGAGACAAGGTTTCTCTGTATAGCCCTGG  1137

seq1  CTATCCTGGAATTC  1157
      ||||||||||||||
seq2  CTATCCTGGAATTC  1151

seq1: chr4_146958134_146959306
seq2: B6Ng01-293K12.g_68_1269

seq1  GAATTCATCAGAGAATGCATACAGGAGAGAAACCTTACAAGTGTAGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGAGAATGCATACAGGAGAGAAACCTTACAAGTGTAGTGAA  50

seq1  TGTGACAAATGCTTTACCCAAAAATCCCATCTTAATATTCATCAGGGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAAATGCTTTACCCAAAAATCCCATCTTAATATTCATCAGGGAAT  100

seq1  TCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTA  150

seq1  CCCACAAATCCCATCTTATTAATCATCAGAAAATTCATACAGGAGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAATCCCATCTTATTAATCATCAGAAAATTCATACAGGAGAGAAA  200

seq1  CCTTACAAATAGTTTACATGTGACAAATACAATACTCACAATGTCAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAAATAGTTTACATGTGACAAATACAATACTCACAATGTCAGTCT  250

seq1  GAGAAATCATGAATTTTTTCATACAGTAGAGAATATTTATAAATGAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATCATGAATTTTTTCATACAGTAGAGAATATTTATAAATGAAGTG  300

seq1  AACGAGACAATCCTTTACCAAGATATATCATCTTAAAATTCATTAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGACAATCCTTTACCAAGATATATCATCTTAAAATTCATTAGAGAA  350

seq1  TAGTTAGAGAAGACAAACTTTTCAAATATATTGTAGGTATGAATCC---T  397
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  TAGTTAGAGAAGACAAACTTTTCAAATATATTGTAGGTATGAATCCTTTT  400

seq1  TTTTTTTTTTTTTTTGGCCTATTTCCTAGACTGTAACAGTGAATACTTAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTGGCCTATTTCCTAGACTGTAACAGTGAATACTTAC  450

seq1  AGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCTTTGACTTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCTTTGACTTCA  500

seq1  CTTCAGGATAGAGAGAACATCTAAGAACTTTTTAGGGTAAAGTATTTCTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGATAGAGAGAACATCTAAGAACTTTTTAGGGTAAAGTATTTCTG  550

seq1  TTGGGGAAAATGTGGCATATGTTTTATTCATGGTGTCCTGGCAACACTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAAATGTGGCATATGTTTTATTCATGGTGTCCTGGCAACACTTG  600

seq1  AGGCTCCACACTAGAGAATTAGTGTGATTATGAAAATCTTGTCAAAACAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCACACTAGAGAATTAGTGTGATTATGAAAATCTTGTCAAAACAT  650

seq1  TCATGCAATGTTCAAATCTTAGATAATGTTAACTATTTATGCTGTGAGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAATGTTCAAATCTTAGATAATGTTAACTATTTATGCTGTGAGAA  700

seq1  ACTCTGAAAATGTGAAAATGTAGAAAGCTTTTCATGACACCTTTTTACTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAAATGTGAAAATGTAGAAAGCTTTTCATGACACCTTTTTACTT  750

seq1  GTTCACCCTCAAATGTTACCAGATGAAGACAAGTTGGGAAGTCAGAAGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACCCTCAAATGTTACCAGATGAAGACAAGTTGGGAAGTCAGAAGAT  800

seq1  AGTATTGTGTAACACTTTCATTGA-GACTGAAATAATCCATTTCAAAGGA  846
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTATTGTGTAACACTTTCATTGAGGACTGAAATAATCCATTTCAAAGGA  850

seq1  AAACTA-TTTAAGGTCTTTAATGCAATCCTCAAAAT-ATCTAAT-AAAAC  893
      |||||| ||||| ||||||||||||||||||||||| ||||||| |||||
seq2  AAACTATTTTAAAGTCTTTAATGCAATCCTCAAAATAATCTAATAAAAAC  900

seq1  TGATAACA-TTCTGTATATTTAA-TTTAAATGA-TCCAATTAAGAAAAGT  940
       ||||||| |||||||||||||| ||||||||| ||||||||||||||||
seq2  CGATAACATTTCTGTATATTTAATTTTAAATGATTCCAATTAAGAAAAGT  950

seq1  TA-TACTTAAAAAA--GAGTACCTGGCAAACT-GAGCCACCCAGAC-AGC  985
      || |||||||||||   ||||||||||||||| ||||||||||||| |||
seq2  TATTACTTAAAAAAAGAAGTACCTGGCAAACTGGAGCCACCCAGACAAGC  1000

seq1  -ATATTCTTTA--TCCTATAAAT-ATGCTTACAGA--TGTGAAGTGTG--  1027
       ||||||||||   ||||||||| |||||||||||   ||||||||||  
seq2  AATATTCTTTAATCCCTATAAATAATGCTTACAGAATGGTGAAGTGTGGC  1050

seq1  CTTCG-AGTATCTACTAATCAGAATTCTTCTCAAATGCTTGTTTGT--CA  1074
       |||| |||||||||||||||||||||||||||| |||||||||||   |
seq2  TTTCGAAGTATCTACTAATCAGAATTCTTCTCAATTGCTTGTTTGTTCAA  1100

seq1  TTATAGGATAA--CAAATGAC-TCTGAGTTTCTTGTG--ATCTGGTCAAC  1119
      |||||||||||   ||||||| |||||||||||||||  ||||| |||| 
seq2  TTATAGGATAAACAAAATGACTTCTGAGTTTCTTGTGGAATCTGATCAAA  1150

seq1  AACTCCTTTCCTATTGTCCTGTAACTAACTCCAATAAAGCTGAAA-GATT  1168
       ||| |||  ||||||| |||| ||| ||||||||||  |||||| ||||
seq2  CACTTCTT--CTATTGT-CTGT-ACTTACTCCAATAAGCCTGAAAGGATT  1196

seq1  -CAACA  1173
       |||||
seq2  CCAACA  1202