BAC Information

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BAC

Clone NameB6Ng01-294E21
Chromosome4 (Build37)
Map Location 28,932,390 - 29,067,498
singlet/doubletdoublet
Overlap geneLOC100040907
Upstream geneLOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773, Epha7
Downstream geneLOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294E21.bB6Ng01-294E21.g
ACCGA090467GA090468
length1,2111,157
definitionB6Ng01-294E21.b B6Ng01-294E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,066,281 - 29,067,498)(28,932,390 - 28,933,555)
sequence
gaattcaagggctctttaaaatacgtcgtgcctccctcacctctataatc
acctacttcagctctgtacggtaatacaaaaataattgttgccacacatg
tgtagcatcacagaagcaagtgggatgtatacatttttttcaaaactcat
tgctgggagagcacagagaagctaatgcaatgttttaaaattaggaagaa
tatgctaaggcaaacggtcaacagagtataggatacgttaatgccagaaa
agactgtctgtgaagacagcatgtttccaaatggtatgtgatctcaattg
gtagtaggactggctggaagaactactcatacagcagacttgaggtccag
acatgagagatcagcctaaaacatatatgaagaaaaagcaagtagagtag
actcaaatcatgtttggatttaagagaacatagaagagaaattcctgaaa
tataaaacatacctactttcctgataaaagtcactgttccagcccctcct
gttgacgatgctgagttaagtgactgagagaataagaacagtattatttt
cttagatttgaaagttctcggtgtttataggtatgacagatggctttttg
caaggatacaatggttatgggagcaagaaacaggactcatgtgaagtctc
ctggttttgatacacttcttgatgactggctcacccagtagccatgtatg
attgtggtcctctattttgaaaaagagagctgagttttatgttttatttc
tggaatcttttaatttgaaataggttagcacgtaaagttataaaaataat
attgtaaataattgtttacaaaaactcttcagtaatgatttaactctact
aaacatcagtcataaccgagttaatattataaaaagcattgtattctcta
aaacataaatatagatttttatagcctttactttgctttcaatgcctggt
tttaattttctatagaagagaccaaggttcagtctttgctaaagtctatt
ctacaaatctatttcccactaaactactcatatttcaagtattttctcca
gaaatgctaacgattattatttcgtgaaagtgtaaatgttgggctcggaa
tttcctaggaattgcctaagaatgctggaacacatgttatagagagtctt
ggccctagataacagtccaatgtcattcgggctattgcctgtgggggact
caagggaggat

gaattcaatcactccttgtaattgtatttcctggtcactattaagaaggt
gacttaggaggaaaattgctagcacatatttgtggtaaagcctaaaatcc
tttcttctagagtcctgtcaaaactttcacttcacagaagcccaaaactc
tctttctgtccattctacactctatctccaatcgatggcattcagttctc
agatgtcagaacccacttttaatctcaattggacacttttaatatttaca
atcttatatttatgaataagacttccatgtgaagagcacactctacttca
gaagcatcatcatctctaatttctcccacacacgatgaaacattaggaaa
acatagagatctctcagtcaaacaacccaaattgagtctttccttgactt
gatgtgatctatgtgttctagatgaaggtgatatttgaaaagtacctatg
ataaaatagcacacaggtttattttttttatgtcatagtttagccatatg
cgtgcacttctaaagaaactttatgtgcttattttattttattttatttt
attttatttttgatgtgtgttttgccatctttttaccacatttgtaccta
ttacctgtagaggccagaaatgacactggattcactagaactgaagttac
agatggttgggagctgatatgtaggtgctgggaattgaacccaggtcctt
tggaagagaagccagtgctcttagctgctgagccatgtctctagtcctag
agaaaaattaagaatcatcagttgccaaggaaggtcaaaaatgatagtac
taagctggtgtctacagaggttactgttgcctttctgtatgctctttatt
ttctcgattcaggagtttagaaataatttcattaagtggtgttgtaacct
gttatagaaacaaaacacaacttagagcttaagtgtatgctatgataatg
tttacacagataaataacatttctatgtgtttatgtatactattttagca
tatttgatagcaccaagagggtgaaagaatttttcaaatattttgtcttt
taaatcagttattaggaatcatcctatgagcccttaacacccaacaggca
ggtgctattacctgggtttgattctcacagtagttactttgcacttataa
ttaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_29066281_29067498
seq2: B6Ng01-294E21.b_47_1257 (reverse)

seq1  ATCCTCCTTTGA--TCCCCACAGGGCAATTAGCCCGAATGACATTGGACT  48
      ||||||| ||||   ||||||| ||||| |||||||||||||||||||||
seq2  ATCCTCCCTTGAGTCCCCCACA-GGCAA-TAGCCCGAATGACATTGGACT  48

seq1  TGTTTATC-AGGGCAAAGA--CTCTATAACATGTGGTTCCAGCAATTCTT  95
         ||||| ||||| ||||  ||||||||||||| |||||||| ||||||
seq2  --GTTATCTAGGGCCAAGACTCTCTATAACATGT-GTTCCAGC-ATTCTT  94

seq1  AGCAAATATCCCCTAGGAAATTCGAAGCCAAACATTTACAACTTTCACCA  145
      ||  |||    ||||||||||||  |||| ||||||||| |||||||| |
seq2  AGGCAAT---TCCTAGGAAATTCCGAGCCCAACATTTAC-ACTTTCACGA  140

seq1  AATTAATAATCGTTAGCATTTCT-GAG-AAATACTTTGAAATATGGAGTA  193
      || |||||||||||||||||||| ||| |||||| ||||||||| |||||
seq2  AA-TAATAATCGTTAGCATTTCTGGAGAAAATAC-TTGAAATAT-GAGTA  187

seq1  GTTTAGTGTGAAATAGATTTGTAGGAATAGACTTTAGCAAAGACTGAACC  243
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  GTTTAGTGGGAAATAGATTTGTA-GAATAGACTTTAGCAAAGACTGAACC  236

seq1  TTGGTCTCTTCTATAGAAAATTAAAACCAGGCATTGAAAGCAAAGTAAAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTCTTCTATAGAAAATTAAAACCAGGCATTGAAAGCAAAGTAAAG  286

seq1  GCTATAAAAATCTATATTTATGTTTTAGAGAATACAATGCTTTTTATAAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAAAAATCTATATTTATGTTTTAGAGAATACAATGCTTTTTATAAT  336

seq1  ATTAACTCGGTTATGACTGATGTTTAGTAGAGTTAAATCATTACTGAAGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCGGTTATGACTGATGTTTAGTAGAGTTAAATCATTACTGAAGA  386

seq1  GTTTTTGTAAACAATTATTTACAATATTATTTTTATAACTTTACCTGCTA  443
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTTTTTGTAAACAATTATTTACAATATTATTTTTATAACTTTACGTGCTA  436

seq1  ACCTATTTCAAATTAAAAGATTCCAGAAATAAAACATAAAACTCAGCTCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTTCAAATTAAAAGATTCCAGAAATAAAACATAAAACTCAGCTCT  486

seq1  CTTTTTCAAAATAGAGGACCACAATCATACATGGCTACTGGGTGAGCCAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCAAAATAGAGGACCACAATCATACATGGCTACTGGGTGAGCCAG  536

seq1  TCATCAAGAAGTGTATCAAAACCAGGAGACTTCACATGAGTCCTGTTTCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAAGAAGTGTATCAAAACCAGGAGACTTCACATGAGTCCTGTTTCT  586

seq1  TGCTCCCATAACCATTGTATCCTTGCAAAAAGCCATCTGTCATACCTATA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCATAACCATTGTATCCTTGCAAAAAGCCATCTGTCATACCTATA  636

seq1  AACACCGAGAACTTTCAAATCTAAGAAAATAATACTGTTCTTATTCTCTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCGAGAACTTTCAAATCTAAGAAAATAATACTGTTCTTATTCTCTC  686

seq1  AGTCACTTAACTCAGCATCGTCAACAGGAGGGGCTGGAACAGTGACTTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTAACTCAGCATCGTCAACAGGAGGGGCTGGAACAGTGACTTTT  736

seq1  ATCAGGAAAGTAGGTATGTTTTATATTTCAGGAATTTCTCTTCTATGTTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAAAGTAGGTATGTTTTATATTTCAGGAATTTCTCTTCTATGTTC  786

seq1  TCTTAAATCCAAACATGATTTGAGTCTACTCTACTTGCTTTTTCTTCATA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATCCAAACATGATTTGAGTCTACTCTACTTGCTTTTTCTTCATA  836

seq1  TATGTTTTAGGCTGATCTCTCATGTCTGGACCTCAAGTCTGCTGTATGAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTAGGCTGATCTCTCATGTCTGGACCTCAAGTCTGCTGTATGAG  886

seq1  TAGTTCTTCCAGCCAGTCCTACTACCAATTGAGATCACATACCATTTGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTCCAGCCAGTCCTACTACCAATTGAGATCACATACCATTTGGA  936

seq1  AACATGCTGTCTTCACAGACAGTCTTTTCTGGCATTAACGTATCCTATAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTGTCTTCACAGACAGTCTTTTCTGGCATTAACGTATCCTATAC  986

seq1  TCTGTTGACCGTTTGCCTTAGCATATTCTTCCTAATTTTAAAACATTGCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGACCGTTTGCCTTAGCATATTCTTCCTAATTTTAAAACATTGCA  1036

seq1  TTAGCTTCTCTGTGCTCTCCCAGCAATGAGTTTTGAAAAAAATGTATACA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTCTCTGTGCTCTCCCAGCAATGAGTTTTGAAAAAAATGTATACA  1086

seq1  TCCCACTTGCTTCTGTGATGCTACACATGTGTGGCAACAATTATTTTTGT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTGCTTCTGTGATGCTACACATGTGTGGCAACAATTATTTTTGT  1136

seq1  ATTACCGTACAGAGCTGAAGTAGGTGATTATAGAGGTGAGGGAGGCACGA  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCGTACAGAGCTGAAGTAGGTGATTATAGAGGTGAGGGAGGCACGA  1186

seq1  CGTATTTTAAAGAGCCCTTGAATTC  1218
      |||||||||||||||||||||||||
seq2  CGTATTTTAAAGAGCCCTTGAATTC  1211


seq1: chr4_28932390_28933555
seq2: B6Ng01-294E21.g_69_1225

seq1  GAATTCAATCACTCCTTGTAATTGTATTTCCTGGTCACTATTAAGAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCACTCCTTGTAATTGTATTTCCTGGTCACTATTAAGAAGGT  50

seq1  GACTTAGGAGGAAAATTGCTAGCACATATTTGTGGTAAAGCCTAAAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGGAGGAAAATTGCTAGCACATATTTGTGGTAAAGCCTAAAATCC  100

seq1  TTTCTTCTAGAGTCCTGTCAAAACTTTCACTTCACAGAAGCCCAAAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTAGAGTCCTGTCAAAACTTTCACTTCACAGAAGCCCAAAACTC  150

seq1  TCTTTCTGTCCATTCTACACTCTATCTCCAATCGATGGCATTCAGTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTCCATTCTACACTCTATCTCCAATCGATGGCATTCAGTTCTC  200

seq1  AGATGTCAGAACCCACTTTTAATCTCAATTGGACACTTTTAATATTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCAGAACCCACTTTTAATCTCAATTGGACACTTTTAATATTTACA  250

seq1  ATCTTATATTTATGAATAAGACTTCCATGTGAAGAGCACACTCTACTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATATTTATGAATAAGACTTCCATGTGAAGAGCACACTCTACTTCA  300

seq1  GAAGCATCATCATCTCTAATTTCTCCCACACACGATGAAACATTAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATCATCATCTCTAATTTCTCCCACACACGATGAAACATTAGGAAA  350

seq1  ACATAGAGATCTCTCAGTCAAACAACCCAAATTGAGTCTTTCCTTGACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGATCTCTCAGTCAAACAACCCAAATTGAGTCTTTCCTTGACTT  400

seq1  GATGTGATCTATGTGTTCTAGATGAAGGTGATATTTGAAAAGTACCTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGATCTATGTGTTCTAGATGAAGGTGATATTTGAAAAGTACCTATG  450

seq1  ATAAAATAGCACACAGGTTTATTTTTTTTATGTCATAGTTTAGCCATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAGCACACAGGTTTATTTTTTTTATGTCATAGTTTAGCCATATG  500

seq1  CGTGCACTTCTAAAGAAACTTTATGTGCTTATTTTATTTTATTTTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACTTCTAAAGAAACTTTATGTGCTTATTTTATTTTATTTTATTTT  550

seq1  ATTTTATTTTTGATGTGTGTTTTGCCATCTTTTTACCACATTTGTACCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTTGATGTGTGTTTTGCCATCTTTTTACCACATTTGTACCTA  600

seq1  TTACCTGTAGAGGCCAGAAATGACACTGGATTCACTAGAACTGAAGTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTAGAGGCCAGAAATGACACTGGATTCACTAGAACTGAAGTTAC  650

seq1  AGATGGTTGGGAGCTGATATGTAGGTGCTGGGAATTGAACCCAGGTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTGGGAGCTGATATGTAGGTGCTGGGAATTGAACCCAGGTCCTT  700

seq1  TGGAAGAGAAGCCAGTGCTCTTAGCTGCTGAGCCATGTCTCTAGTCCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGAAGCCAGTGCTCTTAGCTGCTGAGCCATGTCTCTAGTCCTAG  750

seq1  AGAAAAATTAAGAATCATCAGGTTGCCAAGGAAGGTCAAAAATGATAGTA  800
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGAAAAATTAAGAATCATCA-GTTGCCAAGGAAGGTCAAAAATGATAGTA  799

seq1  CTAAGCTGGTGTCTACAGAGGTTACTGTTGCCTTTCTGTATGCTCTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTGGTGTCTACAGAGGTTACTGTTGCCTTTCTGTATGCTCTTTAT  849

seq1  TTTCTCGATTCAGGAGTTTAGAAATAATTTCATTAAGTGGTGTTGTAAAC  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCTCGATTCAGGAGTTTAGAAATAATTTCATTAAGTGGTGTTGT-AAC  898

seq1  CTGTTATAGAAACAAAACACAACTTAGAGCTTAAAGTGTATGCTATGATA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGTTATAGAAACAAAACACAACTTAGAGCTT-AAGTGTATGCTATGATA  947

seq1  ATGTTTACACAGATAAATTAACATTTCTATGTGTTTAATGTATACTATTT  1000
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  ATGTTTACACAGATAAA-TAACATTTCTATGTGTTT-ATGTATACTATTT  995

seq1  TAGCATATTTGATAGCAACCAAGA-GGTGAAAGAATTTTTCAAATATTTT  1049
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  TAGCATATTTGATAGC-ACCAAGAGGGTGAAAGAATTTTTCAAATATTTT  1044

seq1  GTCTTTTAAATCAGTTAATTAGGATTCATTCCTATGAG-CCTTAACACCA  1098
      |||||||||||||||| ||||||| ||| ||||||||| |||||||||| 
seq2  GTCTTTTAAATCAGTT-ATTAGGAATCA-TCCTATGAGCCCTTAACACCC  1092

seq1  AACA-GCAGGTGCTATTTACTGTGTTGTATTCT-ACAGTAGTTACTTTTG  1146
      |||| ||||||||||||  ||| |||  ||||| ||||||||||||||  
seq2  AACAGGCAGGTGCTATTACCTGGGTTTGATTCTCACAGTAGTTACTTT--  1140

seq1  TAACTTTTATAATTTAGGCC  1166
         |  |||||| |||||||
seq2  --GCACTTATAA-TTAGGCC  1157


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