BAC Information

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BAC

Clone NameB6Ng01-294F08
Chromosome4 (Build37)6 (Build37)
Map Location 65,798,834 - 65,799,94874,109,826 - 74,110,346
singlet/doubletsingletsinglet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294F08.bB6Ng01-294F08.g
ACCGA090489GA090490
length1,1181,087
definitionB6Ng01-294F08.b B6Ng01-294F08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,798,834 - 65,799,948)(74,109,826 - 74,110,346)
sequence
gaattctcccaaccacaactcccctcagctacatatttccattcattttt
ctgtccctctgtgcttctctcctgtctctccccatgcctgatccttaccc
ctattacacgcaatactcccctctctcactcaagtccctccctcccctac
ctcccataactgttttgttttcagtcctaagtgagatttaaacatcttta
cttggccttccttcttgtttaacttctttgtttataggggtgtatcaggg
gtattctgaactttttggttaacatccacttatcaatggctacataccat
tcatgacttttggatttgggttatcacattcaagatgatattttctagtt
ccatccacttgcctgcaaaattcatgatgtcctatttttaataggtgatt
agtattctattgtgtaaatggaatctaaatcccaaatctataagcacaat
ttctggttgcctcctagaaaactaagcaactttaaatctccaggcacaga
ctctccccagattttctgccttgttctgatcaattctttggtggcttcac
cagctccattttttccttcagtaatgcttctaacatcccccccccccttt
gcttgagaaatcacactaagcacacatcactctttgactagtctatggtt
atttgtgcttccaatgtctgtttataattactcagcattatcttaattac
aatgatgcaaagcagagcatggggggtattttaaaaaatggtgcaggaat
aaaatacgccatgagaaataattcacagctagatgacgacaaggctgtgg
ttttggttgtaattggaaatagcactattaatacgatagccattcattct
atataatgaaaaaaattgaagcactttttgcaattaccccattccaaatg
aaattaacattccatggcattttccataaaatggttcgtttgcatacatc
ggtggagacaattagcctgagctgaacgaagtcttgcaactggagatagg
atggagtagggatagtcagacatagctaagagagaaagttgcaaaaaata
aactcatccttttgcatcagtgaacatggaggattcaggatgtgccaaaa
tatgtagtatgtaggaaa

gaattcctgatctttccagagcttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaatccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttctgtttccacttggttgatttcacccctgagtttgattatt
tcctgccgtctactcctctgggtgaatttgctttccttttttctagagct
ttttagatgtgttgtcaagctgctagtatgtgctctctcccgttttttct
tgaaggcactcaataagctatgagtttccttcttagaaatgctttcattg
tgtccaaaaggttaggtacgtgtggcttcatttgcataactctaaaaggt
cttaattccttctttaattccatccttgaccaaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_65798834_65799948
seq2: B6Ng01-294F08.b_46_1163 (reverse)

seq1  TTTCCTACATACTACATATTTT-GCACATCCTG-ATCCTCCCTGTTCACC  48
      |||||||||||||||||||||| |||||||||| ||||||| |||||| |
seq2  TTTCCTACATACTACATATTTTGGCACATCCTGAATCCTCCATGTTCA-C  49

seq1  TGATGC-AAAGGATGAGTTTA-TTTTTGCAACTTTCTCCTCTTAGCTATG  96
      |||||| |||||||||||||| ||||||||||||||| ||||||||||||
seq2  TGATGCAAAAGGATGAGTTTATTTTTTGCAACTTTCT-CTCTTAGCTATG  98

seq1  TCTGACTATCCCTACTCCATCCTATCTCCAGTTGC-AGACTTCGTTCAGC  145
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTGACTATCCCTACTCCATCCTATCTCCAGTTGCAAGACTTCGTTCAGC  148

seq1  TCCAGGCTAATTGTCTCCACCGATGTATGCAAACGAACCA-TTTATGGAA  194
      | |||||||||||||||||||||||||||||||||||||| |||||||||
seq2  T-CAGGCTAATTGTCTCCACCGATGTATGCAAACGAACCATTTTATGGAA  197

seq1  AATGCCATGGAATGTTAATTTCATTTGGAATGGGGTAATTGCAAAAAGTG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATGGAATGTTAATTTCATTTGGAATGGGGTAATTGCAAAAAGTG  247

seq1  CTTCAATTTTTTTCATTATATAGAATGAATGGCTATCGTATTAATAGTGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTTTTTTCATTATATAGAATGAATGGCTATCGTATTAATAGTGC  297

seq1  TATTTCCAATTACAACCAAAACCACAGCCTTGTCGTCATCTAGCTGTGAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCAATTACAACCAAAACCACAGCCTTGTCGTCATCTAGCTGTGAA  347

seq1  TTATTTCTCATGGCGTATTTTATTCCTGCACCATTTTTTAAAATACCCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTCATGGCGTATTTTATTCCTGCACCATTTTTTAAAATACCCCC  397

seq1  CATGCTCTGCTTTGCATCATTGTAATTAAGATAATGCTGAGTAATTATAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCTGCTTTGCATCATTGTAATTAAGATAATGCTGAGTAATTATAA  447

seq1  ACAGACATTGGAAGCACAAATAACCATAGACTAGTCAAAGAGTGATGTGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATTGGAAGCACAAATAACCATAGACTAGTCAAAGAGTGATGTGT  497

seq1  GCTTAGTGTGATTTCTCAAGCAAAGGGGGGGGGGGATGTTAGAAGCATTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTGTGATTTCTCAAGCAAAGGGGGGGGGGGATGTTAGAAGCATTA  547

seq1  CTGAAGGAAAAAATGGAGCTGGTGAAGCCACCAAAGAATTGATCAGAACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGAAAAAATGGAGCTGGTGAAGCCACCAAAGAATTGATCAGAACA  597

seq1  AGGCAGAAAATCTGGGGAGAGTCTGTGCCTGGAGATTTAAAGTTGCTTAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAAAATCTGGGGAGAGTCTGTGCCTGGAGATTTAAAGTTGCTTAG  647

seq1  TTTTCTAGGAGGCAACCAGAAATTGTGCTTATAGATTTGGGATTTAGATT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGGAGGCAACCAGAAATTGTGCTTATAGATTTGGGATTTAGATT  697

seq1  CCATTTACACAATAGAATACTAATCACCTATTAAAAATAGGACATCATGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTACACAATAGAATACTAATCACCTATTAAAAATAGGACATCATGA  747

seq1  ATTTTGCAGGCAAGTGGATGGAACTAGAAAATATCATCTTGAATGTGATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCAGGCAAGTGGATGGAACTAGAAAATATCATCTTGAATGTGATA  797

seq1  ACCCAAATCCAAAAGTCATGAATGGTATGTAGCCATTGATAAGTGGATGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAATCCAAAAGTCATGAATGGTATGTAGCCATTGATAAGTGGATGT  847

seq1  TAACCAAAAAGTTCAGAATACCCCTGATACACCCCTATAAACAAAGAAGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAAAAGTTCAGAATACCCCTGATACACCCCTATAAACAAAGAAGT  897

seq1  TAAACAAGAAGGAAGGCCAAGTAAAGATGTTTAAATCTCACTTAGGACTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGAAGGAAGGCCAAGTAAAGATGTTTAAATCTCACTTAGGACTG  947

seq1  AAAACAAAACAGTTATGGGAGGTAGGGGAGGGAGGGACTTGAGTGAGAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAGTTATGGGAGGTAGGGGAGGGAGGGACTTGAGTGAGAGA  997

seq1  GGGGAGTATTGCGTGTAATAGGGGTAAGGATCAGGCATGGGGAGAGACAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTATTGCGTGTAATAGGGGTAAGGATCAGGCATGGGGAGAGACAG  1047

seq1  GAGAGAAGCACAGAGGGACAGAAAAATGAATGGAAATATGTAGCTGAGGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGCACAGAGGGACAGAAAAATGAATGGAAATATGTAGCTGAGGG  1097

seq1  GAGTTGTGGTTGGGAGAATTC  1115
      |||||||||||||||||||||
seq2  GAGTTGTGGTTGGGAGAATTC  1118


seq1: chr6_74109826_74110346
seq2: B6Ng01-294F08.g_635_1152 (reverse)

seq1  TACCTTGGTCAAGGATGGAATACAGAAAGAAATTAAAGACTTTTTAGAGT  50
      |||||||||||||||||||||  |  ||| |||| ||||| |||||||||
seq2  TACCTTGGTCAAGGATGGAATTAAAGAAGGAATT-AAGACCTTTTAGAGT  49

seq1  TTAATGAAAATGAAGCCACAGCATACCCAAACCTATGGGACACAATGAAA  100
      |  ||| ||||||||||||| | || || ||||| | |||||||||||||
seq2  T--ATGCAAATGAAGCCACA-CGTA-CCTAACCTTTTGGACACAATGAAA  95

seq1  GCATTTCTAAGAGGGAAACTCATAGCT--CTGACTGCCGCCAAGAAGAAA  148
      |||||||||||| ||||||||||||||   ||| ||||  |||||| |||
seq2  GCATTTCTAAGAAGGAAACTCATAGCTTATTGAGTGCCTTCAAGAAAAAA  145

seq1  CTGGAGAGAACACACACTAGCAGCTTGACAACACATCT-AAAAGCTCTAG  197
      | ||||||| |||| ||||||||||||||||||||||| |||||||||||
seq2  CGGGAGAGAGCACATACTAGCAGCTTGACAACACATCTAAAAAGCTCTAG  195

seq1  AAAAAAGG-AAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATTATC  246
      |||||||| |||||||||||||| |||||||||||||||||||||| |||
seq2  AAAAAAGGAAAGCAAATTCACCC-AGAGGAGTAGACGGCAGGAAATAATC  244

seq1  AAACTCAGGGGTCAAATCAACCAAGTGGAAACAAGAAGGACTATTCAAAG  296
      |||||||||||| ||||||||||||||||||| ||||| |||||||||||
seq2  AAACTCAGGGGTGAAATCAACCAAGTGGAAAC-AGAAGAACTATTCAAAG  293

seq1  AATTAACCAAAGGACGAGTTAGTTCTTTGAGAAAATCAACAAGATAGATA  346
      ||||||||||| || ||||| |||||||||||||||||||||||||||||
seq2  AATTAACCAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATA  343

seq1  AACCCTTAGCTAGACTCACTAGAGGGCACAGGGACAACATCCTAATTAAC  396
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  AACCCTTAGCTAGACTCACTAAAGGGCACAGGGACAAAATCCTAATTAAC  393

seq1  AAAATCAGAACTGAAAAGGGAGACATAACAACAGATCCTGACGAAATCCA  446
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  AAAATCAGAAATGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCA  443

seq1  AAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAA  493

seq1  ACCTGGACGAAATGGACAAATTTCT  521
      |||||||||||||||||||||||||
seq2  ACCTGGACGAAATGGACAAATTTCT  518


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