BAC Information

Click to search

BAC

Clone NameB6Ng01-294L08
Chromosome4 (Build37)
Map Location 145,587,134 - 145,703,089
singlet/doubletdoublet
Overlap geneLOC666386, LOC666390, LOC100041433
Upstream geneVps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084
Downstream geneLOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294L08.bB6Ng01-294L08.g
ACCGA090768GA090769
length1,1191,126
definitionB6Ng01-294L08.b B6Ng01-294L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,587,134 - 145,588,401)(145,701,969 - 145,703,089)
sequence
gaattcttctaagcccacctacttatgggccttttaattaattagcttcc
cacttcttcacagcaatgtttggtgttttgaatttttgcttgcttgcttg
cttgcttgcttgcttactcgtttctttgcttttaatttgtctttttctta
aacccatctaatcgtgcaggaatcccacactccccatcgagaaccactcc
tccaactctgttgcaggctgccttccacacaacttcccaggacctactct
gcacagcttcttcacaaagttgctgccagactagaccagagctggatgta
gtaggacactgcacctgggttctgaacccttcagatacaatggatgctgt
ctaacttctcatattgtgcgtgtagccctctgggctataaatgcacaaaa
ttaagcagtccctttgaactctgatgctcagaacagatacccaaaacaaa
caaaaacgtagataaaatgtccttggctcaaaccacaaaccatagaggta
tcttataaggagcacaatttatgtgatatccaagacaaagaatggaaaac
ccacagtcatgatcaaggacattaaagtttgtaaaccatgtgaatccact
cagacagaaacaaaatgaatcttgggcaagaaaataataccagatgcctg
aaggaaataaggacaatataaaatattaaaattatgttcaataggtgctt
agaaataccacaaaaaaaaaaaatcctgaagagaaaatgcagtgaggcaa
ataaaaatgatacatagagaacctgtgggagacagattatcagacttaaa
gaaaaagtagaggaggtggatgcctcaatcaaagaaaatggtgaattaaa
atgatgttaggtcaagggacaatattatttactgcttgaaggatgaggca
ataaagagaaactcctttgggaaaactgtcctgatctttgccaaaaaaaa
agtaggaagaagaagaagaagaaagaagaagaaagagaagaaagaaggaa
gaagaagaagagacgaagaagaagaggaagagaggagagaaggaagagaa
gaagaagagagtagaagaaggaactggacaactacaatacatactgcact
ggtttgttcagtaatggtt
gaattcttctttatcatgaatttatttatgtaccagaaacaatactgcat
gagtcacaagggtaacagaaatcatttcttcatatttgttagaacaggca
ggcaaaatcctggacatatcacaccaagcttcaggtgtcatgtgggaggt
tttattgacagaagcagtgtctgagaggggtgagaggtcagaagaagaga
agggtctgtgcgacgagggaacactcttttattcagtccatgaggctggg
aagcgtgtgaaagggaattggtgccctggcaacagatacaggggcagtgc
tgttgcctacagatgaggagtgtcctcactgggtctagaacctaactgta
aagacacttctagctgtccacagatgcacccgatgctaagcacattgctt
atatttgtaggatttctcttcaatataaattcttttatgacatttttgtg
atagtgacatgaaaaggctttactggattgattacttttatagggtttgg
cttcagtgtgaattcttttctttttgtagactctagagaccagttttttt
tccatattgtgtcccagtctaatcttgtaggacatttgtctgagggaaat
gcaaaggcagatacagattaacacgttctctttccttggaaatatcgacc
taaaggaagcacaaatgttttatgcaaacttccattaatatgcagcattt
ataaaatgagtttcaataacaacaatgacaacaaacagactcctgaacag
aagtggagtgctcttcatgtacaaaatttaatatttgtgacccttgtgac
tcacacagtactgttgcaaaatcatgttttgtacattagtaatgctcaca
ccctaatttgagaggctgaagtatgctcatgtcattgtggaacacttcag
aacaattccccttatgtacattgatgcaaaatactcaataaaatactcaa
aatactgaatccaaaagacatcactaagaatctatccaaaatgacgaaga
ttgtttttctcatccaataatatcttggaagaagtttccattccttctat
tcttctcagttctgtcaactttttctcccgtctgggatctaccccttttc
tgtatatctcagtagggaacaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_145587134_145588401
seq2: B6Ng01-294L08.b_46_1164

seq1  GAATTCTTCTAAGCCCACCTACTTATGGGCCTTTTAATTAATTAGCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTAAGCCCACCTACTTATGGGCCTTTTAATTAATTAGCTTCC  50

seq1  CACTTCTTCACAGCAATGTTTGGTGTTTTGAATTTTTGCTTGCTTGCTTG  100
      |||||||||||||||||||||||||||||||||||               
seq2  CACTTCTTCACAGCAATGTTTGGTGTTTTGAATTT---------------  85

seq1  CTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCTTGCT  150
                               |||||||||||||||||||||||||
seq2  -------------------------TTGCTTGCTTGCTTGCTTGCTTGCT  110

seq1  TGCTTATTCGTTTCTTTGCTTTTAATTTGTCTTTTTCTTAAACTCATCTA  200
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCTTACTCGTTTCTTTGCTTTTAATTTGTCTTTTTCTTAAACCCATCTA  160

seq1  ATCGTGCAGGAATCCCACACTCCCCATCAGGAACCACTCCTCCAACTCTG  250
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  ATCGTGCAGGAATCCCACACTCCCCATCGAGAACCACTCCTCCAACTCTG  210

seq1  TTGCAGGCTGCCTTCCACACAACTTCCCAGGACCTACTCTGCAAAGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGCAGGCTGCCTTCCACACAACTTCCCAGGACCTACTCTGCACAGCTTC  260

seq1  TTCACAAAGTTGCTGCCAGACTAGACCAGAGCTGGATGTAGTAGGACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAAGTTGCTGCCAGACTAGACCAGAGCTGGATGTAGTAGGACACT  310

seq1  GCACCTGGGTTCTGAACCCTTCAGATTCAATGGATCCTGTCTAACTTCTC  400
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  GCACCTGGGTTCTGAACCCTTCAGATACAATGGATGCTGTCTAACTTCTC  360

seq1  ATATTGTGCGTGTAGCCCTCTGGGCTATAAATGCACAAAATTAAGCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGCGTGTAGCCCTCTGGGCTATAAATGCACAAAATTAAGCAGTC  410

seq1  CCTTTGAATTCTGATGCTCAGAACAGATACCCAAAACAAACAAAAACGTA  500
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAACTCTGATGCTCAGAACAGATACCCAAAACAAACAAAAACGTA  460

seq1  GATAAAATGTCCTTGGCTCAAACCACAAACCATAGAGGTATCTTATAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAATGTCCTTGGCTCAAACCACAAACCATAGAGGTATCTTATAAGG  510

seq1  AGCACAATTTATGTGATATCCAAGACAAAGAATGGAAAACCCACAGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAATTTATGTGATATCCAAGACAAAGAATGGAAAACCCACAGTCAT  560

seq1  GATCAAGGACATTAAAGTTTGTAAACC-TGTGAATCCACTCAGACAGGAA  649
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  GATCAAGGACATTAAAGTTTGTAAACCATGTGAATCCACTCAGACAGAAA  610

seq1  CAAAATGAATCTTGGTCAAGAAAATAACACCAGATGCCTGAAGGAAATAA  699
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  CAAAATGAATCTTGGGCAAGAAAATAATACCAGATGCCTGAAGGAAATAA  660

seq1  GGACAATATAAAATATTAAAATTATGTTCAATAGGTGCTTAGAAATGCCA  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGACAATATAAAATATTAAAATTATGTTCAATAGGTGCTTAGAAATACCA  710

seq1  C-ACAAAAAAAAATCCTGAAGAGAAAATGCAGTGAGGCAAATAAAAATGA  798
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAATCCTGAAGAGAAAATGCAGTGAGGCAAATAAAAATGA  760

seq1  TACATAGAGAACCTGTGGGAGACAGATTATCAGACTTAAAGAAAAAGTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAGAACCTGTGGGAGACAGATTATCAGACTTAAAGAAAAAGTAG  810

seq1  AGGAGGTGGATGCCTCAATCAAAGAAAATGGTGAATTAAAATGATGTTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTGGATGCCTCAATCAAAGAAAATGGTGAATTAAAATGATGTTAG  860

seq1  GTCAAGGGACAATATTATTTACTGCTTGAAGGATGAGGCAATAAAGAGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGGACAATATTATTTACTGCTTGAAGGATGAGGCAATAAAGAGAA  910

seq1  ACTCCTTT-GGAAAACTGTCCTGATCTTTGTCAAAAAAAAAGTAAGGAAA  997
      |||||||| ||||||||||||||||||||| ||||||||||||      |
seq2  ACTCCTTTGGGAAAACTGTCCTGATCTTTGCCAAAAAAAAAGT------A  954

seq1  GGAAGAAAGAAAGAAAGAAAGAGAGAGAGACAGAAAGAAAGAAAGAAAGA  1047
      |||||         |||||  |||       ||||||||   ||||||||
seq2  GGAAG---------AAGAAGAAGA-------AGAAAGAA--GAAGAAAGA  986

seq1  -AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGCG  1096
       ||||||||| |||   |||||   |||| |  |||||  | || ||| |
seq2  GAAGAAAGAAGGAA--GAAGAA--GAAGAGACGAAGAAGAAGAGGAAGAG  1032

seq1  AGAGAGAGACAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  1146
      || |||||                                          
seq2  AG-GAGAG------------------------------------------  1039

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGACAGACAGTAAGAAAGACAG  1196
                     ||| |||| |  |||| ||| |||           
seq2  ---------------AAGGAAGAGAAGAAGA-AGAGAGT-----------  1062

seq1  ACAGACAGAAAGAGAGAAAGAAAACTAGAACAAAATTACAATACATACTG  1246
                ||| |||| |  |||| |   | || ||||||||||||||
seq2  ----------AGA-AGAAGG--AACTGG---ACAACTACAATACATACTG  1096

seq1  CACT-GTTTGTTGATAAATGGTT  1268
      |||| ||||||| |  |||||||
seq2  CACTGGTTTGTTCAGTAATGGTT  1119

seq1: chr4_145701969_145703089
seq2: B6Ng01-294L08.g_67_1192 (reverse)

seq1  TTGTTTGTTTTCCTACTGAG--ATACAGAAAGGGGTTAGAT-CCAGAAGG  47
      ||||||| || |||||||||  ||||||||| ||| ||||| ||||| ||
seq2  TTGTTTG-TTCCCTACTGAGATATACAGAAAAGGGGTAGATCCCAGACGG  49

seq1  GAGAAAAAGTGGACAGGAACTGAGAAGAATAGAGGGAATGGAAAC-TCTT  96
      |||||||||| |||| ||||||||||||||||| ||||||||||| ||||
seq2  GAGAAAAAGTTGACA-GAACTGAGAAGAATAGAAGGAATGGAAACTTCTT  98

seq1  -CAAGATA-TATTGGATGAG-AAAACAATCTTCGTCATTTTGGATAGATT  143
       ||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  CCAAGATATTATTGGATGAGAAAAACAATCTTCGTCATTTTGGATAGATT  148

seq1  CTTAGTGATGTCTTTTGGATTCAGTA-TTTGAGTATTTTATTGAGTATTT  192
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTAGTGATGTCTTTTGGATTCAGTATTTTGAGTATTTTATTGAGTATTT  198

seq1  TGCATCAATGTACATAAGGGGAATTGTTCTGAAAGTG-TCCACAATGACA  241
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  TGCATCAATGTACATAAGGGGAATTGTTCTG-AAGTGTTCCACAATGACA  247

seq1  TGAGCATACTTCAGCCTCTCAAATTAGGGTTGTGAGCATTACTAATGTAC  291
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGAGCATACTTCAGCCTCTCAAATTAGGG-TGTGAGCATTACTAATGTAC  296

seq1  AAAACATGATTTTGCAACAGTACTGTGTGAGTCACAAGGGTCACAAATAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGATTTTGCAACAGTACTGTGTGAGTCACAAGGGTCACAAATAT  346

seq1  TAAATTTTGTACATGAAGAGCACTCCACTTCTGTTCAGGAGTCTGTTTGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTGTACATGAAGAGCACTCCACTTCTGTTCAGGAGTCTGTTTGT  396

seq1  TGTCATTGTTGTTATTGAAACTCATTTTATAAATGCTGCATATTAGTGGA  441
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGTCATTGTTGTTATTGAAACTCATTTTATAAATGCTGCATATTAATGGA  446

seq1  AGTTTGCATAAAACATTTGTGCTTCCTTTAGGTCGATATTTCCAAGGAAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCATAAAACATTTGTGCTTCCTTTAGGTCGATATTTCCAAGGAAA  496

seq1  GAGAACGTGTTAATCTGTATCTGCCTTTGCATTTCCCTCAGACAAATGTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACGTGTTAATCTGTATCTGCCTTTGCATTTCCCTCAGACAAATGTC  546

seq1  CTACAAGATTAGACTGGGACACAATATGGAAAAAAAACTGGTCTCTAGAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGATTAGACTGGGACACAATATGGAAAAAAAACTGGTCTCTAGAG  596

seq1  TCTACAAAAAGAAAAGAATTCACACTGAAGCCAAACCCTATAAAAGTAAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAAAAGAAAAGAATTCACACTGAAGCCAAACCCTATAAAAGTAAT  646

seq1  CAATCCAGTAAAGCCTTTTCATGTCACTATCACAAAAATGTCATAAAAGA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAGTAAAGCCTTTTCATGTCACTATCACAAAAATGTCATAAAAGA  696

seq1  ATTTATATTGAAGAGAAATCCTACAAATATAAGCAATGTGCTTAGCATCG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTGAAGAGAAATCCTACAAATATAAGCAATGTGCTTAGCATCG  746

seq1  GGTGCATCTGTGGACAGCTAGAAGTGTCTTTACAGTTAGGTTCTAGACCC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATCTGTGGACAGCTAGAAGTGTCTTTACAGTTAGGTTCTAGACCC  796

seq1  AGTGAGGACACTCCTCATCTGTAGGCAACAGCACTGCCCCTGTATCTGTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGACACTCCTCATCTGTAGGCAACAGCACTGCCCCTGTATCTGTT  846

seq1  GCCAGGGCACCAATTCCCTTTCACACGCTTCCCAGCCTCATGGACTGAAT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCACCAATTCCCTTTCACACGCTTCCCAGCCTCATGGACTGAAT  896

seq1  AAAAGAGTGTTCCCTCGTCGCACAGACCCTTCTCTTCTTCTGACCTCTCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTGTTCCCTCGTCGCACAGACCCTTCTCTTCTTCTGACCTCTCA  946

seq1  CCCCTCTCAGACACTGCTTCTGTCAATAAAACCTCCCACATGACACCTGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCAGACACTGCTTCTGTCAATAAAACCTCCCACATGACACCTGA  996

seq1  AGCTTGGTGTGATATGTCCAGGATTTTGCCTGCCTGTTCTAACAAATATG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGTGTGATATGTCCAGGATTTTGCCTGCCTGTTCTAACAAATATG  1046

seq1  AAGAAATGATTTCTGTTACCCTTGTGACTCATGCAGTATTGTTTCTGGTA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGATTTCTGTTACCCTTGTGACTCATGCAGTATTGTTTCTGGTA  1096

seq1  CATAAATAAATTCATGATAAAGAAGAATTC  1121
      ||||||||||||||||||||||||||||||
seq2  CATAAATAAATTCATGATAAAGAAGAATTC  1126