BAC Information

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BAC

Clone NameB6Ng01-294N11
Chromosome4 (Build37)
Map Location 146,873,169 - 146,873,981
singlet/doubletsinglet
Overlap genenone
Upstream geneRex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701
Downstream geneOTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294N11.bB6Ng01-294N11.g
ACCGA090865GA090866
length8121,201
definitionB6Ng01-294N11.b B6Ng01-294N11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaagaaggcaaaaacaaacttaatgaaagactagatagagaact
cctacaagtgggtaagaaaataattacacatatgcaggacatgaacatta
tatccagagatataaaagtctaaggcatgctcaatctgaaatgaaacaag
aaatgaactctgtaagccaatatatgaagatacagcattcagaccaaaaa
aaaagaaaagaaaagaagagaaaagaaaagaaaagaaaagaaaagaaaag
aaaaggaaaggaaagaagagaaaagaaaagaaaagaaaagaaaagaaaag
aaaagaaaagaaaagaaaagaaaagaaaagaaagaaaagaaatcagcctg
tcaatgaaagaggtcttctatcctagctgtcagggggctcaggcagggat
agttatgtgatctaaaatacattctggtctctatatcaggacacgtgaaa
gtcaagaatagagtgtgggaacctgttttataatcaaacaaacaaacaaa
caaaccaaccaacaggaaacccatacaataaattggagctttgttttcta
ctttgatatcaaaatcagtttaaaaattacaaggatattagaattcatat
aggtatattcatataggtatgaatgaataaatctccgattagataatact
tttaaagttggatcctcagtggatcgcaatgcattgaggaattgagttga
ggggaatagtactgaatagagtatgaaactgaggttggctatgagaagaa
agatagatcccagccatctatctaatatttacttatttatttatttattt
atttatttattt
gaattcatacaggagagaaaccttacaaatgcagggaatgtgacaagtgc
tttactgataaaggccctctgagaattcatcagagaattcatacaggaga
gaaaccttacaaatgcagtgaatgtgacaaatgctttactgtaaaatgca
gtctgagaattcatcagagaattcatataggagagaaaccttgcaaatgc
agtgaatgtgacaaatgctttactggaataggcaatctgagaattcatca
gagaattcatacaggagagaaaccttacaaatgtagtgaatgtgacaaat
gctttacccacaaatcccatcttaatattcatcagagaattcataaagga
gagaaaccttacaaatgcagtgaatgtgacaaatgctttactgaaaaagg
cagtctgacaattcatcagagaattcatacaggagagaaaacttacaaat
gcagtgaatgtgacaaatgctttatccacaaatcccatcttaataatcat
cagaaaattcatacaggagagaaatcttacaaatgcagtgaatgtgacaa
gtgctttactgaaaaaggcagtctgagaactcatcagagaattcatacag
gagagaaaccttacaaatgcagtgaatgtgacaaatgctttacccgaaaa
ttcgatcttggtattcatcagagaattcatacaggagagaaaccgtacaa
atgcagtgaatgtggcaaatgctttactgacaaacgcactctcagaaggc
atcagagaattcatacaggagagaaaccttacaaatgcagtgaatgtgac
aaatgctttactgaaaaaggcagtctgagaactcatcagagaattcatac
aggagagaaaccttataaatgcagtgaatgtgacaaatgctttactgaaa
aagcagtctaggaactcatcagagaattcgtacaggagagaaaccttaca
aatgcagtgaatgtgataaatgctttaccaacaaccccatcttaaatatc
agaaaatcaatagaggagagaaacccttacaatagtttctatgtgacaaa
atacaatacctccaacaaatatcagtctggagaaatccatgattatgtcc
attaccgaagagaaatattttataactgaaagtgacgagaccatcttact
aggaataatccatctttgaattctcataggagagaatctacctttatgaa
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146873169_146873981
seq2: B6Ng01-294N11.b_49_860 (reverse)

seq1  --------AAATAAATAAATAAATAAATAAATAAATAGAAAAAAGATGGC  42
              |||||||||||||||||||||| ||||||  | | |||||||
seq2  AAATAAATAAATAAATAAATAAATAAATAAGTAAATATTAGATAGATGGC  50

seq1  TTGGATCTATTCTTTTTTCTCATAGCCAACCTCAGTTTCCTACTTTATTC  92
      | ||||||| ||||| ||||||||||||||||||||||| |||| |||||
seq2  TGGGATCTA-TCTTTCTTCTCATAGCCAACCTCAGTTTCATACTCTATTC  99

seq1  AGTAATATT-CCAACAACTAAATTCCTCAAAGCATTGTGATCCACTGAGG  141
      |||| |||| ||  ||||| |||||||||| |||||| ||||||||||||
seq2  AGTACTATTCCCCTCAACTCAATTCCTCAATGCATTGCGATCCACTGAGG  149

seq1  ATCCAACTTTAAAAGTATTATCCAATAGGAGATTTATTCATTCATACCTA  191
      |||||||||||||||||||||| ||| |||||||||||||||||||||||
seq2  ATCCAACTTTAAAAGTATTATCTAATCGGAGATTTATTCATTCATACCTA  199

seq1  TAT---------AATCAGTCTTCTAATATCCTTGTAATTTTTAAACTGAT  232
      |||          ||  |  ||||||||||||||||||||||||||||||
seq2  TATGAATATACCTATATGAATTCTAATATCCTTGTAATTTTTAAACTGAT  249

seq1  TTTGATATCAATGTAGAAAACAAAGCTCCAATTTCTTGTATGGGTTTCC-  281
      ||||||||||| |||||||||||||||||||||| |||||||||||||| 
seq2  TTTGATATCAAAGTAGAAAACAAAGCTCCAATTTATTGTATGGGTTTCCT  299

seq1  -----------TGTTTGTGTGTTTGTTTGTTTATAAAACTTGGTCCCACA  320
                 ||||||| |||||||||| |||||||||  | |||||||
seq2  GTTGGTTGGTTTGTTTGTTTGTTTGTTTGATTATAAAACAGGTTCCCACA  349

seq1  CTCTAGTCCTGATTTTCATGTGTCCTGATATAGAAACCAGAATGGCTTTT  370
      ||||| || ||| ||||| ||||||||||||||| |||||||||  ||||
seq2  CTCTATTCTTGACTTTCACGTGTCCTGATATAGAGACCAGAATGTATTTT  399

seq1  AGATCACATCAATCTGCCTGCCTGAGCCCCCTGACAGCTAGGATGGAAGA  420
      ||||||||| | | | |||||||||||||||||||||||||||| |||||
seq2  AGATCACATAACTATCCCTGCCTGAGCCCCCTGACAGCTAGGATAGAAGA  449

seq1  CCTCTGTCATTGACAGGCTGATTTCTTTTCTTTTCTTTTCTTTTCTTTTC  470
      ||||| |||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTCTTTCATTGACAGGCTGATTTCTTTTC-TTTCTTTTCTTTTCTTTTC  498

seq1  TTTTCTTTTCTTTTCTTTTCTTTTCTTTCTTTTCTTTTCTTTTCTTTTCT  520
      |||||||||||||||||||||    |||||||||||||||||||||||||
seq2  TTTTCTTTTCTTTTCTTTTCT----TTTCTTTTCTTTTCTTTTCTTTTCT  544

seq1  TTTCTTTTCTTTTC-TTTCTTTTCTTCTCTTCTCTTTTCTTCTCTTTTCT  569
       |||||| |||| | ||||||||||| |||| ||||||||| ||||||||
seq2  CTTCTTTCCTTTCCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCT  594

seq1  TTTCTTTTTTTTCTTTCTTTTTCTTTTTTTTTTTTTGTCTGAAATCTATA  619
       ||||||| ||            || ||||||||| |||||||  || ||
seq2  CTTCTTTTCTT------------TTCTTTTTTTTTGGTCTGAATGCTGTA  632

seq1  TCTTCATATATTGGCCAATGAATTACCACCAGGCTTACAGAGTTCATTTC  669
      ||||||||||||                   |||||||||||||||||||
seq2  TCTTCATATATT-------------------GGCTTACAGAGTTCATTTC  663

seq1  TTGTTTCATTTCAGAGTGACCATTCCTTAGACTTTTATATCTCTGGATAT  719
      ||||||||||||||| ||| ||| ||||||||||||||||||||||||||
seq2  TTGTTTCATTTCAGATTGAGCATGCCTTAGACTTTTATATCTCTGGATAT  713

seq1  AATGTTCACAACCTGCATATGT-AAATTATTTTCTTACCCACTTGTAGGA  768
      ||||||||   |||||||||||  ||||||||||||||||||||||||||
seq2  AATGTTCATGTCCTGCATATGTGTAATTATTTTCTTACCCACTTGTAGGA  763

seq1  GTTC----TCTGGTCTTTCATTAAGTTTGTTTCTGCCTTCTTTGAATTC  813
      ||||    ||| |||||||||||||||||||| ||||||||||||||||
seq2  GTTCTCTATCTAGTCTTTCATTAAGTTTGTTTTTGCCTTCTTTGAATTC  812