BAC Information

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BAC

Clone NameB6Ng01-293M06
Chromosome4 (Build37)
Map Location 146,676,232 - 146,677,355
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574
Downstream geneLOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293M06.bB6Ng01-293M06.g
ACCGA090066GA090067
length1,2311,099
definitionB6Ng01-293M06.b B6Ng01-293M06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctgatgccttctcagactgtttttctcagtaaaacatttgtca
cattcactacatttgtaaggtttctctcctgcatgaattctatgatgaac
tctcagagagcctttgtgagtaaagcatttgtcacattcactacatttgt
aaggtttctctcctgcatgaattctatgatgaactctcagatagcctttg
tcagtaaagcatttgtcgcattcactacatttgtaaggtttctctcctgc
atgaattctatgatgaactctaagactgcctttgtcagtaaagcatttgt
cacactcactgcattggtacggtttctctcctgtatgaattctctgatga
actctcagactgcttttgtcagtaaagcatttgtcgcattcactacattt
gtaaggtttctctcctgaatgaattctacgatgaatactaagatgggatg
gttgggtaaagcatttgtcacactcactgcatttgtacggtttctctcct
atatgaattctctgatgaactctgagactgcctttgtcagtaaagcattt
gtcgcattcactacatttgtaaggtttctctcctgaatgaattctacgat
gaatactaagaggggatggttgggtaaagcatttgtcgcattcactacat
ttgtaaggtttctctcctgaatgaattctacgatgaatactaagatggga
tggttgggtaaagcatttgtcacactcactgcatttgtaaggtttctctc
ctgtatgaattctctgatgaactctcagactgcctttgtcagtaaagcat
ttgtcacactcattacatttgtaaggtttctctcctgtatgaattctctg
atgctttctcagagtgaatttgtcagtaaagcatttgtcgcattcactac
atttgtaggtttctctcctgtatgaattctctgatgcttttttcagagtg
catttgtcaggaaagcattgtcgcattcactacatttgtaggtttctttc
ctgatgaattctacgatgaatactaagatgggatggttgggtaaagcatt
ttgttcacaactcactgcatttgtaggtttttctctccttgtatgattct
ctgatgaacttctcagactgccttgtctcagtagcatttgtccaatcaat
tacattggaggttcttctgtatggattcctgaatgctttctcgagagtgt
catttgtcagattgaagagcgacaccgtagg
gaattctggagatgtctcacacctgatcgcttgtaagaaaaaacgctaac
atccaattcctgggacaagaattggagggtagaatttcttgatggaaaaa
gtgatgtagggaatagaaagcaggtggaagtgatttatgagagacagaga
agagaacagataaatgggaacaggggcagagagctaaagagcaagttaca
cataaagtcataggcttgaatagtctgaaatttgaatgatcattggtaga
ctgctccaatgaaaggcctatgctttaaattatatagaaacctccttctc
ataatttataacactggtgtatccaccagtactcacactacactcatgta
catatgcaatgtgcatatatatatatatatatatatatatatatatacat
atatacatatgtatatatatacacacatatatatacatatgtatatatgt
gtgtgtatatatgtacatatataaatgcatatatatacatatatatataa
aacttttcacaagggtgctttgggtatttaagtcaaattagatattgatt
ggttattcacaataaattcatgacatcattgacttagcatattttggagg
aaggacaaattttagatcaatgtctttttggttggttctatatatacatt
tcactttttgtagatagcaaagcccttcccataaccagtactctggaaca
taaaagccaatgtgcttggaggcacatgcttgacctcttcacacatagtg
agttgtgtaagtctgctccttagcaatgaagacttattgtcagtttgtaa
aaagcaacacctttgttgtcaataccatgcagtgtttgcttatttttatg
aaaccactttgtagaacaactcagttgataaaacccaatggaaaagacaa
gatcaactgggactccatctctgtcagatttcagagacttcattagaatc
accttcatacatttataagctgggttcttaaaaaaaaaaattcccaaata
tcgtactagataacagccagccgagtcatgagtctgtacatggtgctttt
cctacgcaatgccaggaccacagtgtggccatgcaaggtaccaaagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146676232_146677355
seq2: B6Ng01-293M06.g_67_1165

seq1  GAATTCTGGAGATGTCTCACACCTGATCGCTTGTAAGAAAAAATGCTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAATTCTGGAGATGTCTCACACCTGATCGCTTGTAAGAAAAAACGCTAAC  50

seq1  ATCCAATTCCTGGGACAAGAATTGGAGGGTAGAATTTCTTGATGGAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATTCCTGGGACAAGAATTGGAGGGTAGAATTTCTTGATGGAAAAA  100

seq1  GTGATGTAGGGAATAGAAAGCAGGTGGAAGTGATTTATGAGAGACAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTAGGGAATAGAAAGCAGGTGGAAGTGATTTATGAGAGACAGAGA  150

seq1  AGAGAACAGATAAATGGGAACAGGGGCAGAGAGGTAAAGAGCAAGATACG  200
      ||||||||||||||||||||||||||||||||| ||||||||||| ||| 
seq2  AGAGAACAGATAAATGGGAACAGGGGCAGAGAGCTAAAGAGCAAGTTACA  200

seq1  CATAAAGTCATAGGCTTGAATAGTCTGAAATTTGAATGATCATTGGTAAA  250
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATAAAGTCATAGGCTTGAATAGTCTGAAATTTGAATGATCATTGGTAGA  250

seq1  CTGCTCCAATGAAAGGCCTATGCTTTAAATTATATAGAAACCTCCTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCAATGAAAGGCCTATGCTTTAAATTATATAGAAACCTCCTTCTC  300

seq1  ATAATTTATAACACTGGTGTATCCACCAGTACTCACACTACACTCATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTATAACACTGGTGTATCCACCAGTACTCACACTACACTCATGTA  350

seq1  CATATGCAATGTGCATATATATATATATATATATATATATATATATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CATATGCAATGTGCATATATATATATATATATATATATATATATATACAT  400

seq1  ATATATACACATATGTATATATACACACATATATATACATATGTATATAT  450
      ||||    ||||||||||||||| |||||               ||||||
seq2  ATAT----ACATATGTATATATATACACA--------------CATATAT  432

seq1  ATACATATGTATATATGTGTGTGTATATATGTATATATATAAATGCATAT  500
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATACATATGTATATATGTGTGTGTATATATGTACATATATAAATGCATAT  482

seq1  ATATACATATATATATATATAAAACTTTTCACAAGGGTGCTTTGGGTATT  550
      ||||||    ||||||||||||||||||||||||||||||||||||||||
seq2  ATATAC----ATATATATATAAAACTTTTCACAAGGGTGCTTTGGGTATT  528

seq1  TAAGTCAAATTAGATATTGATTGGTTATTCACAATAAATTCATGACATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAAATTAGATATTGATTGGTTATTCACAATAAATTCATGACATCA  578

seq1  TTGACTTAGCATATTTTGGAGGAAGGACAAATTTTAGATCAATGTCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTAGCATATTTTGGAGGAAGGACAAATTTTAGATCAATGTCTTTT  628

seq1  TGGTTGGTTCTATATATACATTTCACTTTTTGTAGATAGCAAAGCCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTTCTATATATACATTTCACTTTTTGTAGATAGCAAAGCCCTTC  678

seq1  CCATAACCAGTACTCTGGAACATAAAAGCCAATGTGCTTGGAGGCACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCATAACCAGTACTCTGGAACATAAAAGCCAATGTGCTTGGAGGCACATG  728

seq1  CTTGACCTCTTCACACATAGTGAGTTGTGTAAGTCTGCTCCTTAGCAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCTCTTCACACATAGTGAGTTGTGTAAGTCTGCTCCTTAGCAATG  778

seq1  AAGACTTATTGTCAGTTTGTAAAAAGCAACACCTTTGTTGTCAATGCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGACTTATTGTCAGTTTGTAAAAAGCAACACCTTTGTTGTCAATACCAT  828

seq1  GCAGTGTTTGCTTATTTTTATGAAACCATTTTGTAGAACAGCTCAGTTGA  900
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  GCAGTGTTTGCTTATTTTTATGAAACCACTTTGTAGAACAACTCAGTTGA  878

seq1  TAAAACCCAATGGAAAAGACAAGATCAACTGGAACTCCATCTCTGTCAGA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAAAACCCAATGGAAAAGACAAGATCAACTGGGACTCCATCTCTGTCAGA  928

seq1  ATTCAGAGACTTCATTAGAATCACCTTCATACACTTATAAGCT-GGTTCT  999
       |||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  TTTCAGAGACTTCATTAGAATCACCTTCATACATTTATAAGCTGGGTTCT  978

seq1  TTAAAAAAAAA--TTCCAAATATCGTACTAAGAATACAGCCAGCCGAAGT  1047
      | |||||||||  | |||||||||||||| |||  ||||||||||| |||
seq2  TAAAAAAAAAAATTCCCAAATATCGTACT-AGATAACAGCCAGCCG-AGT  1026

seq1  CCATGGAGTCTTGTACCATGGTGCTTTT-CTACGCATTGGCAGGACCACA  1096
       ||| ||||| |||| |||||||||||| ||||||| || ||||||||| 
seq2  -CAT-GAGTC-TGTA-CATGGTGCTTTTCCTACGCAATGCCAGGACCAC-  1071

seq1  AGTGTGGCAATGCAGTGTACAAAAGTTC  1124
      |||||||| |||||  |||| |||||||
seq2  AGTGTGGCCATGCAAGGTACCAAAGTTC  1099