BAC Information

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BAC

Clone NameB6Ng01-294F19
Chromosome4 (Build37)
Map Location 133,832,425 - 133,970,545
singlet/doubletdoublet
Overlap genePdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2
Upstream geneD4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1
Downstream geneStmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294F19.bB6Ng01-294F19.g
ACCGA090509GA090510
length1,187430
definitionB6Ng01-294F19.b B6Ng01-294F19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,832,425 - 133,833,618)(133,970,110 - 133,970,545)
sequence
gaattcttttagctaagtctgcaagtgatattatgtgtatgtgacttttt
catttgataagattttttttgttaactaaagcctttcggttcacgttttt
acacttccagattaattcagtctaggcgttttacatatttcatttttttt
gtgaggtttatcttttatcaccttctgaacacactaatggatctgttgat
tttgtgatggcagggattgaatccagagccttgtacatgccaggcaagcg
ctcttcactgaaccacagccagacctaatgtgacggtatggcggttcaag
cactgaggggacaaggagagttgctgataacggcaatatcctgatagtct
attgccttttgcatcttaacgcttaaaaagatccccgtggggttagtggt
aggctacttccctcacacctaaggcccaaggttctaccccagcaccggag
gtgggcagctagtgccttataaagcctcacctggatataatggtagcttc
taattcatcctaaagactggtgttctggtttaagaaagaatcctttcctt
aatgttcctggattagcaagaacaatctggaggcaaccatgcagttagac
tttcccttcaggagttgagtctcttgctttctgacagatgccaggtgacc
atatgaaaacgacaacttttctacttgaaaagcagttgagggcatagaat
tttatccatttgcatcgtctctcactttggaagagagcgaccagtatttg
tgacagtgattaccagtcccattactgcatcacaagacaagagaaaacag
catcactgtcaaagtgacagagactccagtgatccaacaggaagccacac
cagggccagcaactccagggtgagctcatttggtttcttcgactttatgc
tgagatttagaaaagtcttaaaactcaaaattaataatcaagtattacag
ttgttgtaacgcatgtttttcagaacagaagaacacgtcctcggtttaca
gcagatgctcaagtgcccgcatggcccagtgcagtggtttatttactcaa
caatgctcagcactgaggtaggcacgagccggtgagactcatgactgaat
tcacttggagagcctacagcccttgcaagctctaacgcaactgcgcttaa
cctgctagacttcagtatccgtctcatcaggccattc
ttattcacccagtggaatattacaggagcatcaaaaagaactcataagca
gtgcaccactgtgcacacctgaaatcccagtacttcagaggaccaggagc
ccaaggccagtctcagctacacagtaactttgacgcccacctagaactca
caagaccctgtcttagaaagacaaaacaagaaagaaaaacatggaaaaca
ctagctagctaggtgtggtggctcacatctgtaacttcagcactcaggag
agtgaggcagaaagactgacactcgttcaaggtcactctgggctacatag
tgagttttaagctagcctgggctatgatgcaagactctgtctcaaacaaa
caaattaactagcatgaaaaaagcctctctctctctctctctctctctct
ctctctctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_133832425_133833618
seq2: B6Ng01-294F19.b_47_1233

seq1  GAATTCTTTTAGCTAAGTCTGCAAGTGATATTATGTGTATGTGACTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAGCTAAGTCTGCAAGTGATATTATGTGTATGTGACTTTTT  50

seq1  CATTTGATAAGATTTTTTTTGTTAACTAAAGCCTTTCGGTTCACGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGATAAGATTTTTTTTGTTAACTAAAGCCTTTCGGTTCACGTTTTT  100

seq1  ACACTTCCAGATTAATTCAGTCTAGGCGTTTTACATATTTCATTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCCAGATTAATTCAGTCTAGGCGTTTTACATATTTCATTTTTTTT  150

seq1  GTGAGGTTTATCTTTTATCACCTTCTGAACACACTAATGGATCTGTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTTATCTTTTATCACCTTCTGAACACACTAATGGATCTGTTGAT  200

seq1  TTTGTGATGGCAGGGATTGAATCCAGAGCCTTGTACATGCCAGGCAAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATGGCAGGGATTGAATCCAGAGCCTTGTACATGCCAGGCAAGCG  250

seq1  CTCTTCACTGAACCACAGCCAGACCTAATGTGACGGTATGGCGGTTCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACTGAACCACAGCCAGACCTAATGTGACGGTATGGCGGTTCAAG  300

seq1  CACTGAGGGGACAAGGAGAGTTGCTGATAACGGCAATATCCTGATAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGGGGACAAGGAGAGTTGCTGATAACGGCAATATCCTGATAGTCT  350

seq1  ATTGCCTTTTGCATCTTAACGCTTAAAAAGATCCCCGTGGGGTTAGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTTTTGCATCTTAACGCTTAAAAAGATCCCCGTGGGGTTAGTGGT  400

seq1  AGGCTACTTCCCTCACACCTAAGGCCCAAGGTTCTACCCCAGCACCGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACTTCCCTCACACCTAAGGCCCAAGGTTCTACCCCAGCACCGGAG  450

seq1  GTGGGCAGCTAGTGCCTTATAAAGCCTCACCTGGATATAATGGTAGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGCTAGTGCCTTATAAAGCCTCACCTGGATATAATGGTAGCTTC  500

seq1  TAATTCATCCTAAAGACTGGTGTTCTGGTTTAAGAAAGAATCCTTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATCCTAAAGACTGGTGTTCTGGTTTAAGAAAGAATCCTTTCCTT  550

seq1  AATGTTCCTGGATTAGCAAGAACAATCTGGAGGCAACCATGCAGTTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCCTGGATTAGCAAGAACAATCTGGAGGCAACCATGCAGTTAGAC  600

seq1  TTTCCCTTCAGGAGTTGAGTCTCTTGCTTTCTGACAGATGCCAGGTGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTCAGGAGTTGAGTCTCTTGCTTTCTGACAGATGCCAGGTGACC  650

seq1  ATATGAAAACGACAACTTTTCTACTTGAAAAGCAGTTGAGGGCATAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAACGACAACTTTTCTACTTGAAAAGCAGTTGAGGGCATAGAAT  700

seq1  TTTATCCATTTGCATCGTCTCTCACTTTGGAAGAGAGCGACCAGTATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCATTTGCATCGTCTCTCACTTTGGAAGAGAGCGACCAGTATTTG  750

seq1  TGACAGTGATTACCAGTCCCATTACTGCATCACAAGACAAGAGAAAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGATTACCAGTCCCATTACTGCATCACAAGACAAGAGAAAACAG  800

seq1  CATCACTGTCAAAGTGACAGAGACTCCAGTGATCCAACAGGAAGCCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTGTCAAAGTGACAGAGACTCCAGTGATCCAACAGGAAGCCACAC  850

seq1  CAGGGCCAGCAACTCCAGGGTGAGCTCATTTGGTTTCTTCGACTTTATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCCAGCAACTCCAGGGTGAGCTCATTTGGTTTCTTCGACTTTATGC  900

seq1  TGAGATTTAGAAAAAGTCTTAAAACTCAAAATTAATAATCAAGTATTACA  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTAG-AAAAGTCTTAAAACTCAAAATTAATAATCAAGTATTACA  949

seq1  GTTG-TGTAACGCAATGTTTTCAGAACAGAAGAACACGTCCTCGGGTTAC  999
      |||| |||||||||   |||||||||||||||||||||||||||| ||||
seq2  GTTGTTGTAACGCATGTTTTTCAGAACAGAAGAACACGTCCTCGGTTTAC  999

seq1  AGCAGATGCTCAAGTGCCCGCATGGCCCAGTGCAGTGGTTTAATTACTCA  1049
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCAGATGCTCAAGTGCCCGCATGGCCCAGTGCAGTGGTTTATTTACTCA  1049

seq1  AACAAATGCTCAGCCACCTGAAGGTAGGCACGAGCC-GTGAGACTCCATG  1098
      |   ||||||||||   ||| ||||||||||||||| |||||||| ||||
seq2  A--CAATGCTCAGC--ACTG-AGGTAGGCACGAGCCGGTGAGACT-CATG  1093

seq1  ACTGATTCAACTTGGAAGAG-CTACAGGCCCTGCAGAGCTCTAACGCACC  1147
      ||||| |  |||||| |||| |||||| || |||| ||||||||||||  
seq2  ACTGAATTCACTTGG-AGAGCCTACAGCCCTTGCA-AGCTCTAACGCA-A  1140

seq1  CTGCGGCTTACACCTGCTTAGCTTCAGTTATCGT-TCATCA-GCCATTC  1194
      |||| ||||| |||||||   |||||||   ||| |||||| |||||||
seq2  CTGC-GCTTA-ACCTGCTAGACTTCAGTATCCGTCTCATCAGGCCATTC  1187

seq1: chr4_133970110_133970545
seq2: B6Ng01-294F19.g_66_501 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGGCTTTTTTCATGCTAGTTAATTTGTTTGTTTGAGACAGAGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCTTTTTTCATGCTAGTTAATTTGTTTGTTTGAGACAGAGTCTT  100

seq1  GCATCATAGCCCAGGCTAGCTTAAAACTCACTATGTAGCCCAGAGTGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCATAGCCCAGGCTAGCTTAAAACTCACTATGTAGCCCAGAGTGACC  150

seq1  TTGAACGAGTGTCAGTCTTTCTGCCTCACTCTCCTGAGTGCTGAAGTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACGAGTGTCAGTCTTTCTGCCTCACTCTCCTGAGTGCTGAAGTTAC  200

seq1  AGATGTGAGCCACCACACCTAGCTAGCTAGTGTTTTCCATGTTTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGAGCCACCACACCTAGCTAGCTAGTGTTTTCCATGTTTTTCTTT  250

seq1  CTTGTTTTGTCTTTCTAAGACAGGGTCTTGTGAGTTCTAGGTGGGCGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTGTCTTTCTAAGACAGGGTCTTGTGAGTTCTAGGTGGGCGTCA  300

seq1  AAGTTACTGTGTAGCTGAGACTGGCCTTGGGCTCCTGGTCCTCTGAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTGTGTAGCTGAGACTGGCCTTGGGCTCCTGGTCCTCTGAAGTA  350

seq1  CTGGGATTTCAGGTGTGCACAGTGGTGCACTGCTTATGAGTTCTTTTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTTCAGGTGTGCACAGTGGTGCACTGCTTATGAGTTCTTTTTGA  400

seq1  TGCTCCTGTAATATTCCACTGGGTGAATAAGAATTC  436
      ||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGTAATATTCCACTGGGTGAATAAGAATTC  436